Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G5924 Papaver somniferum HOM05D004937 ORTHO05D006414 5.6e-262 907.1 482 100.0
PSO675G1521 Papaver somniferum HOM05D004937 ORTHO05D006414 4.4e-230 801.2 430 96.3
PSO675G7903 Papaver somniferum HOM05D004937 ORTHO05D006414 2.1e-224 782.3 430 92.6
PSO541G2704 Papaver somniferum HOM05D004937 ORTHO05D006414 2.6e-222 775.4 430 91.9
Nn1g07169 Nelumbo nucifera HOM05D004937 ORTHO05D006414 1.0e-154 550.8 431 66.8
CSS0033735 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 9.0e-151 537.7 430 68.8
TAR624G0274 Trochodendron aralioides HOM05D004937 ORTHO05D006414 7.1e-148 528.1 431 66.4
Aqoxy1G02086 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 2.1e-147 526.6 507 57.2
Thecc.06G222700 Theobroma cacao HOM05D004937 ORTHO05D006414 4.6e-147 525.4 444 63.3
QL05p072835 Quercus lobata HOM05D004937 ORTHO05D006414 7.9e-147 524.6 438 66.2
GSVIVG01012711001 Vitis vinifera HOM05D004937 ORTHO05D000904 1.3e-146 523.9 433 64.2
Haze_06813 Corylus avellana HOM05D004937 ORTHO05D006414 1.5e-142 510.4 435 63.7
Lj1A1232T94 Lonicera japonica HOM05D004937 ORTHO05D006414 2.9e-141 506.1 431 63.3
COL.COLO4_31792 Corchorus olitorius HOM05D004937 ORTHO05D006414 1.4e-140 503.8 432 61.1
Rhsim02G0106300 Rhododendron simsii HOM05D004937 ORTHO05D006414 1.4e-140 503.8 441 61.9
CANSAT56G3877 Cannabis sativa HOM05D004937 ORTHO05D006414 2.5e-140 503.1 439 61.7
TWI63G0901 Tripterygium wilfordii HOM05D004937 ORTHO05D006414 1.2e-139 500.7 457 60.0
vmacro15793 Vaccinium macrocarpon HOM05D004937 ORTHO05D006414 1.2e-139 500.7 432 63.0
Manes.16G005800 Manihot esculenta HOM05D004937 ORTHO05D006414 7.9e-139 498.0 455 59.3
Cc09_g01540 Coffea canephora HOM05D004937 ORTHO05D000904 1.3e-138 497.3 439 60.1
PGR042G1615 Punica granatum HOM05D004937 ORTHO05D006414 1.3e-138 497.3 442 61.1
CiPaw.09G093200 Carya illinoinensis HOM05D004937 ORTHO05D006414 2.3e-138 496.5 431 62.6
MD10G1323300 Malus domestica HOM05D004937 ORTHO05D006414 6.7e-138 495.0 469 58.2
Eucgr.D01342 Eucalyptus grandis HOM05D004937 ORTHO05D006414 8.7e-138 494.6 439 60.1
Gohir.D06G214000 Gossypium hirsutum HOM05D004937 ORTHO05D006414 8.7e-138 494.6 435 59.8
Gorai.010G252100 Gossypium raimondii HOM05D004937 ORTHO05D006414 8.7e-138 494.6 435 59.8
Prupe.4G019000 Prunus persica HOM05D004937 ORTHO05D006414 1.5e-137 493.8 481 57.0
Gohir.A06G207300 Gossypium hirsutum HOM05D004937 ORTHO05D006414 1.9e-137 493.4 435 59.5
Cpa.g.sc152.26 Carica papaya HOM05D004937 ORTHO05D006414 4.8e-136 488.8 430 60.9
Ciclev10014440m.g Citrus clementina HOM05D004937 ORTHO05D006414 8.2e-136 488.0 434 61.3
MELO3C002448.2 Cucumis melo HOM05D004937 ORTHO05D006414 1.8e-135 486.9 452 60.0
DCAR_024931 Daucus carota HOM05D004937 ORTHO05D006414 3.1e-135 486.1 432 58.8
Potri.004G010400 Populus trichocarpa HOM05D004937 ORTHO05D006414 5.8e-134 481.9 496 55.8
arahy.Tifrunner.gnm1.ann1.L1792D Arachis hypogaea HOM05D004937 ORTHO05D006414 7.6e-134 481.5 434 61.8
Phvul.003G080000 Phaseolus vulgaris HOM05D004937 ORTHO05D006414 7.6e-134 481.5 463 56.2
CsaV3_1G010670 Cucumis sativus L. HOM05D004937 ORTHO05D006414 2.2e-133 479.9 465 57.6
Sabra04G0005400 Salix brachista HOM05D004937 ORTHO05D006414 3.2e-132 476.1 504 56.3
VMungo1215G2760 Vigna mungo HOM05D004937 ORTHO05D006414 1.0e-130 471.1 457 56.0
Glyma.07G261700 Glycine max HOM05D004937 ORTHO05D006414 2.3e-130 469.9 453 55.8
Lj4g0022599 Lotus japonicus HOM05D004937 ORTHO05D006414 3.3e-129 466.1 443 57.3
Glyma.17G012400 Glycine max HOM05D004937 ORTHO05D006414 5.7e-129 465.3 429 58.5
RcHm_v2.0_Chr5g0002731 Rosa chinensis HOM05D004937 ORTHO05D006414 5.7e-129 465.3 491 53.4
Peaxi162Scf00394g00019 Petunia axillaris HOM05D004937 ORTHO05D006414 2.2e-128 463.4 452 57.1
arahy.Tifrunner.gnm1.ann1.VWCB5J Arachis hypogaea HOM05D004937 ORTHO05D006414 4.1e-127 459.1 434 59.4
MSTRG.15996 Avicennia marina HOM05D004937 ORTHO05D006414 9.0e-127 458.0 501 52.3
Peaxi162Scf00307g01425 Petunia axillaris HOM05D004937 ORTHO05D006414 2.6e-126 456.4 452 56.6
Sed0026378 Sechium edule HOM05D004937 ORTHO05D006414 1.3e-125 454.1 424 59.2
Hund23457 Selenicereus undatus HOM05D004937 ORTHO05D006414 2.2e-125 453.4 539 51.8
THA.LOC104809500 Tarenaya hassleriana HOM05D004937 ORTHO05D006414 2.2e-125 453.4 429 57.6
Thhalv10006713m.g Eutrema salsugineum HOM05D004937 ORTHO05D000904 5.0e-125 452.2 434 57.1
AL1G22990 Arabidopsis lyrata HOM05D004937 ORTHO05D006414 1.9e-124 450.3 443 56.2
HPP92_001597 Vanilla planifolia HOM05D004937 ORTHO05D006414 2.5e-124 449.9 431 57.3
Lalb_Chr12g0196051 Lupinus albus HOM05D004937 ORTHO05D006414 3.2e-124 449.5 447 56.6
Nitab4.5_0011734g0010 Nicotiana tabacum HOM05D004937 ORTHO05D006414 3.2e-124 449.5 466 54.5
HPP92_001591 Vanilla planifolia HOM05D004937 ORTHO05D006414 4.2e-124 449.1 428 56.5
Medtr4g132300 Medicago truncatula HOM05D004937 ORTHO05D006414 5.5e-124 448.7 451 54.3
FAN21G0664 Fragaria x ananassa HOM05D004937 ORTHO05D006414 7.2e-124 448.4 489 52.6
FvH4_3g01860 Fragaria vesca HOM05D004937 ORTHO05D006414 9.4e-124 448.0 489 52.4
Migut.M01330 Erythranthe guttata HOM05D004937 ORTHO05D000904 2.1e-123 446.8 476 53.4
Sc24g0000210 Simmondsia chinensis HOM05D004937 ORTHO05D006414 2.7e-123 446.4 501 47.9
AT1G11800 Arabidopsis thaliana HOM05D004937 ORTHO05D006414 4.6e-123 445.7 439 56.7
CARHR012140 Cardamine hirsuta HOM05D004937 ORTHO05D006414 6.1e-123 445.3 438 55.3
BcaB08g37429 Brassica carinata HOM05D004937 ORTHO05D006414 1.0e-122 444.5 438 56.6
PSO017G1772 Papaver somniferum HOM05D004937 ORTHO05D006414 1.4e-122 444.1 307 72.3
Carub.0001s1147 Capsella rubella HOM05D004937 ORTHO05D006414 1.8e-122 443.7 444 55.4
DCAR_028195 Daucus carota HOM05D004937 ORTHO05D006414 2.3e-122 443.4 450 54.2
Nitab4.5_0000005g0300 Nicotiana tabacum HOM05D004937 ORTHO05D006414 3.0e-122 443.0 468 54.3
PGSC0003DMG400019871 Solanum tuberosum HOM05D004937 ORTHO05D006414 3.0e-122 443.0 461 53.4
Sopen02g011270 Solanum pennellii HOM05D004937 ORTHO05D006414 5.7e-121 438.7 461 53.1
Hma1.2p1_3370F.1_g335650 Hydrangea macrophylla HOM05D004937 ORTHO05D006414 7.4e-121 438.3 432 59.7
Solyc02g032870.4 Solanum lycopersicum HOM05D004937 ORTHO05D006414 7.4e-121 438.3 462 53.0
BolC8t52333H Brassica oleracea HOM05D004937 ORTHO05D006414 9.7e-121 438.0 438 55.0
C08p47960 Brassica napus HOM05D004937 ORTHO05D006414 1.3e-120 437.6 438 54.8
BcaC07g41758 Brassica carinata HOM05D004937 ORTHO05D006414 2.8e-120 436.4 432 55.1
SalBow8G2768 Salvia bowleyana HOM05D004937 ORTHO05D006414 2.4e-119 433.3 472 52.8
EL10Ac8g20076 Beta vulgaris HOM05D004937 ORTHO05D006414 3.1e-119 433.0 541 48.1
BraA09t41776Z Brassica rapa HOM05D004937 ORTHO05D006414 1.2e-118 431.0 448 54.2
Sp1g10430 Schrenkiella parvula HOM05D004937 ORTHO05D006414 3.4e-118 429.5 439 54.7
HanXRQChr15g0470651 Helianthus annuus HOM05D004937 ORTHO05D006414 7.7e-118 428.3 493 51.9
Aa31LG1G2970 Aethionema arabicum HOM05D004937 ORTHO05D006414 2.2e-117 426.8 443 52.6
A09p64340 Brassica napus HOM05D004937 ORTHO05D007797 1.0e-114 417.9 438 53.9
TPR.G22185 Trifolium pratense HOM05D004937 ORTHO05D006414 3.0e-114 416.4 278 70.5
ECA236G0630 Erigeron canadensis HOM05D004937 ORTHO05D006414 5.1e-114 415.6 443 53.0
AUR62021933 Chenopodium quinoa HOM05D004937 ORTHO05D006414 2.6e-113 413.3 540 46.9
Psat4g006200 Pisum sativum HOM05D004937 ORTHO05D006414 2.6e-113 413.3 273 70.3
Lsat_1_v5_gn_7_16360 Lactuca sativa HOM05D004937 ORTHO05D006414 3.3e-113 412.9 483 51.6
unitig_748.g7590 Utricularia gibba HOM05D004937 ORTHO05D006414 2.2e-112 410.2 440 50.0
CDE02G2441 Ceratophyllum demersum HOM05D004937 ORTHO05D006414 8.2e-112 408.3 442 51.8
Haze_06812 Corylus avellana HOM05D004937 ORTHO05D006414 1.0e-109 401.4 269 70.3
Ca_21076_v3 Cicer arietinum L. HOM05D004937 ORTHO05D006414 9.4e-108 394.8 320 61.6
ATR0794G089 Amborella trichopoda HOM05D004937 ORTHO05D006414 2.1e-107 393.7 281 63.7
Os12g0414900 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 2.6e-105 386.7 450 47.3
QL05p072858 Quercus lobata HOM05D004937 ORTHO05D006414 2.6e-105 386.7 271 69.0
AUR62012723 Chenopodium quinoa HOM05D004937 ORTHO05D006414 1.7e-104 384.0 325 60.0
HanXRQChr05g0129391 Helianthus annuus HOM05D004937 ORTHO05D006414 9.4e-100 368.2 303 59.4
Ah.14g087960 Amaranthus hybridus HOM05D004937 ORTHO05D006414 1.6e-99 367.5 541 43.1
Zm00001eb043220 Zea mays HOM05D004937 ORTHO05D006414 1.4e-98 364.4 269 61.7
SEGI_33731 Sequoiadendron giganteum HOM05D004937 ORTHO05D006414 2.3e-98 363.6 314 55.7
Pp3c20_16850 Physcomitrium patens HOM05D004937 ORTHO05D006414 5.2e-98 362.5 314 57.3
QL05p072840 Quercus lobata HOM05D004937 ORTHO05D006414 1.5e-97 360.9 273 64.1
SHI02217 Sapria himalayana HOM05D004937 ORTHO05D006414 2.6e-97 360.1 526 42.4
Dinv20060 Davidia involucrata HOM05D004937 ORTHO05D006414 1.3e-96 357.8 286 63.6
Dinv13907 Davidia involucrata HOM05D004937 ORTHO05D006414 2.8e-96 356.7 272 62.1
Mapoly0028s0073 Marchantia polymorpha HOM05D004937 ORTHO05D006414 1.3e-93 347.8 339 52.2
Potri.004G010900 Populus trichocarpa HOM05D004937 ORTHO05D006414 3.8e-93 346.3 291 61.9
Sed0013617 Sechium edule HOM05D004937 ORTHO05D006414 2.6e-89 333.6 243 66.7
SMO361G0593 Selaginella moellendorffii HOM05D004937 ORTHO05D006414 1.1e-87 328.2 271 59.4
AagrBONN_evm.TU.Sc2ySwM_368.2060 Anthoceros agrestis HOM05D004937 ORTHO05D006414 6.6e-85 318.9 251 61.0
Migut.M01331 Erythranthe guttata HOM05D004937 ORTHO05D006414 5.5e-84 315.8 299 55.9
CBR_g38366 Chara braunii HOM05D004937 ORTHO05D006414 1.2e-83 314.7 284 54.6
ClCG03G004640 Citrullus lanatus HOM05D004937 ORTHO05D006414 1.8e-82 310.8 197 73.6
HPP92_014181 Vanilla planifolia HOM05D004937 ORTHO05D006414 3.2e-79 300.1 269 55.4
Aqoxy3G03726 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 7.3e-76 288.9 276 53.3
Aqoxy4G00762 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 9.5e-76 288.5 276 52.9
CSS0005056 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 1.6e-70 271.2 181 70.2
Zm00001eb048580 Zea mays HOM05D004937 ORTHO05D006414 6.0e-70 269.2 192 64.6
Aqoxy5G03390 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 9.5e-60 235.3 223 52.9
CSS0029720 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 4.7e-59 233.0 280 48.2
Dinv13906 Davidia involucrata HOM05D004937 ORTHO05D006414 2.2e-56 224.2 271 44.6
BcaB08g37427 Brassica carinata HOM05D004937 ORTHO05D006414 5.1e-53 213.0 182 57.1
CSS0048087 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 1.5e-52 211.5 280 45.0
Dinv13904 Davidia involucrata HOM05D004937 ORTHO05D006414 1.2e-51 208.4 221 59.3
QL05p072848 Quercus lobata HOM05D004937 ORTHO05D006414 1.1e-50 205.3 136 66.9
BcaB08g37425 Brassica carinata HOM05D004937 ORTHO05D006414 1.7e-48 198.0 137 66.4
Cre06.g305050 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 2.7e-46 190.7 303 36.0
ClCG03G004650 Citrullus lanatus HOM05D000020 ORTHO05D000904 7.8e-46 189.1 240 49.6
Mapoly0074s0008 Marchantia polymorpha HOM05D004937 ORTHO05D006414 7.8e-46 189.1 256 41.8
PRCOL_00004553 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 1.9e-44 184.5 302 39.4
Dinv13905 Davidia involucrata HOM05D004937 ORTHO05D006414 3.4e-41 173.7 103 75.7
Psat6g178560 Pisum sativum HOM05D004937 ORTHO05D006414 3.8e-40 170.2 141 60.3
MCO11G820 Micromonas commoda HOM05D004937 ORTHO05D006414 1.0e-37 162.2 300 35.0
BcaB08g37428 Brassica carinata HOM05D004937 ORTHO05D006414 9.6e-36 155.6 228 46.9
Aqoxy3G02634 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 2.0e-33 147.9 155 51.0
Lj2C267G4 Lonicera japonica HOM05D004937 ORTHO05D006414 2.1e-27 127.9 100 58.0
AagrBONN_evm.TU.Sc2ySwM_368.2061 Anthoceros agrestis HOM05D004937 ORTHO05D006414 1.4e-26 125.2 119 52.1
Cre06.g305250 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 4.0e-26 123.6 288 30.2
PRCOL_00006577 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 2.2e-24 117.9 301 30.2
PGSC0003DMG400026496 Solanum tuberosum HOM05D004937 ORTHO05D006414 7.1e-23 112.8 80 68.8
SGA_v2.0_scaffold4G01909 Striga asiatica HOM05D004937 ORTHO05D006414 3.3e-20 104.0 262 32.8
Os10g0401100 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 1.3e-13 82.0 52 65.4
Dinv30719 Davidia involucrata HOM05D004937 ORTHO05D006414 1.8e-13 81.6 95 47.4
Atru.chr10.2244 Acer truncatum HOM05D004937 ORTHO05D006414 2.3e-13 81.3 126 51.6
PSO832G4260 Papaver somniferum HOM05D004937 ORTHO05D002819 6.7e-13 79.7 67 59.7
Os07g0510300 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 6.3e-11 73.2 104 40.4
Os07g0510800 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 1.2e-09 68.9 62 50.0
FAN25G1168 Fragaria x ananassa HOM05D004937 ORTHO05D006414 1.0e-08 65.9 114 38.6
TPR.G37060 Trifolium pratense HOM05D004937 ORTHO05D006414 3.8e-08 63.9 111 35.1


User provided reference genes

Program Settings