Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G5910 Papaver somniferum HOM05D005440 ORTHO05D007314 3.8e-290 1000.7 486 100.0
PSO675G6996 Papaver somniferum HOM05D005440 ORTHO05D007314 2.1e-264 915.2 476 94.5
TAR627G1033 Trochodendron aralioides HOM05D005440 ORTHO05D007314 1.9e-188 662.9 480 71.7
Nn5g27478 Nelumbo nucifera HOM05D005440 ORTHO05D007314 1.1e-183 647.1 481 69.9
Aqoxy1G01485 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 6.0e-179 631.3 481 67.4
GSVIVG01026115001 Vitis vinifera HOM05D005440 ORTHO05D007314 3.9e-178 628.6 476 68.3
CiPaw.04G136100 Carya illinoinensis HOM05D005440 ORTHO05D007314 7.6e-174 614.4 474 66.2
Prupe.3G188100 Prunus persica HOM05D005440 ORTHO05D007314 1.2e-171 607.1 474 65.6
Hma1.2p1_1803F.1_g302990 Hydrangea macrophylla HOM05D005440 ORTHO05D007314 2.7e-171 605.9 477 65.8
Potri.016G021900 Populus trichocarpa HOM05D005440 ORTHO05D007314 1.3e-170 603.6 472 67.2
Ciclev10011552m.g Citrus clementina HOM05D005440 ORTHO05D007314 2.3e-170 602.8 476 65.5
Gorai.001G092600 Gossypium raimondii HOM05D005440 ORTHO05D007314 3.0e-170 602.4 473 65.5
Gohir.A07G081000 Gossypium hirsutum HOM05D005440 ORTHO05D007314 5.1e-170 601.7 475 65.5
Duzib138G1709 Durio zibethinus HOM05D005440 ORTHO05D007314 1.9e-169 599.7 471 66.0
Manes.09G077000 Manihot esculenta HOM05D005440 ORTHO05D007314 4.3e-169 598.6 471 66.7
MBI18_g10015_MAGBIO Magnolia biondii HOM05D005440 ORTHO05D007314 5.6e-169 598.2 449 68.2
Potri.006G023400 Populus trichocarpa HOM05D005440 ORTHO05D007314 1.6e-168 596.7 478 65.9
Cfa023527 Carpinus fangiana HOM05D005440 ORTHO05D007314 4.8e-168 595.1 475 65.3
Gohir.D07G086600 Gossypium hirsutum HOM05D005440 ORTHO05D007314 6.2e-168 594.7 480 64.8
Phvul.006G001800 Phaseolus vulgaris HOM05D005440 ORTHO05D007314 1.1e-167 594.0 476 65.5
PGR004G2684 Punica granatum HOM05D005440 ORTHO05D007314 1.1e-167 594.0 465 64.9
MD09G1136900 Malus domestica HOM05D005440 ORTHO05D007314 1.8e-167 593.2 475 64.8
TPR.G33572 Trifolium pratense HOM05D005440 ORTHO05D007314 3.1e-167 592.4 473 65.1
HPP92_001868 Vanilla planifolia HOM05D005440 ORTHO05D007314 3.1e-167 592.4 481 63.6
Atru.chr5.954 Acer truncatum HOM05D005440 ORTHO05D007314 9.0e-167 590.9 475 64.2
MELO3C026396.2 Cucumis melo HOM05D005440 ORTHO05D007314 9.0e-167 590.9 477 64.4
CsaV3_4G032220 Cucumis sativus L. HOM05D005440 ORTHO05D007314 9.0e-167 590.9 476 64.3
MD17G1127100 Malus domestica HOM05D005440 ORTHO05D007314 9.0e-167 590.9 468 65.4
CANSAT64G0070 Cannabis sativa HOM05D005440 ORTHO05D007314 3.4e-166 589.0 471 66.2
Lalb_Chr22g0360841 Lupinus albus HOM05D005440 ORTHO05D007314 1.3e-165 587.0 470 64.9
Glyma.20G065600 Glycine max HOM05D005440 ORTHO05D007314 2.9e-165 585.9 473 64.9
Sc15g0002420 Simmondsia chinensis HOM05D005440 ORTHO05D007314 3.8e-165 585.5 478 63.2
Cc07_g20260 Coffea canephora HOM05D005440 ORTHO05D007314 6.5e-165 584.7 469 64.8
Lj6g0026846 Lotus japonicus HOM05D005440 ORTHO05D007314 6.5e-165 584.7 470 64.7
CAN.G1156.52 Capsicum annuum HOM05D005440 ORTHO05D007314 8.4e-165 584.3 465 64.9
RcHm_v2.0_Chr2g0153881 Rosa chinensis HOM05D005440 ORTHO05D007314 1.4e-164 583.6 469 65.0
THA.LOC104826162 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 1.4e-164 583.6 473 63.6
CSS0043590 Camellia sinensis var. sinensis HOM05D005440 ORTHO05D007314 3.2e-164 582.4 466 65.0
Medtr3g081180 Medicago truncatula HOM05D005440 ORTHO05D007314 3.2e-164 582.4 485 62.9
Ca_16308_v3 Cicer arietinum L. HOM05D005440 ORTHO05D007314 7.1e-164 581.3 481 63.6
Glyma.13G003900 Glycine max HOM05D005440 ORTHO05D007314 1.2e-163 580.5 479 64.5
Lalb_Chr24g0402811 Lupinus albus HOM05D005440 ORTHO05D007314 1.6e-163 580.1 480 63.1
THA.LOC104800970 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 3.5e-163 578.9 471 64.5
Rhsim12G0014000 Rhododendron simsii HOM05D005440 ORTHO05D007314 3.0e-162 575.9 452 66.4
Duzib133G0846 Durio zibethinus HOM05D005440 ORTHO05D007314 8.7e-162 574.3 469 63.8
Sopen05g034920 Solanum pennellii HOM05D005440 ORTHO05D007314 8.7e-162 574.3 465 64.7
TWI60G0164 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 1.9e-161 573.2 467 63.8
Solyc05g056520.4 Solanum lycopersicum HOM05D005440 ORTHO05D007314 3.3e-161 572.4 465 64.7
ATR0763G213 Amborella trichopoda HOM05D005440 ORTHO05D007314 2.1e-160 569.7 473 62.8
Migut.L00575 Erythranthe guttata HOM05D005440 ORTHO05D007314 6.9e-159 564.7 484 61.2
Sed0022130 Sechium edule HOM05D005440 ORTHO05D007314 7.6e-158 561.2 492 61.2
Eucgr.K01335 Eucalyptus grandis HOM05D005440 ORTHO05D007314 3.8e-157 558.9 506 60.1
FAN02G0818 Fragaria x ananassa HOM05D005440 ORTHO05D007314 8.5e-157 557.8 463 62.2
AL4G27520 Arabidopsis lyrata HOM05D005440 ORTHO05D007314 1.4e-156 557.0 474 61.2
BcaC02g07946 Brassica carinata HOM05D005440 ORTHO05D007314 3.2e-156 555.8 469 60.8
BolC4t27650H Brassica oleracea HOM05D005440 ORTHO05D007314 3.2e-156 555.8 469 60.8
FvH4_6g39770 Fragaria vesca HOM05D005440 ORTHO05D007314 3.2e-156 555.8 465 62.2
BcaB06g28584 Brassica carinata HOM05D005440 ORTHO05D007314 1.6e-155 553.5 470 62.6
FAN14G2598 Fragaria x ananassa HOM05D005440 ORTHO05D007314 2.1e-155 553.1 466 62.0
AT2G32170 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 3.6e-155 552.4 473 60.5
A04p24740 Brassica napus HOM05D005440 ORTHO05D007314 3.6e-155 552.4 470 60.4
CARHR125970 Cardamine hirsuta HOM05D005440 ORTHO05D007314 7.9e-155 551.2 470 60.9
C04p61670 Brassica napus HOM05D005440 ORTHO05D007314 2.3e-154 549.7 469 60.6
Carub.0004s1349 Capsella rubella HOM05D005440 ORTHO05D007314 3.0e-154 549.3 465 61.3
HanXRQChr15g0468881 Helianthus annuus HOM05D005440 ORTHO05D007314 1.5e-153 547.0 467 61.7
Sabra16G0027400 Salix brachista HOM05D005440 ORTHO05D007314 1.1e-151 540.8 467 61.0
MSTRG.15262 Avicennia marina HOM05D005440 ORTHO05D007314 2.4e-151 539.7 491 58.5
Potri.016G021400 Populus trichocarpa HOM05D005440 ORTHO05D007314 2.4e-151 539.7 432 65.7
Sp4g14550 Schrenkiella parvula HOM05D005440 ORTHO05D007314 2.4e-151 539.7 470 61.5
Os05g0511300 Oryza sativa ssp. japonica HOM05D005440 ORTHO05D007314 4.1e-151 538.9 483 59.4
Actinidia12520 Actinidia chinensis HOM05D005440 ORTHO05D007314 5.3e-151 538.5 449 62.1
arahy.Tifrunner.gnm1.ann1.TU4NXX Arachis hypogaea HOM05D005440 ORTHO05D007314 4.5e-150 535.4 469 62.5
BraA04t17992Z Brassica rapa HOM05D005440 ORTHO05D007314 5.0e-149 531.9 525 54.5
ECA233G3205 Erigeron canadensis HOM05D005440 ORTHO05D007314 1.9e-148 530.0 463 60.0
Peaxi162Scf00525g00411 Petunia axillaris HOM05D005440 ORTHO05D007314 2.5e-148 529.6 487 58.3
Sabra16G0024900 Salix brachista HOM05D005440 ORTHO05D007314 6.1e-147 525.0 454 61.0
DCAR_019996 Daucus carota HOM05D005440 ORTHO05D007314 9.7e-145 517.7 476 59.2
Zm00001eb292540 Zea mays HOM05D005440 ORTHO05D007314 8.2e-144 514.6 489 58.1
TWI60G0012 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 2.4e-143 513.1 464 58.6
vmacro08748 Vaccinium macrocarpon HOM05D005440 ORTHO05D007314 2.2e-141 506.5 468 59.2
SEGI_34757 Sequoiadendron giganteum HOM05D005440 ORTHO05D007314 2.9e-141 506.1 541 51.9
AUR62017608 Chenopodium quinoa HOM05D005440 ORTHO05D007314 1.4e-140 503.8 464 58.8
Oeu053137.1 Olea europaea HOM05D005440 ORTHO05D007314 1.5e-137 493.8 482 56.0
AT2G32160 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 1.3e-136 490.7 463 56.8
Cpa.g.sc8.301 Carica papaya HOM05D005440 ORTHO05D007314 1.2e-134 484.2 412 62.4
SalBow5G0813 Salvia bowleyana HOM05D005440 ORTHO05D007314 1.6e-134 483.8 392 62.2
EL10Ac9g22859 Beta vulgaris HOM05D005440 ORTHO05D007314 3.5e-134 482.6 475 56.2
CDE06G0633 Ceratophyllum demersum HOM05D005440 ORTHO05D007314 1.0e-133 481.1 394 63.2
unitig_32.g10657 Utricularia gibba HOM05D005440 ORTHO05D007314 4.2e-132 475.7 479 54.5
AUR62015149 Chenopodium quinoa HOM05D005440 ORTHO05D007314 5.5e-132 475.3 504 53.0
Aa31LG5G4880 Aethionema arabicum HOM05D005440 ORTHO05D007314 3.6e-131 472.6 468 56.4
Thhalv10017571m.g Eutrema salsugineum HOM05D005440 ORTHO05D007314 2.3e-130 469.9 394 61.7
Nitab4.5_0000496g0020 Nicotiana tabacum HOM05D005440 ORTHO05D007314 8.8e-130 468.0 444 56.8
ClCG11G016720 Citrullus lanatus HOM05D005440 ORTHO05D007314 7.5e-129 464.9 483 55.7
Pp3c17_14810 Physcomitrium patens HOM05D005440 ORTHO05D007314 9.1e-127 458.0 502 51.2
Thecc.01G171200 Theobroma cacao HOM05D005440 ORTHO05D007314 3.5e-126 456.1 381 64.0
Lsat_1_v5_gn_5_68301 Lactuca sativa HOM05D005440 ORTHO05D007314 4.2e-124 449.1 486 51.6
Carub.0004s1348 Capsella rubella HOM05D005440 ORTHO05D007314 9.4e-124 448.0 476 51.9
AagrBONN_evm.TU.Sc2ySwM_368.3314 Anthoceros agrestis HOM05D005440 ORTHO05D007314 3.0e-122 443.0 471 51.8
QL04p060188 Quercus lobata HOM05D005440 ORTHO05D007314 3.4e-121 439.5 260 77.7
FAN05G0095 Fragaria x ananassa HOM05D005440 ORTHO05D007314 1.4e-119 434.1 463 53.3
Mapoly0014s0077 Marchantia polymorpha HOM05D005440 ORTHO05D007314 2.9e-117 426.4 548 45.3
Pp3c1_31970 Physcomitrium patens HOM05D005440 ORTHO05D007314 4.9e-112 409.1 514 47.9
Sabra06G0017100 Salix brachista HOM05D005440 ORTHO05D007314 6.3e-112 408.7 511 49.3
Haze_13637 Corylus avellana HOM05D005440 ORTHO05D007314 1.8e-111 407.1 378 57.9
DCAR_009586 Daucus carota HOM05D005440 ORTHO05D007314 4.5e-110 402.5 251 75.7
Dinv02983 Davidia involucrata HOM05D005440 ORTHO05D007314 1.3e-109 401.0 335 63.9
FAN09G4325 Fragaria x ananassa HOM05D005440 ORTHO05D007314 2.0e-105 387.1 454 48.7
Psat5g108080 Pisum sativum HOM05D005440 ORTHO05D007314 7.3e-100 368.6 358 57.3
arahy.Tifrunner.gnm1.ann1.Z94T11 Arachis hypogaea HOM05D005440 ORTHO05D007314 8.3e-96 355.1 391 54.0
Sabra16G0025200 Salix brachista HOM05D005440 ORTHO05D007314 9.5e-92 341.7 351 55.0
SMO358G0560 Selaginella moellendorffii HOM05D005440 ORTHO05D007314 8.9e-90 335.1 226 68.6
CBR_g29536 Chara braunii HOM05D000019 ORTHO05D000048 7.1e-87 325.5 608 36.8
Ah.01g013380 Amaranthus hybridus HOM05D005440 ORTHO05D007314 1.0e-85 321.6 350 52.6
Nitab4.5_0002704g0030 Nicotiana tabacum HOM05D005440 ORTHO05D007314 1.5e-84 317.8 423 48.5
Sabra16G0027100 Salix brachista HOM05D005440 ORTHO05D007314 2.1e-83 313.9 474 43.5
Cre03.g188950 Chlamydomonas reinhardtii HOM05D005440 ORTHO05D007314 9.9e-73 278.5 465 37.8
MCO05G304 Micromonas commoda HOM05D005440 ORTHO05D007314 1.9e-71 274.2 262 50.0
CARHR125960 Cardamine hirsuta HOM05D005440 ORTHO05D007314 4.8e-67 259.6 177 67.8
PRCOL_00002828 Prasinoderma coloniale HOM05D005440 ORTHO05D007314 6.0e-62 242.7 268 45.1
Aqoxy1G03388 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 1.3e-61 241.5 397 41.6
Atru.ctg1434.11 Acer truncatum HOM05D005440 ORTHO05D007314 3.8e-56 223.4 306 41.5
Lj4C830T18 Lonicera japonica HOM05D005440 ORTHO05D007314 1.7e-48 198.0 113 79.6
Cfa026418 Carpinus fangiana HOM05D005440 ORTHO05D007314 4.9e-48 196.4 311 37.0
SGA_v2.0_scaffold35G13960 Striga asiatica HOM05D005440 ORTHO05D007314 3.2e-47 193.7 118 75.4
Psat5g108160 Pisum sativum HOM05D005440 ORTHO05D007314 6.7e-45 186.0 109 76.1
CARHR125950 Cardamine hirsuta HOM05D005440 ORTHO05D007314 1.4e-42 178.3 103 79.6
Hund08219 Selenicereus undatus HOM05D005440 ORTHO05D007314 4.3e-36 156.8 86 84.9
RcHm_v2.0_Chr2g0172691 Rosa chinensis HOM05D005440 ORTHO05D007314 1.6e-22 111.7 60 78.3
Hund08218 Selenicereus undatus HOM05D005440 ORTHO05D007314 2.6e-20 104.4 81 61.7
Lj4A830T38 Lonicera japonica HOM05D005440 ORTHO05D007314 7.4e-20 102.8 59 79.7
SEGI_40090 Sequoiadendron giganteum HOM05D005440 ORTHO05D034043 2.0e-12 78.2 63 61.9
CARHR125940 Cardamine hirsuta HOM05D005440 ORTHO05D034043 5.7e-12 76.6 72 54.2
RcHm_v2.0_Chr5g0059521 Rosa chinensis HOM05D005440 ORTHO05D007314 9.7e-12 75.9 41 80.5
Dinv02985 Davidia involucrata HOM05D005440 ORTHO05D034043 4.8e-11 73.6 59 69.5
CAN.G93.4 Capsicum annuum HOM05D000541 ORTHO05D000137 2.9e-08 64.3 96 40.6
CAN.G62.19 Capsicum annuum HOM05D001673 ORTHO05D013418 3.2e-07 60.8 42 69.0
CAN.G80.1 Capsicum annuum HOM05D001673 ORTHO05D022156 4.2e-07 60.5 45 64.4
CAN.G1245.16 Capsicum annuum HOM05D001673 ORTHO05D022156 4.7e-06 57.0 44 61.4


User provided reference genes

Program Settings