Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G6054 Papaver somniferum HOM05D004862 ORTHO05D005841 2.1e-293 1011.5 488 100.0
PSO675G5038 Papaver somniferum HOM05D004862 ORTHO05D005841 8.2e-285 983.0 488 97.3
Aqoxy6G00342 Aquilegia oxysepala HOM05D004862 ORTHO05D005841 2.3e-231 805.4 488 78.7
Nn1g06191 Nelumbo nucifera HOM05D004862 ORTHO05D005841 7.8e-227 790.4 489 77.1
Dinv24234 Davidia involucrata HOM05D004862 ORTHO05D005841 1.1e-225 786.6 494 75.9
CSS0014529 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 1.2e-224 783.1 501 74.5
CSS0027197 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 3.6e-224 781.6 501 74.3
Ciclev10015108m.g Citrus clementina HOM05D004862 ORTHO05D005841 6.2e-224 780.8 488 76.6
FAN14G5837 Fragaria x ananassa HOM05D004862 ORTHO05D005841 6.8e-223 777.3 488 75.2
MD12G1223100 Malus domestica HOM05D004862 ORTHO05D005841 2.0e-222 775.8 488 74.6
FAN14G4788 Fragaria x ananassa HOM05D004862 ORTHO05D005841 2.6e-222 775.4 488 75.0
FAN05G4126 Fragaria x ananassa HOM05D004862 ORTHO05D005841 4.4e-222 774.6 488 75.0
Lsat_1_v5_gn_9_117961 Lactuca sativa HOM05D004862 ORTHO05D005841 7.5e-222 773.9 489 75.7
FvH4_6g05370 Fragaria vesca HOM05D004862 ORTHO05D005841 9.8e-222 773.5 488 74.8
DCAR_021834 Daucus carota HOM05D004862 ORTHO05D005841 3.7e-221 771.5 489 75.1
Nitab4.5_0000078g0200 Nicotiana tabacum HOM05D004862 ORTHO05D005841 8.3e-221 770.4 497 73.8
Cc02_g18820 Coffea canephora HOM05D004862 ORTHO05D005841 1.1e-220 770.0 490 75.5
RcHm_v2.0_Chr3g0454151 Rosa chinensis HOM05D004862 ORTHO05D005841 1.4e-220 769.6 488 74.6
FAN02G3155 Fragaria x ananassa HOM05D004862 ORTHO05D005841 1.9e-220 769.2 488 74.8
Lj5A244T54 Lonicera japonica HOM05D004862 ORTHO05D005841 1.9e-220 769.2 488 75.2
Rhsim11G0133700 Rhododendron simsii HOM05D004862 ORTHO05D005841 1.9e-220 769.2 497 74.4
Duzib132G0210 Durio zibethinus HOM05D004862 ORTHO05D005841 4.1e-220 768.1 494 75.5
Manes.14G165200 Manihot esculenta HOM05D004862 ORTHO05D005841 4.1e-220 768.1 488 75.8
Nitab4.5_0005079g0020 Nicotiana tabacum HOM05D004862 ORTHO05D005841 9.2e-220 766.9 497 73.4
PGR042G3925 Punica granatum HOM05D004862 ORTHO05D005841 1.6e-219 766.1 491 75.6
CANSAT54G0577 Cannabis sativa HOM05D004862 ORTHO05D005841 2.1e-219 765.8 492 74.4
Hund06875 Selenicereus undatus HOM05D004862 ORTHO05D005841 2.1e-219 765.8 497 74.6
Solyc10g047120.2 Solanum lycopersicum HOM05D004862 ORTHO05D005841 2.7e-219 765.4 488 74.2
CiPaw.13G145700 Carya illinoinensis HOM05D004862 ORTHO05D005841 3.5e-219 765.0 492 74.4
FAN09G3019 Fragaria x ananassa HOM05D004862 ORTHO05D005841 3.5e-219 765.0 488 74.4
Sopen10g017280 Solanum pennellii HOM05D004862 ORTHO05D005841 6.0e-219 764.2 488 74.0
CAN.G1.65 Capsicum annuum HOM05D004862 ORTHO05D005841 1.3e-218 763.1 488 74.2
COL.COLO4_33088 Corchorus olitorius HOM05D004862 ORTHO05D005841 1.7e-218 762.7 493 75.1
AUR62003397 Chenopodium quinoa HOM05D004862 ORTHO05D005841 3.9e-218 761.5 491 74.9
Thecc.02G156500 Theobroma cacao HOM05D004862 ORTHO05D005841 3.9e-218 761.5 493 74.6
Cfa010154 Carpinus fangiana HOM05D004862 ORTHO05D005841 1.5e-217 759.6 489 75.1
Prupe.6G329700 Prunus persica HOM05D004862 ORTHO05D005841 1.5e-217 759.6 489 73.8
Gohir.D13G060400 Gossypium hirsutum HOM05D004862 ORTHO05D005841 1.9e-217 759.2 490 75.1
Phvul.002G205600 Phaseolus vulgaris HOM05D004862 ORTHO05D005841 3.3e-217 758.4 490 74.3
Glyma.08G075600 Glycine max HOM05D004862 ORTHO05D005841 5.6e-217 757.7 490 74.3
Haze_23539 Corylus avellana HOM05D004862 ORTHO05D005841 7.3e-217 757.3 489 75.3
arahy.Tifrunner.gnm1.ann1.WE1E8S Arachis hypogaea HOM05D004862 ORTHO05D005841 9.5e-217 756.9 490 73.3
arahy.Tifrunner.gnm1.ann1.34Q84K Arachis hypogaea HOM05D004862 ORTHO05D005841 1.2e-216 756.5 490 73.3
Glyma.05G121000 Glycine max HOM05D004862 ORTHO05D005841 1.2e-216 756.5 490 73.7
Oeu000228.1 Olea europaea HOM05D004862 ORTHO05D005841 1.2e-216 756.5 488 73.8
ClCG09G014610 Citrullus lanatus HOM05D004862 ORTHO05D005841 2.8e-216 755.4 488 74.6
Potri.001G207000 Populus trichocarpa HOM05D004862 ORTHO05D005841 3.6e-216 755.0 488 75.0
Gorai.013G068500 Gossypium raimondii HOM05D004862 ORTHO05D005841 8.1e-216 753.8 504 73.4
HanXRQChr03g0065771 Helianthus annuus HOM05D004862 ORTHO05D005841 1.1e-215 753.4 488 74.8
Gohir.A01G012300 Gossypium hirsutum HOM05D004862 ORTHO05D005841 1.4e-215 753.1 493 73.6
Ah.04g163010 Amaranthus hybridus HOM05D004862 ORTHO05D005841 2.3e-215 752.3 489 74.6
Ca_29818_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 2.3e-215 752.3 490 73.7
PGSC0003DMG400017691 Solanum tuberosum HOM05D004862 ORTHO05D005841 2.3e-215 752.3 524 69.8
MBI06_g20970_MAGBIO Magnolia biondii HOM05D004862 ORTHO05D005841 4.0e-215 751.5 493 74.2
Medtr4g094315 Medicago truncatula HOM05D004862 ORTHO05D005841 6.8e-215 750.7 490 74.3
EL10Ac4g08938 Beta vulgaris HOM05D004862 ORTHO05D005841 1.5e-214 749.6 491 74.1
Lalb_Chr07g0189371 Lupinus albus HOM05D004862 ORTHO05D005841 2.0e-214 749.2 493 73.4
VMungo0251G1232 Vigna mungo HOM05D004862 ORTHO05D005841 2.0e-214 749.2 515 71.5
Gorai.002G015300 Gossypium raimondii HOM05D004862 ORTHO05D005841 7.6e-214 747.3 493 73.2
Sc09g0004450 Simmondsia chinensis HOM05D004862 ORTHO05D005841 1.7e-213 746.1 488 73.2
THA.LOC104818254 Tarenaya hassleriana HOM05D004862 ORTHO05D005841 3.7e-213 745.0 488 73.0
SGA_v2.0_scaffold332G48937 Striga asiatica HOM05D004862 ORTHO05D005841 8.4e-213 743.8 488 72.5
MELO3C012691.2 Cucumis melo HOM05D004862 ORTHO05D005841 3.2e-212 741.9 489 73.0
Lj4g0019477 Lotus japonicus HOM05D004862 ORTHO05D005841 3.2e-212 741.9 491 72.9
TWI23G0249 Tripterygium wilfordii HOM05D004862 ORTHO05D005841 7.1e-212 740.7 488 73.6
Gohir.A13G061500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 9.2e-212 740.3 467 76.2
vmacro01803 Vaccinium macrocarpon HOM05D004862 ORTHO05D005841 2.1e-211 739.2 578 64.9
ECA240G2004 Erigeron canadensis HOM05D004862 ORTHO05D005841 2.7e-211 738.8 479 74.1
Psat7g096360 Pisum sativum HOM05D004862 ORTHO05D005841 7.8e-211 737.3 490 73.3
Gohir.D01G013500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 3.0e-210 735.3 471 74.3
CDE02G2941 Ceratophyllum demersum HOM05D004862 ORTHO05D005841 3.9e-210 734.9 488 71.7
QL01p020593 Quercus lobata HOM05D004862 ORTHO05D005841 3.9e-210 734.9 583 63.8
MSTRG.16558 Avicennia marina HOM05D004862 ORTHO05D005841 6.6e-210 734.2 488 72.1
Lj9A317G73 Lonicera japonica HOM05D004862 ORTHO05D005841 7.3e-209 730.7 497 70.8
ATR1136G066 Amborella trichopoda HOM05D004862 ORTHO05D005841 2.1e-208 729.2 494 71.1
CsaV3_7G022230 Cucumis sativus L. HOM05D004862 ORTHO05D005841 8.1e-208 727.2 462 74.9
BraA06t27120Z Brassica rapa HOM05D004862 ORTHO05D005841 2.4e-207 725.7 488 71.7
Sed0027136 Sechium edule HOM05D004862 ORTHO05D005841 2.4e-207 725.7 489 71.6
A06p42030 Brassica napus HOM05D004862 ORTHO05D005841 1.5e-206 723.0 488 71.5
C07p35450 Brassica napus HOM05D004862 ORTHO05D005841 3.8e-205 718.4 488 70.5
BolC7t44069H Brassica oleracea HOM05D004862 ORTHO05D005841 3.8e-205 718.4 488 70.5
Sabra01G0160300 Salix brachista HOM05D004862 ORTHO05D005841 4.9e-205 718.0 572 64.0
Thhalv10004120m.g Eutrema salsugineum HOM05D004862 ORTHO05D005841 6.4e-205 717.6 488 70.7
CARHR147430 Cardamine hirsuta HOM05D004862 ORTHO05D005841 3.2e-204 715.3 489 71.0
AT3G26410 Arabidopsis thaliana HOM05D004862 ORTHO05D005841 9.3e-204 713.8 488 70.5
Sp2g15560 Schrenkiella parvula HOM05D004862 ORTHO05D005841 3.5e-203 711.8 488 70.1
BolC2t11381H Brassica oleracea HOM05D004862 ORTHO05D005841 4.6e-203 711.4 488 70.7
Aa31LG2G6120 Aethionema arabicum HOM05D004862 ORTHO05D005841 6.0e-203 711.1 488 69.7
Migut.B00646 Erythranthe guttata HOM05D004862 ORTHO05D005841 1.7e-202 709.5 488 69.5
BraA02t08465Z Brassica rapa HOM05D004862 ORTHO05D005841 3.9e-202 708.4 488 70.5
AL5G15180 Arabidopsis lyrata HOM05D004862 ORTHO05D005841 6.6e-202 707.6 488 69.7
BcaB07g30229 Brassica carinata HOM05D004862 ORTHO05D005841 1.1e-201 706.8 488 70.1
Os02g0556400 Oryza sativa ssp. japonica HOM05D004862 ORTHO05D005841 1.1e-201 706.8 492 69.1
Carub.0005s0438 Capsella rubella HOM05D004862 ORTHO05D005841 1.3e-200 703.4 488 69.5
AUR62004780 Chenopodium quinoa HOM05D004862 ORTHO05D005841 3.1e-199 698.7 546 65.2
BcaC03g17366 Brassica carinata HOM05D004862 ORTHO05D005841 5.3e-199 698.0 512 67.4
GSVIVG01029751001 Vitis vinifera HOM05D004862 ORTHO05D005841 1.5e-193 679.9 440 74.5
Peaxi162Scf00003g03739 Petunia axillaris HOM05D004862 ORTHO05D005841 5.6e-193 677.9 417 77.5
Eucgr.G00660 Eucalyptus grandis HOM05D004862 ORTHO05D005841 2.8e-192 675.6 417 76.5
SHI16537 Sapria himalayana HOM05D004862 ORTHO05D005841 3.6e-192 675.2 488 66.6
SalBow5G3806 Salvia bowleyana HOM05D004862 ORTHO05D005841 4.0e-191 671.8 577 59.4
BcaNung06886 Brassica carinata HOM05D004862 ORTHO05D005841 1.5e-190 669.8 497 66.8
SalBow5G4932 Salvia bowleyana HOM05D004862 ORTHO05D005841 3.2e-188 662.1 602 57.0
Ciclev10008412m.g Citrus clementina HOM05D004862 ORTHO05D005841 4.6e-187 658.3 456 71.1
C02p53070 Brassica napus HOM05D004862 ORTHO05D005841 7.9e-187 657.5 512 65.0
SEGI_34202 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 1.1e-175 620.5 436 69.0
Pp3c13_18080 Physcomitrium patens HOM05D004862 ORTHO05D005841 7.6e-174 614.4 503 60.0
A02p34570 Brassica napus HOM05D004862 ORTHO05D005841 2.9e-173 612.5 417 71.0
Mapoly0006s0193 Marchantia polymorpha HOM05D004862 ORTHO05D005841 2.5e-172 609.4 492 60.4
TAR116G0002 Trochodendron aralioides HOM05D004862 ORTHO05D005841 2.3e-170 602.8 380 76.6
HPP92_004639 Vanilla planifolia HOM05D004862 ORTHO05D005841 8.7e-170 600.9 379 73.4
SMO115G0021 Selaginella moellendorffii HOM05D004862 ORTHO05D005841 1.5e-169 600.1 493 61.1
HPP92_004630 Vanilla planifolia HOM05D004862 ORTHO05D005841 1.6e-168 596.7 379 73.1
Atru.chr6.1121 Acer truncatum HOM05D004862 ORTHO05D005841 1.6e-163 580.1 366 75.7
TAR628G0283 Trochodendron aralioides HOM05D004862 ORTHO05D005841 8.2e-160 567.8 333 81.7
TPR.G31479 Trifolium pratense HOM05D004862 ORTHO05D005841 1.1e-156 557.4 348 75.9
CBR_g37214 Chara braunii HOM05D004862 ORTHO05D005841 1.3e-152 543.9 486 54.1
FAN05G4337 Fragaria x ananassa HOM05D004862 ORTHO05D005841 3.1e-151 539.3 333 78.1
Cpa.g.sc845.1 Carica papaya HOM05D004862 ORTHO05D005841 4.1e-151 538.9 333 78.4
Zm00001eb243830 Zea mays HOM05D004862 ORTHO05D005841 7.5e-145 518.1 334 75.7
BolC2t11366H Brassica oleracea HOM05D004862 ORTHO05D005841 2.9e-141 506.1 334 74.0
C02p53050 Brassica napus HOM05D004862 ORTHO05D005841 8.0e-139 498.0 325 74.2
BcaC03g17340 Brassica carinata HOM05D004862 ORTHO05D005841 7.5e-137 491.5 367 67.3
SEGI_00112 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 2.9e-133 479.6 358 67.9
CsaV3_7G014980 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.1e-132 477.6 304 74.0
C02p52870 Brassica napus HOM05D004862 ORTHO05D005841 2.8e-123 446.4 333 67.9
CsaV3_UNG189490 Cucumis sativus L. HOM05D004862 ORTHO05D005841 4.7e-99 365.9 228 74.6
Cre08.g359100 Chlamydomonas reinhardtii HOM05D004862 ORTHO05D005841 1.2e-97 361.3 444 45.0
MCO05G740 Micromonas commoda HOM05D004862 ORTHO05D005841 1.4e-95 354.4 453 42.8
PRCOL_00003583 Prasinoderma coloniale HOM05D004862 ORTHO05D005841 3.1e-90 336.7 438 42.5
Ca_29817_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 4.9e-88 329.3 210 75.2
unitig_26.g9584 Utricularia gibba HOM05D004862 ORTHO05D005841 8.7e-85 318.5 231 65.4
CsaV3_7G015000 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.2e-73 281.6 165 80.6
CsaV3_UNG187480 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.2e-73 281.6 165 80.6
Ca_25384_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 2.9e-72 276.9 186 72.0
CsaV3_7G014960 Cucumis sativus L. HOM05D004862 ORTHO05D005841 5.5e-71 272.7 165 79.4
unitig_26.g9585 Utricularia gibba HOM05D004862 ORTHO05D005841 1.9e-68 264.2 144 81.9
Cfa021801 Carpinus fangiana HOM05D004862 ORTHO05D005841 6.5e-56 222.6 423 35.5
Ca_31280_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 1.5e-44 184.9 107 83.2
CsaV3_UNG197500 Cucumis sativus L. HOM05D004862 ORTHO05D005841 4.8e-43 179.9 107 80.4
CsaV3_7G014970 Cucumis sativus L. HOM05D004862 ORTHO05D005841 2.6e-41 174.1 99 83.8
CsaV3_7G015010 Cucumis sativus L. HOM05D004862 ORTHO05D005841 4.5e-41 173.3 98 84.7
AagrBONN_evm.TU.Sc2ySwM_344.4621 Anthoceros agrestis HOM05D004862 ORTHO05D005841 2.1e-38 164.5 141 56.0
BolC2t11379H Brassica oleracea HOM05D004862 ORTHO05D005841 8.8e-37 159.1 125 64.8
Potri.003G022650 Populus trichocarpa HOM05D004862 ORTHO05D005841 4.5e-33 146.7 92 75.0
TAR628G0087 Trochodendron aralioides HOM05D004862 ORTHO05D005841 2.0e-20 104.8 67 70.1
Actinidia00239 Actinidia chinensis HOM05D004862 ORTHO05D005841 3.1e-18 97.4 87 54.0
CsaV3_7G014950 Cucumis sativus L. HOM05D004862 ORTHO05D005841 2.3e-16 91.3 65 58.5
Potri.003G022701 Populus trichocarpa HOM05D004862 ORTHO05D005841 3.8e-16 90.5 76 63.2
Cfa010153 Carpinus fangiana HOM05D004862 ORTHO05D005841 1.4e-13 82.0 70 57.1
unitig_26.g9586 Utricularia gibba HOM05D004862 ORTHO05D005841 4.0e-13 80.5 69 58.0
Dinv28090 Davidia involucrata HOM05D000259 ORTHO05D000155 9.5e-07 59.3 33 78.8
MCO05G371 Micromonas commoda HOM05D004862 ORTHO05D267887 2.8e-06 57.8 129 34.1


User provided reference genes

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