Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G6108 Papaver somniferum HOM05D004572 ORTHO05D005425 1.0e-282 976.1 503 100.0
PSO675G6986 Papaver somniferum HOM05D004572 ORTHO05D005425 4.8e-264 914.1 504 94.0
TAR629G0838 Trochodendron aralioides HOM05D004572 ORTHO05D005425 5.7e-132 475.3 520 53.1
Nn5g27612 Nelumbo nucifera HOM05D004572 ORTHO05D005425 9.1e-130 468.0 527 52.2
Aqoxy5G04375 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 6.1e-126 455.3 522 52.7
MBI12_g26901_MAGBIO Magnolia biondii HOM05D004572 ORTHO05D005425 8.0e-126 454.9 476 54.0
Dinv09440 Davidia involucrata HOM05D004572 ORTHO05D005425 3.7e-115 419.5 520 48.1
Hund14323 Selenicereus undatus HOM05D004572 ORTHO05D005425 1.2e-110 404.4 516 48.6
Thecc.04G269400 Theobroma cacao HOM05D004572 ORTHO05D005425 4.4e-108 396.0 511 47.4
ATR0579G060 Amborella trichopoda HOM05D004572 ORTHO05D005425 2.4e-106 390.2 553 45.6
Ah.08g210120 Amaranthus hybridus HOM05D004572 ORTHO05D005425 9.2e-106 388.3 509 46.6
Gohir.D05G255680 Gossypium hirsutum HOM05D004572 ORTHO05D005425 3.5e-105 386.3 513 46.6
Hma1.2p1_0127F.1_g059630 Hydrangea macrophylla HOM05D004572 ORTHO05D005425 1.7e-104 384.0 526 45.4
Rhsim01G0089200 Rhododendron simsii HOM05D004572 ORTHO05D005425 1.7e-104 384.0 520 46.0
Gorai.009G267300 Gossypium raimondii HOM05D004572 ORTHO05D005425 3.0e-104 383.3 513 46.4
TWI32G1304 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 1.1e-103 381.3 513 47.0
Duzib177G0040 Durio zibethinus HOM05D004572 ORTHO05D005425 2.5e-103 380.2 509 46.2
Sc07g0008270 Simmondsia chinensis HOM05D004572 ORTHO05D005425 1.6e-102 377.5 548 44.7
Duzib268G1853 Durio zibethinus HOM05D004572 ORTHO05D005425 6.2e-102 375.6 508 45.7
Gohir.A05G253900 Gossypium hirsutum HOM05D004572 ORTHO05D005425 6.2e-102 375.6 516 45.9
Cc04_g13510 Coffea canephora HOM05D004572 ORTHO05D005425 4.0e-101 372.9 514 44.9
THA.LOC104815806 Tarenaya hassleriana HOM05D004572 ORTHO05D005425 4.0e-101 372.9 509 44.4
Cc04_g13460 Coffea canephora HOM05D004572 ORTHO05D005425 4.4e-100 369.4 511 44.6
Sp1g28990 Schrenkiella parvula HOM05D004572 ORTHO05D005425 5.8e-100 369.0 508 45.1
Carub.0001s3171 Capsella rubella HOM05D004572 ORTHO05D005425 8.3e-99 365.2 510 44.5
AUR62008525 Chenopodium quinoa HOM05D004572 ORTHO05D005425 1.4e-98 364.4 508 44.3
CARHR032960 Cardamine hirsuta HOM05D004572 ORTHO05D005425 1.9e-98 364.0 508 44.1
COL.COLO4_28616 Corchorus olitorius HOM05D004572 ORTHO05D005425 1.9e-98 364.0 510 43.1
Manes.03G127100 Manihot esculenta HOM05D004572 ORTHO05D005425 5.4e-98 362.5 512 43.8
Manes.03G127200 Manihot esculenta HOM05D004572 ORTHO05D005425 7.0e-98 362.1 514 43.2
CANSAT56G0747 Cannabis sativa HOM05D004572 ORTHO05D005425 9.2e-98 361.7 534 43.3
ClCG07G002440 Citrullus lanatus HOM05D004572 ORTHO05D005425 9.2e-98 361.7 527 44.2
CANSAT56G1258 Cannabis sativa HOM05D004572 ORTHO05D005425 1.6e-97 360.9 536 43.1
AL1G47900 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 2.7e-97 360.1 509 43.6
CsaV3_3G030260 Cucumis sativus L. HOM05D004572 ORTHO05D005425 2.7e-97 360.1 531 43.9
Nitab4.5_0000907g0020 Nicotiana tabacum HOM05D004572 ORTHO05D005425 4.6e-97 359.4 518 41.9
Nitab4.5_0001131g0030 Nicotiana tabacum HOM05D004572 ORTHO05D005425 4.6e-97 359.4 520 42.3
Lj2g0021533 Lotus japonicus HOM05D004572 ORTHO05D005425 6.0e-97 359.0 510 44.1
AT1G33520 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 1.3e-96 357.8 511 43.2
PGSC0003DMG400029573 Solanum tuberosum HOM05D004572 ORTHO05D005425 1.7e-96 357.5 519 43.9
arahy.Tifrunner.gnm1.ann1.GWI8GZ Arachis hypogaea HOM05D004572 ORTHO05D005425 2.3e-96 357.1 513 45.2
Solyc08g074570.1 Solanum lycopersicum HOM05D004572 ORTHO05D005425 5.0e-96 355.9 520 43.8
Oeu028098.1 Olea europaea HOM05D004572 ORTHO05D005425 6.6e-96 355.5 516 44.4
Psat6g099680 Pisum sativum HOM05D004572 ORTHO05D005425 1.1e-95 354.8 523 43.8
Sopen08g023180 Solanum pennellii HOM05D004572 ORTHO05D005425 1.1e-95 354.8 520 43.7
BcaB03g13695 Brassica carinata HOM05D004572 ORTHO05D005425 1.9e-95 354.0 503 44.7
arahy.Tifrunner.gnm1.ann1.Z20ZUZ Arachis hypogaea HOM05D004572 ORTHO05D005425 2.5e-95 353.6 509 44.0
BraA05t21310Z Brassica rapa HOM05D004572 ORTHO05D005425 2.5e-95 353.6 503 44.9
MELO3C022741.2 Cucumis melo HOM05D004572 ORTHO05D005425 3.3e-95 353.2 533 43.2
Phvul.003G004000 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 3.3e-95 353.2 517 45.6
Thhalv10007601m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 4.3e-95 352.8 506 43.7
BolC5t32530H Brassica oleracea HOM05D004572 ORTHO05D005425 9.5e-95 351.7 504 46.2
BcaC05g27801 Brassica carinata HOM05D004572 ORTHO05D005425 1.2e-94 351.3 503 44.5
C05p37990 Brassica napus HOM05D004572 ORTHO05D005425 1.2e-94 351.3 503 44.5
DCAR_023418 Daucus carota HOM05D004572 ORTHO05D005425 1.6e-94 350.9 512 43.0
Peaxi162Scf00445g00102 Petunia axillaris HOM05D004572 ORTHO05D005425 6.2e-94 349.0 517 42.2
VMungo0720G3103 Vigna mungo HOM05D004572 ORTHO05D005425 1.8e-93 347.4 516 45.0
vmacro05137 Vaccinium macrocarpon HOM05D004572 ORTHO05D005425 4.0e-93 346.3 543 41.4
MSTRG.11833 Avicennia marina HOM05D004572 ORTHO05D005425 5.2e-93 345.9 513 41.1
Aa31LG6G7980 Aethionema arabicum HOM05D004572 ORTHO05D005425 6.8e-93 345.5 510 43.1
Phvul.003G026500 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 6.8e-93 345.5 529 44.2
DCAR_017646 Daucus carota HOM05D004572 ORTHO05D005425 8.9e-93 345.1 509 42.6
AUR62019030 Chenopodium quinoa HOM05D004572 ORTHO05D005425 1.2e-92 344.7 511 42.7
CSS0029181 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 1.3e-91 341.3 529 41.4
CSS0036523 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 1.3e-91 341.3 529 41.4
QL93p0146_0040 Quercus lobata HOM05D004572 ORTHO05D005425 1.7e-91 340.9 508 41.9
QL06p018920 Quercus lobata HOM05D004572 ORTHO05D005425 2.2e-91 340.5 508 41.5
Sabra03G0071200 Salix brachista HOM05D004572 ORTHO05D005425 2.9e-91 340.1 505 41.4
Sed0022149 Sechium edule HOM05D004572 ORTHO05D005425 4.1e-90 336.3 552 40.0
Glyma.07G197900 Glycine max HOM05D004572 ORTHO05D005425 3.5e-89 333.2 515 43.5
Potri.001G129700 Populus trichocarpa HOM05D004572 ORTHO05D005425 7.8e-89 332.0 510 42.0
Potri.003G104200 Populus trichocarpa HOM05D004572 ORTHO05D005425 1.3e-88 331.3 507 41.2
Migut.A00508 Erythranthe guttata HOM05D004572 ORTHO05D005425 1.7e-88 330.9 515 42.1
MD11G1222200 Malus domestica HOM05D004572 ORTHO05D005425 3.0e-88 330.1 525 40.6
Prupe.4G208800 Prunus persica HOM05D004572 ORTHO05D005425 3.9e-88 329.7 522 41.2
PGR042G2393 Punica granatum HOM05D004572 ORTHO05D005425 8.6e-88 328.6 493 42.4
Medtr1g038340 Medicago truncatula HOM05D004572 ORTHO05D005425 4.3e-87 326.2 444 47.1
Lj8P410T5 Lonicera japonica HOM05D004572 ORTHO05D005425 1.2e-86 324.7 369 50.4
arahy.Tifrunner.gnm1.ann1.41JFP3 Arachis hypogaea HOM05D004572 ORTHO05D005425 1.6e-86 324.3 509 41.5
FAN21G2024 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.6e-86 324.3 520 40.0
Lalb_Chr20g0109201 Lupinus albus HOM05D004572 ORTHO05D005425 2.8e-86 323.6 513 41.9
RcHm_v2.0_Chr5g0038051 Rosa chinensis HOM05D004572 ORTHO05D005425 3.6e-86 323.2 522 40.8
Ca_12422_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 1.8e-85 320.9 453 44.8
Ca_12425_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 1.8e-85 320.9 453 44.8
FAN11G3304 Fragaria x ananassa HOM05D004572 ORTHO05D005425 4.0e-85 319.7 520 39.8
QL12p001966 Quercus lobata HOM05D004572 ORTHO05D005425 6.8e-85 318.9 486 40.1
FvH4_3g22160 Fragaria vesca HOM05D004572 ORTHO05D005425 8.9e-85 318.5 520 39.6
FAN16G2201 Fragaria x ananassa HOM05D004572 ORTHO05D005425 4.4e-84 316.2 521 39.7
TPR.G29795 Trifolium pratense HOM05D004572 ORTHO05D005425 7.6e-84 315.5 518 41.9
SGA_v2.0_scaffold27G11714 Striga asiatica HOM05D004572 ORTHO05D005425 9.9e-84 315.1 509 40.3
CAN.G195.29 Capsicum annuum HOM05D004572 ORTHO05D005425 1.7e-83 314.3 405 44.9
MD03G1208000 Malus domestica HOM05D004572 ORTHO05D005425 2.9e-83 313.5 518 40.5
SalBow4G0115 Salvia bowleyana HOM05D004572 ORTHO05D005425 4.9e-83 312.8 515 39.0
Glyma.20G002200 Glycine max HOM05D004572 ORTHO05D005425 3.5e-81 306.6 445 44.9
unitig_748.g8160 Utricularia gibba HOM05D004572 ORTHO05D005425 8.7e-80 302.0 512 38.5
CDE02G0510 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 1.2e-78 298.1 356 49.2
Eucgr.E01208 Eucalyptus grandis HOM05D004572 ORTHO05D005425 2.8e-78 297.0 536 38.4
Sabra01G0100000 Salix brachista HOM05D004572 ORTHO05D005425 9.0e-77 292.0 375 46.9
HanXRQChr04g0098951 Helianthus annuus HOM05D004572 ORTHO05D005425 4.9e-75 286.2 506 38.5
Haze_21257 Corylus avellana HOM05D004572 ORTHO05D005425 1.4e-74 284.6 511 36.8
ECA248G3611 Erigeron canadensis HOM05D004572 ORTHO05D005425 1.4e-74 284.6 503 36.2
SEGI_34794 Sequoiadendron giganteum HOM05D004572 ORTHO05D005425 2.7e-73 280.4 727 31.5
PSO017G4650 Papaver somniferum HOM05D004572 ORTHO05D005425 6.0e-73 279.3 447 44.5
ECA233G3653 Erigeron canadensis HOM05D004572 ORTHO05D005425 2.3e-72 277.3 507 37.9
CiPaw.11G104400 Carya illinoinensis HOM05D004572 ORTHO05D005425 1.3e-70 271.6 517 34.8
Cfa012912 Carpinus fangiana HOM05D004572 ORTHO05D005425 6.2e-70 269.2 511 35.0
AL7G28150 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 1.8e-69 267.7 507 37.1
Manes.15G074001 Manihot esculenta HOM05D004572 ORTHO05D005425 3.2e-66 256.9 497 36.4
Carub.0007s1601 Capsella rubella HOM05D004572 ORTHO05D005425 7.1e-66 255.8 508 36.2
AT4G25020 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 1.2e-65 255.0 507 34.3
Atru.chr6.2109 Acer truncatum HOM05D004572 ORTHO05D005425 1.0e-64 251.9 517 34.2
Oeu048006.1 Olea europaea HOM05D004572 ORTHO05D005425 1.1e-61 241.9 447 36.9
Mapoly0027s0115 Marchantia polymorpha HOM05D004572 ORTHO05D005425 1.2e-60 238.4 667 31.2
SMO347G0031 Selaginella moellendorffii HOM05D004572 ORTHO05D005425 1.3e-59 235.0 458 35.6
VMungo0251G2350 Vigna mungo HOM05D004572 ORTHO05D005425 4.9e-59 233.0 373 39.7
Cpa.g.sc21.98 Carica papaya HOM05D004572 ORTHO05D005425 2.4e-58 230.7 466 37.3
PSO170G2332 Papaver somniferum HOM05D004572 ORTHO05D005425 3.0e-56 223.8 151 77.5
Zm00001eb398470 Zea mays HOM05D004572 ORTHO05D005425 1.5e-55 221.5 500 33.6
HPP92_014435 Vanilla planifolia HOM05D004572 ORTHO05D005425 1.9e-55 221.1 527 33.2
Cfa012902 Carpinus fangiana HOM05D004572 ORTHO05D005425 4.8e-54 216.5 482 31.5
Os03g0253500 Oryza sativa ssp. japonica HOM05D004572 ORTHO05D005425 4.8e-54 216.5 538 33.3
Ciclev10001464m.g Citrus clementina HOM05D004572 ORTHO05D005425 9.0e-53 212.2 511 31.9
SHI08932 Sapria himalayana HOM05D004572 ORTHO05D005425 3.2e-50 203.8 508 34.1
MCO10G255 Micromonas commoda HOM05D004572 ORTHO05D005425 7.4e-47 192.6 473 31.3
Thhalv10027298m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 2.2e-46 191.0 475 31.2
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 5.3e-45 186.4 220 48.6
CARHR232410 Cardamine hirsuta HOM05D004572 ORTHO05D005425 5.9e-44 183.0 375 33.1
TWI34G1093 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 2.9e-35 154.1 214 42.5
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 9.4e-34 149.1 343 34.4
CBR_g50444 Chara braunii HOM05D004572 ORTHO05D005425 3.9e-32 143.7 557 24.6
CBR_g54973 Chara braunii HOM05D004572 ORTHO05D005425 7.4e-31 139.4 579 24.9
Cfa021184 Carpinus fangiana HOM05D004572 ORTHO05D005425 1.4e-29 135.2 211 37.4
Cre06.g303500 Chlamydomonas reinhardtii HOM05D004572 ORTHO05D005425 5.3e-29 133.3 601 26.6
Lsat_1_v5_gn_6_80001 Lactuca sativa HOM05D004572 ORTHO05D005425 2.6e-28 131.0 211 39.8
Prupe.4G208700 Prunus persica HOM05D004572 ORTHO05D005425 2.5e-26 124.4 212 42.0
Aqoxy7G00153 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 3.9e-24 117.1 227 35.2
CDE04G1584 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 2.8e-22 110.9 158 40.5
PRCOL_00000575 Prasinoderma coloniale HOM05D004572 ORTHO05D005425 3.7e-22 110.5 501 24.6
HanXRQChr03g0083281 Helianthus annuus HOM05D004572 ORTHO05D005425 6.3e-22 109.8 213 33.3
RcHm_v2.0_Chr5g0037991 Rosa chinensis HOM05D004572 ORTHO05D005425 8.5e-19 99.4 223 32.7
Sabra05G0101600 Salix brachista HOM05D004572 ORTHO05D005425 1.9e-18 98.2 74 54.1
Glyma.09G283500 Glycine max HOM05D004572 ORTHO05D005425 2.5e-18 97.8 205 34.1
FAN16G0157 Fragaria x ananassa HOM05D004572 ORTHO05D005425 4.2e-18 97.1 153 37.3
Nn3g17595 Nelumbo nucifera HOM05D004572 ORTHO05D005425 5.5e-18 96.7 153 43.8
Pp3c1_630 Physcomitrium patens HOM05D004572 ORTHO05D005425 5.5e-18 96.7 236 33.1
CBR_g2939 Chara braunii HOM05D007240 ORTHO05D003552 4.7e-17 93.6 304 28.6
Sed0007980 Sechium edule HOM05D004572 ORTHO05D005425 6.7e-16 89.7 79 50.6
CDE11G0183 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 1.7e-14 85.1 223 27.8
SalBow7G4536 Salvia bowleyana HOM05D000482 ORTHO05D000349 3.7e-14 84.0 121 37.2
AagrBONN_evm.TU.Sc2ySwM_344.5065 Anthoceros agrestis HOM05D004572 ORTHO05D005425 6.3e-14 83.2 160 35.0
TWI74G0109 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 4.1e-13 80.5 214 29.4
EL10Ac2g04634 Beta vulgaris HOM05D003624 ORTHO05D004188 5.2e-08 63.5 123 35.0
PGR142G3002 Punica granatum HOM05D003624 ORTHO05D004188 5.2e-08 63.5 126 34.9
BcaC01g01521 Brassica carinata HOM05D003624 ORTHO05D004188 1.5e-07 62.0 95 40.0
A08p00650 Brassica napus HOM05D003624 ORTHO05D004188 1.5e-07 62.0 95 40.0
C03p92710 Brassica napus HOM05D003624 ORTHO05D004188 1.5e-07 62.0 95 40.0
BolSC126t60220H Brassica oleracea HOM05D003624 ORTHO05D004188 1.5e-07 62.0 95 40.0
BraA08t32123Z Brassica rapa HOM05D003624 ORTHO05D004188 1.5e-07 62.0 95 40.0
AUR62031721 Chenopodium quinoa HOM05D003624 ORTHO05D004188 1.5e-07 62.0 125 34.4
Cpa.g.sc80.54 Carica papaya HOM05D003624 ORTHO05D004188 2.6e-07 61.2 96 36.5
Duzib114G1042 Durio zibethinus HOM05D003624 ORTHO05D004188 2.6e-07 61.2 145 34.5
Sabra05G0101700 Salix brachista HOM05D004572 ORTHO05D005425 2.6e-07 61.2 47 51.1
BcaB04g16957 Brassica carinata HOM05D003624 ORTHO05D004188 4.4e-07 60.5 96 38.5
Atru.chr11.11 Acer truncatum HOM05D003624 ORTHO05D004188 5.7e-07 60.1 96 38.5
Duzib106G0342 Durio zibethinus HOM05D003624 ORTHO05D004188 5.7e-07 60.1 96 39.6
FvH4_3g22140 Fragaria vesca HOM05D004572 ORTHO05D005425 5.7e-07 60.1 189 30.2
PSO384G3632 Papaver somniferum HOM05D003624 ORTHO05D004188 5.7e-07 60.1 102 33.3
AagrBONN_evm.TU.Sc2ySwM_344.715 Anthoceros agrestis HOM05D004572 ORTHO05D005425 7.5e-07 59.7 74 37.8
AUR62001070 Chenopodium quinoa HOM05D003624 ORTHO05D004188 7.5e-07 59.7 125 32.8
Cc11_g00690 Coffea canephora HOM05D004572 ORTHO05D005425 1.7e-06 58.5 107 38.3
Migut.B01491 Erythranthe guttata HOM05D003624 ORTHO05D004188 1.7e-06 58.5 96 34.4
BcaC08g44198 Brassica carinata HOM05D003624 ORTHO05D004188 2.2e-06 58.2 95 36.8
C06p16060 Brassica napus HOM05D003624 ORTHO05D004188 2.2e-06 58.2 95 36.8
BolC6t36805H Brassica oleracea HOM05D003624 ORTHO05D004188 2.2e-06 58.2 95 36.8
Cre16.g654350 Chlamydomonas reinhardtii HOM05D003624 ORTHO05D004188 2.8e-06 57.8 124 33.1
Sed0019448 Sechium edule HOM05D003624 ORTHO05D004188 3.7e-06 57.4 121 36.4
MELO3C014877.2 Cucumis melo HOM05D003624 ORTHO05D004188 4.8e-06 57.0 133 32.3
ECA247G0176 Erigeron canadensis HOM05D003624 ORTHO05D004188 4.8e-06 57.0 128 32.0
Thecc.10G043100 Theobroma cacao HOM05D003624 ORTHO05D004188 4.8e-06 57.0 96 36.5
BcaB02g10822 Brassica carinata HOM05D003624 ORTHO05D004188 6.3e-06 56.6 95 36.8
A05p17470 Brassica napus HOM05D003624 ORTHO05D004188 6.3e-06 56.6 95 35.8
BraA05t20642Z Brassica rapa HOM05D003624 ORTHO05D004188 6.3e-06 56.6 95 35.8
Gohir.D10G228000 Gossypium hirsutum HOM05D003624 ORTHO05D004188 6.3e-06 56.6 145 33.1
Gorai.011G260400 Gossypium raimondii HOM05D003624 ORTHO05D004188 6.3e-06 56.6 145 33.1
AUR62032608 Chenopodium quinoa HOM05D003624 ORTHO05D004188 8.3e-06 56.2 129 32.6
Cc02_g26180 Coffea canephora HOM05D004572 ORTHO05D005425 8.3e-06 56.2 87 42.5
Eucgr.C04375 Eucalyptus grandis HOM05D003624 ORTHO05D004188 8.3e-06 56.2 96 36.5


User provided reference genes

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