Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G6155 Papaver somniferum HOM05D003667 ORTHO05D004397 2.1e-118 429.1 225 100.0
PSO675G2224 Papaver somniferum HOM05D003667 ORTHO05D004397 2.7e-113 412.1 225 96.0
PSO170G5262 Papaver somniferum HOM05D003667 ORTHO05D004397 3.6e-102 375.2 226 87.6
PSO357G0141 Papaver somniferum HOM05D003667 ORTHO05D004397 1.0e-101 373.6 226 87.2
Nn7g37255 Nelumbo nucifera HOM05D003667 ORTHO05D004397 9.8e-92 340.5 223 78.0
TAR623G0153 Trochodendron aralioides HOM05D003667 ORTHO05D004397 2.9e-91 339.0 220 79.1
Nn6g34578 Nelumbo nucifera HOM05D003667 ORTHO05D004397 8.3e-91 337.4 220 77.7
MBI17_g12494_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 9.2e-90 334.0 223 76.2
CsaV3_4G012110 Cucumis sativus L. HOM05D003667 ORTHO05D004397 1.1e-87 327.0 220 74.1
ClCG04G005470 Citrullus lanatus HOM05D003667 ORTHO05D004397 3.3e-87 325.5 220 73.2
GSVIVG01029952001 Vitis vinifera HOM05D003667 ORTHO05D004397 5.6e-87 324.7 219 73.1
Aqoxy1G00535 Aquilegia oxysepala HOM05D003667 ORTHO05D004397 2.8e-86 322.4 220 76.4
Hma1.2p1_0106F.1_g051140 Hydrangea macrophylla HOM05D003667 ORTHO05D004397 6.2e-86 321.2 226 72.1
MELO3C008823.2 Cucumis melo HOM05D003667 ORTHO05D004397 1.4e-85 320.1 220 72.3
Sed0016620 Sechium edule HOM05D003667 ORTHO05D004397 3.7e-83 312.0 225 69.3
Lj2A112G40 Lonicera japonica HOM05D003667 ORTHO05D004397 2.4e-82 309.3 220 70.0
MBI05_g12099_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 2.4e-82 309.3 208 75.0
Gohir.A11G231200 Gossypium hirsutum HOM05D003667 ORTHO05D004397 5.4e-82 308.1 220 70.0
Gorai.007G256800 Gossypium raimondii HOM05D003667 ORTHO05D004397 7.1e-82 307.8 220 70.0
Sed0010728 Sechium edule HOM05D003667 ORTHO05D004397 7.1e-82 307.8 226 68.6
ClCG02G007830 Citrullus lanatus HOM05D003667 ORTHO05D004397 9.2e-82 307.4 218 70.2
Duzib106G0749 Durio zibethinus HOM05D003667 ORTHO05D004397 9.2e-82 307.4 222 68.5
Gohir.D11G242600 Gossypium hirsutum HOM05D003667 ORTHO05D004397 9.2e-82 307.4 220 69.5
Thecc.05G244000 Theobroma cacao HOM05D003667 ORTHO05D004397 1.3e-80 303.5 222 67.6
COL.COLO4_28620 Corchorus olitorius HOM05D003667 ORTHO05D004397 3.0e-80 302.4 222 67.1
CSS0004374 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 6.6e-80 301.2 221 68.8
Ciclev10022078m.g Citrus clementina HOM05D003667 ORTHO05D004397 6.6e-80 301.2 229 66.4
Actinidia06203 Actinidia chinensis HOM05D003667 ORTHO05D004397 8.6e-80 300.8 225 67.6
CSS0013214 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 1.1e-79 300.4 221 68.3
Eucgr.K01520 Eucalyptus grandis HOM05D003667 ORTHO05D004397 3.3e-79 298.9 226 67.7
Actinidia07960 Actinidia chinensis HOM05D003667 ORTHO05D004397 4.3e-79 298.5 225 66.7
CANSAT78G1932 Cannabis sativa HOM05D003667 ORTHO05D004397 9.5e-79 297.4 234 65.8
FAN25G1089 Fragaria x ananassa HOM05D003667 ORTHO05D004397 2.1e-78 296.2 220 67.3
TWI38G1994 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 2.1e-78 296.2 221 67.9
Atru.chr2.1481 Acer truncatum HOM05D003667 ORTHO05D004397 4.7e-78 295.0 221 66.1
FAN21G0540 Fragaria x ananassa HOM05D003667 ORTHO05D004397 4.7e-78 295.0 220 67.3
RcHm_v2.0_Chr5g0045181 Rosa chinensis HOM05D003667 ORTHO05D004397 4.7e-78 295.0 220 67.3
FvH4_3g25040 Fragaria vesca HOM05D003667 ORTHO05D004397 8.1e-78 294.3 217 67.3
FAN11G0144 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.8e-77 293.1 217 66.8
Manes.09G137700 Manihot esculenta HOM05D003667 ORTHO05D004397 3.1e-77 292.4 226 65.9
CDE10G1021 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 5.2e-77 291.6 218 68.8
Rhsim13G0206500 Rhododendron simsii HOM05D003667 ORTHO05D004397 8.9e-77 290.8 226 66.8
MD02G1195300 Malus domestica HOM05D003667 ORTHO05D004397 1.2e-76 290.4 217 68.7
Hund10761 Selenicereus undatus HOM05D003667 ORTHO05D004397 1.9e-74 283.1 220 64.1
Potri.013G062900 Populus trichocarpa HOM05D003667 ORTHO05D004397 2.4e-74 282.7 213 66.2
Sabra13G0056100 Salix brachista HOM05D003667 ORTHO05D004397 2.4e-74 282.7 213 65.7
HPP92_027259 Vanilla planifolia HOM05D003667 ORTHO05D004397 2.4e-74 282.7 202 71.3
Prupe.2G153200 Prunus persica HOM05D003667 ORTHO05D004397 7.8e-73 277.7 227 67.0
HanXRQChr07g0197181 Helianthus annuus HOM05D003667 ORTHO05D004397 1.7e-72 276.6 226 61.9
TWI38G1198 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 2.3e-72 276.2 220 63.6
CiPaw.03G011100 Carya illinoinensis HOM05D003667 ORTHO05D004397 3.0e-72 275.8 220 66.8
Ca_13917_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 8.6e-72 274.2 222 64.4
Oeu035461.1 Olea europaea HOM05D003667 ORTHO05D004397 1.1e-71 273.9 229 59.8
Glyma.08G304700 Glycine max HOM05D003667 ORTHO05D004397 1.5e-71 273.5 225 64.4
Phvul.006G027100 Phaseolus vulgaris HOM05D003667 ORTHO05D004397 1.5e-71 273.5 221 64.7
C04p11070 Brassica napus HOM05D003667 ORTHO05D004397 1.2e-70 270.4 220 59.5
BolC4t22755H Brassica oleracea HOM05D003667 ORTHO05D004397 1.2e-70 270.4 220 59.5
CARHR131380 Cardamine hirsuta HOM05D003667 ORTHO05D004397 1.6e-70 270.0 222 60.4
Sopen07g024170 Solanum pennellii HOM05D003667 ORTHO05D004397 1.6e-70 270.0 228 59.6
Solyc07g047720.3 Solanum lycopersicum HOM05D003667 ORTHO05D004397 2.1e-70 269.6 230 59.6
PGSC0003DMG400018832 Solanum tuberosum HOM05D003667 ORTHO05D004397 2.1e-70 269.6 238 58.8
A05p08960 Brassica napus HOM05D003667 ORTHO05D004397 2.8e-70 269.2 220 59.5
Glyma.18G114700 Glycine max HOM05D003667 ORTHO05D004397 2.8e-70 269.2 225 65.3
THA.LOC104823778 Tarenaya hassleriana HOM05D003667 ORTHO05D004397 2.8e-70 269.2 225 59.6
Thhalv10017208m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 8.1e-70 267.7 222 59.0
Nitab4.5_0001774g0040 Nicotiana tabacum HOM05D003667 ORTHO05D004397 8.1e-70 267.7 234 58.1
PGSC0003DMG400006127 Solanum tuberosum HOM05D003667 ORTHO05D004397 8.1e-70 267.7 237 57.4
BraA05t19858Z Brassica rapa HOM05D003667 ORTHO05D004397 1.1e-69 267.3 220 59.1
Carub.0004s1876 Capsella rubella HOM05D003667 ORTHO05D004397 1.4e-69 266.9 220 59.1
Medtr3g450200 Medicago truncatula HOM05D003667 ORTHO05D004397 1.4e-69 266.9 222 63.5
AL4G33130 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 4.0e-69 265.4 220 58.6
AT2G36900 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 5.2e-69 265.0 220 59.1
Os03g0655200 Oryza sativa ssp. japonica HOM05D003667 ORTHO05D004397 6.8e-69 264.6 231 58.0
Lj2g0005685 Lotus japonicus HOM05D003667 ORTHO05D004397 8.9e-69 264.2 220 64.5
Sp4g19200 Schrenkiella parvula HOM05D003667 ORTHO05D004397 8.9e-69 264.2 220 58.6
Zm00001eb052810 Zea mays HOM05D003667 ORTHO05D004397 8.9e-69 264.2 230 58.7
BcaB02g09321 Brassica carinata HOM05D003667 ORTHO05D004397 1.2e-68 263.8 220 58.2
CAN.G992.19 Capsicum annuum HOM05D003667 ORTHO05D004397 1.2e-68 263.8 234 58.1
SEGI_40073 Sequoiadendron giganteum HOM05D003667 ORTHO05D004397 1.5e-68 263.5 230 57.8
Migut.L01870 Erythranthe guttata HOM05D003667 ORTHO05D004397 2.6e-68 262.7 241 57.3
Nitab4.5_0001741g0020 Nicotiana tabacum HOM05D003667 ORTHO05D004397 5.8e-68 261.5 231 58.9
Cc03_g11050 Coffea canephora HOM05D003667 ORTHO05D004397 7.6e-68 261.2 224 61.6
Aa31LG6G14320 Aethionema arabicum HOM05D003667 ORTHO05D004397 1.3e-67 260.4 222 59.0
Thhalv10014611m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 2.9e-67 259.2 220 58.6
MSTRG.26557 Avicennia marina HOM05D003667 ORTHO05D004397 3.8e-67 258.8 237 57.0
Cpa.g.sc28.13 Carica papaya HOM05D003667 ORTHO05D004397 3.8e-67 258.8 216 58.8
Haze_14026 Corylus avellana HOM05D003667 ORTHO05D004397 3.8e-67 258.8 216 63.0
Psat5g209680 Pisum sativum HOM05D003667 ORTHO05D004397 4.9e-67 258.5 222 61.3
VMungo0540G2144 Vigna mungo HOM05D003667 ORTHO05D004397 6.4e-67 258.1 212 63.2
Carub.0008s1055 Capsella rubella HOM05D003667 ORTHO05D004397 8.4e-67 257.7 221 57.5
arahy.Tifrunner.gnm1.ann1.FV18MX Arachis hypogaea HOM05D003667 ORTHO05D004397 1.1e-66 257.3 216 60.2
Lalb_Chr17g0348151 Lupinus albus HOM05D003667 ORTHO05D004397 1.1e-66 257.3 216 63.4
arahy.Tifrunner.gnm1.ann1.VNW58P Arachis hypogaea HOM05D003667 ORTHO05D004397 1.4e-66 256.9 219 60.3
arahy.Tifrunner.gnm1.ann1.7QGR70 Arachis hypogaea HOM05D003667 ORTHO05D004397 1.9e-66 256.5 216 60.6
TPR.G8769 Trifolium pratense HOM05D003667 ORTHO05D004397 3.2e-66 255.8 217 60.8
CARHR257860 Cardamine hirsuta HOM05D003667 ORTHO05D004397 4.2e-66 255.4 221 57.0
AL8G24670 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 7.1e-66 254.6 221 57.0
AT5G50440 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 4.6e-65 251.9 221 56.1
TPR.G14738 Trifolium pratense HOM05D003667 ORTHO05D004397 4.6e-65 251.9 218 61.0
Medtr5g090520 Medicago truncatula HOM05D003667 ORTHO05D004397 1.1e-63 247.3 217 59.4
Ca_06238_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 7.3e-63 244.6 217 58.5
Psat2g018160 Pisum sativum HOM05D003667 ORTHO05D004397 6.2e-62 241.5 217 57.6
SGA_v2.0_scaffold392G50657 Striga asiatica HOM05D003667 ORTHO05D004397 1.8e-61 240.0 253 53.4
SGA_v2.0_scaffold41G15803 Striga asiatica HOM05D003667 ORTHO05D004397 5.3e-61 238.4 277 49.5
SMO358G0442 Selaginella moellendorffii HOM05D003667 ORTHO05D004397 9.0e-61 237.7 231 53.7
unitig_8.g4943 Utricularia gibba HOM05D003667 ORTHO05D004397 1.2e-60 237.3 221 56.1
Lsat_1_v5_gn_6_31701 Lactuca sativa HOM05D003667 ORTHO05D004397 3.4e-60 235.7 218 57.8
Mapoly0001s0234 Marchantia polymorpha HOM05D003667 ORTHO05D004397 3.4e-60 235.7 216 55.1
HanXRQChr14g0453611 Helianthus annuus HOM05D003667 ORTHO05D004397 4.4e-60 235.3 220 55.0
Peaxi162Scf00776g00027 Petunia axillaris HOM05D003667 ORTHO05D004397 5.8e-60 235.0 214 57.9
Dinv05568 Davidia involucrata HOM05D003667 ORTHO05D004397 3.8e-59 232.3 166 68.7
DCAR_013483 Daucus carota HOM05D003667 ORTHO05D004397 7.1e-58 228.0 163 68.7
Lsat_1_v5_gn_2_103600 Lactuca sativa HOM05D003667 ORTHO05D004397 1.2e-57 227.3 215 55.8
AUR62008662 Chenopodium quinoa HOM05D003667 ORTHO05D004397 1.9e-55 219.9 219 52.1
Pp3c7_13000 Physcomitrium patens HOM05D003667 ORTHO05D004397 1.9e-55 219.9 240 47.5
Ah.02g128310 Amaranthus hybridus HOM05D003667 ORTHO05D004397 5.6e-55 218.4 166 67.5
Sc01g0006150 Simmondsia chinensis HOM05D003667 ORTHO05D004397 2.8e-54 216.1 170 63.5
BcaC02g11814 Brassica carinata HOM05D003667 ORTHO05D004397 4.8e-54 215.3 163 63.2
EL10Ac7g17477 Beta vulgaris HOM05D003667 ORTHO05D004397 1.1e-53 214.2 220 51.8
Pp3c11_11980 Physcomitrium patens HOM05D003667 ORTHO05D004397 1.4e-53 213.8 238 46.6
Prupe.7G022400 Prunus persica HOM05D003667 ORTHO05D004397 1.3e-51 207.2 161 67.1
CiPaw.04G007600 Carya illinoinensis HOM05D003667 ORTHO05D004397 1.1e-50 204.1 156 67.3
Rhsim02G0195900 Rhododendron simsii HOM05D003667 ORTHO05D004397 6.0e-49 198.4 162 62.3
ECA238G3478 Erigeron canadensis HOM05D003667 ORTHO05D004397 3.0e-48 196.1 228 48.7
Lj6g0022641 Lotus japonicus HOM05D003667 ORTHO05D004397 2.5e-47 193.0 154 66.2
CDE10G1036 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 3.1e-45 186.0 218 50.0
MSTRG.10431 Avicennia marina HOM05D003667 ORTHO05D004397 3.8e-43 179.1 145 60.7
Dinv25059 Davidia involucrata HOM05D003667 ORTHO05D004397 2.3e-40 169.9 116 71.6
AagrBONN_evm.TU.Sc2ySwM_117.3822 Anthoceros agrestis HOM05D003667 ORTHO05D004397 3.3e-39 166.0 187 47.1
arahy.Tifrunner.gnm1.ann1.B982CP Arachis hypogaea HOM05D003667 ORTHO05D004397 3.3e-39 166.0 215 45.1
unitig_578.g16057 Utricularia gibba HOM05D003667 ORTHO05D004397 9.6e-39 164.5 206 48.5
AagrBONN_evm.TU.Sc2ySwM_362.869 Anthoceros agrestis HOM05D003667 ORTHO05D004397 1.3e-38 164.1 193 45.6
Cre12.g554200 Chlamydomonas reinhardtii HOM05D003667 ORTHO05D004397 4.5e-36 155.6 221 39.8
Nitab4.5_0001701g0060 Nicotiana tabacum HOM05D003667 ORTHO05D004397 2.9e-35 152.9 220 40.9
Lalb_Chr10g0106501 Lupinus albus HOM05D003667 ORTHO05D004397 4.6e-33 145.6 115 63.5
CSS0044789 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 6.1e-33 145.2 141 56.0
BcaC02g10601 Brassica carinata HOM05D003667 ORTHO05D004397 1.0e-32 144.4 184 44.6
Cfa017699 Carpinus fangiana HOM05D003667 ORTHO05D004397 3.0e-32 142.9 115 60.9
Oeu003870.1 Olea europaea HOM05D003667 ORTHO05D004397 3.0e-32 142.9 126 61.1
Haze_20440 Corylus avellana HOM05D003667 ORTHO05D004397 8.7e-32 141.4 115 61.7
Solyc05g040100.4 Solanum lycopersicum HOM05D003667 ORTHO05D004397 1.1e-31 141.0 191 42.9
Actinidia03933 Actinidia chinensis HOM05D003667 ORTHO05D004397 9.7e-31 137.9 157 49.0
PRCOL_00002098 Prasinoderma coloniale HOM05D003667 ORTHO05D004397 9.7e-31 137.9 218 38.1
Oeu063104.1 Olea europaea HOM05D003667 ORTHO05D004397 1.4e-29 134.0 229 38.9
MCO05G601 Micromonas commoda HOM05D003667 ORTHO05D004397 2.6e-28 129.8 219 33.3
AUR62033108 Chenopodium quinoa HOM05D003667 ORTHO05D004397 3.4e-28 129.4 90 74.4
AagrBONN_evm.TU.Sc2ySwM_368.3326 Anthoceros agrestis HOM05D003667 ORTHO05D004397 2.5e-26 123.2 181 40.9
Rhsim02G0194700 Rhododendron simsii HOM05D003667 ORTHO05D004397 1.7e-22 110.5 84 70.2
Rhsim02G0195800 Rhododendron simsii HOM05D003667 ORTHO05D004397 1.7e-22 110.5 84 70.2
BcaB06g28959 Brassica carinata HOM05D003667 ORTHO05D004397 1.1e-21 107.8 75 66.7
arahy.Tifrunner.gnm1.ann1.K13S6W Arachis hypogaea HOM05D004599 ORTHO05D005564 3.4e-20 102.8 135 45.2
Actinidia37807 Actinidia chinensis HOM05D003667 ORTHO05D004397 5.9e-20 102.1 168 39.9
QL07p048797 Quercus lobata HOM05D000002 ORTHO05D000001 5.9e-20 102.1 175 44.0
CAN.G1036.8 Capsicum annuum HOM05D003667 ORTHO05D004397 7.7e-20 101.7 147 42.2
CBR_g20321 Chara braunii HOM05D003667 ORTHO05D004397 6.5e-19 98.6 112 43.8
Ah.08g213160 Amaranthus hybridus HOM05D003667 ORTHO05D004397 4.2e-18 95.9 70 70.0
Glyma.02G282800 Glycine max HOM05D003667 ORTHO05D004397 4.2e-18 95.9 119 48.7
CSS0038188 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 1.8e-16 90.5 76 61.8
arahy.Tifrunner.gnm1.ann1.835HL2 Arachis hypogaea HOM05D004313 ORTHO05D004397 3.9e-16 89.4 85 50.6
FAN16G1288 Fragaria x ananassa HOM05D003667 ORTHO05D004397 2.6e-15 86.7 58 69.0
BolC4t28047H Brassica oleracea HOM05D003667 ORTHO05D004397 2.2e-14 83.6 53 71.7
arahy.Tifrunner.gnm1.ann1.X6I371 Arachis hypogaea HOM05D003667 ORTHO05D004397 2.8e-14 83.2 75 56.0
BraA04t18306Z Brassica rapa HOM05D003667 ORTHO05D004397 2.8e-14 83.2 50 74.0
Ah.08g213170 Amaranthus hybridus HOM05D003667 ORTHO05D004397 1.1e-13 81.3 76 51.3
A04p28220 Brassica napus HOM05D003667 ORTHO05D004397 1.8e-13 80.5 53 69.8
C04p65580 Brassica napus HOM05D003667 ORTHO05D004397 1.8e-13 80.5 53 69.8
C04p25660 Brassica napus HOM05D003667 ORTHO05D004397 3.1e-13 79.7 208 30.3
C05p50890 Brassica napus HOM05D003667 ORTHO05D004397 3.1e-13 79.7 208 30.3
arahy.Tifrunner.gnm1.ann1.SS7A45 Arachis hypogaea HOM05D000726 ORTHO05D004397 9.1e-13 78.2 75 52.0
arahy.Tifrunner.gnm1.ann1.SJAT5A Arachis hypogaea HOM05D003667 ORTHO05D003672 2.0e-12 77.0 85 47.1
Nitab4.5_0002669g0010 Nicotiana tabacum HOM05D003667 ORTHO05D004397 5.9e-12 75.5 101 46.5
AUR62033107 Chenopodium quinoa HOM05D003667 ORTHO05D004397 5.0e-11 72.4 53 60.4
TPR.G36075 Trifolium pratense HOM05D003667 ORTHO05D004397 5.0e-11 72.4 50 64.0
Lalb_Chr10g0106511 Lupinus albus HOM05D003667 ORTHO05D004397 1.1e-10 71.2 77 50.6
BNapus_Darmor_BZH_scaffold_271p00010 Brassica napus HOM05D003667 ORTHO05D004397 1.9e-10 70.5 198 29.8
VMungo0720G0063 Vigna mungo HOM05D003667 ORTHO05D004397 3.2e-10 69.7 72 47.2
FvH4_3g32534 Fragaria vesca HOM05D003667 ORTHO05D004397 4.0e-08 62.8 77 49.4
HanXRQChr04g0115761 Helianthus annuus HOM05D003667 ORTHO05D004397 4.0e-08 62.8 52 57.7
COL.COLO4_28622 Corchorus olitorius HOM05D003667 ORTHO05D004397 5.2e-08 62.4 77 45.5
Solyc05g040090.1 Solanum lycopersicum HOM05D003667 ORTHO05D004397 3.3e-07 59.7 79 40.5
MD05G1212000 Malus domestica HOM05D003667 ORTHO05D246792 4.8e-06 55.8 43 60.5


User provided reference genes

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