Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G5829 Papaver somniferum HOM05D001775 ORTHO05D006205 2.4e-95 352.1 168 100.0
PSO675G2258 Papaver somniferum HOM05D001775 ORTHO05D006205 4.6e-94 347.8 168 98.2
Hund05085 Selenicereus undatus HOM05D001775 ORTHO05D006205 1.3e-72 276.6 168 72.6
GSVIVG01013411001 Vitis vinifera HOM05D001775 ORTHO05D006205 1.3e-72 276.6 168 72.0
CSS0024195 Camellia sinensis var. sinensis HOM05D001775 ORTHO05D006205 5.5e-71 271.2 168 70.2
Hma1.2p1_0612F.1_g189000 Hydrangea macrophylla HOM05D001775 ORTHO05D006205 7.1e-71 270.8 169 72.2
Actinidia15517 Actinidia chinensis HOM05D001775 ORTHO05D006205 9.3e-71 270.4 167 70.1
QL02p015365 Quercus lobata HOM05D001775 ORTHO05D006205 1.6e-70 269.6 167 71.3
QL02p015396 Quercus lobata HOM05D001775 ORTHO05D006205 1.6e-70 269.6 167 71.3
CiPaw.07G134900 Carya illinoinensis HOM05D001775 ORTHO05D006205 2.1e-70 269.2 168 70.2
Ciclev10002700m.g Citrus clementina HOM05D001775 ORTHO05D006205 4.6e-70 268.1 168 69.6
Cfa014124 Carpinus fangiana HOM05D001775 ORTHO05D006205 7.9e-70 267.3 168 69.0
Manes.18G002900 Manihot esculenta HOM05D001775 ORTHO05D006205 3.0e-69 265.4 168 70.8
Potri.005G255100 Populus trichocarpa HOM05D001775 ORTHO05D006205 1.6e-67 259.6 168 66.7
FAN08G0076 Fragaria x ananassa HOM05D001775 ORTHO05D006205 3.7e-67 258.5 168 65.5
FvH4_5g25920 Fragaria vesca HOM05D001775 ORTHO05D006205 4.8e-67 258.1 168 65.5
FAN13G2435 Fragaria x ananassa HOM05D001775 ORTHO05D006205 4.8e-67 258.1 168 65.5
FAN04G1208 Fragaria x ananassa HOM05D001775 ORTHO05D006205 8.2e-67 257.3 168 64.9
MD06G1005500 Malus domestica HOM05D001775 ORTHO05D006205 8.2e-67 257.3 168 67.9
RcHm_v2.0_Chr7g0216421 Rosa chinensis HOM05D001775 ORTHO05D006205 8.2e-67 257.3 168 66.1
Cpa.g.sc26.151 Carica papaya HOM05D001775 ORTHO05D006205 1.4e-66 256.5 170 66.5
Thecc.08G064000 Theobroma cacao HOM05D001775 ORTHO05D006205 5.3e-66 254.6 168 66.7
Oeu016871.1 Olea europaea HOM05D001775 ORTHO05D006205 1.2e-65 253.4 170 65.3
Prupe.5G006800 Prunus persica HOM05D001775 ORTHO05D006205 1.5e-65 253.1 163 67.5
TWI12G0153 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 2.0e-65 252.7 168 64.9
Oeu019572.1 Olea europaea HOM05D001775 ORTHO05D006205 1.3e-64 250.0 170 63.5
Ca_15392_v3 Cicer arietinum L. HOM05D001775 ORTHO05D006205 2.2e-64 249.2 168 64.3
Cc10_g00340 Coffea canephora HOM05D001775 ORTHO05D006205 2.9e-64 248.8 168 63.1
TAR628G0191 Trochodendron aralioides HOM05D001775 ORTHO05D006205 2.9e-64 248.8 168 67.9
Sabra05G0197600 Salix brachista HOM05D001775 ORTHO05D006205 3.8e-64 248.4 168 66.1
Haze_22846 Corylus avellana HOM05D001775 ORTHO05D006205 6.5e-64 247.7 172 64.0
Phvul.009G007300 Phaseolus vulgaris HOM05D001775 ORTHO05D006205 6.5e-64 247.7 168 65.5
Eucgr.F01803 Eucalyptus grandis HOM05D001775 ORTHO05D006205 8.4e-64 247.3 168 64.3
arahy.Tifrunner.gnm1.ann1.62LGBX Arachis hypogaea HOM05D001775 ORTHO05D006205 2.5e-63 245.7 168 65.5
Glyma.06G015300 Glycine max HOM05D001775 ORTHO05D006205 3.2e-63 245.4 168 64.9
Hund01795 Selenicereus undatus HOM05D001775 ORTHO05D006205 9.3e-63 243.8 168 61.3
MBI08_g29079_MAGBIO Magnolia biondii HOM05D001775 ORTHO05D006205 1.2e-62 243.4 170 67.6
Sc02g0009220 Simmondsia chinensis HOM05D005712 ORTHO05D007865 1.2e-62 243.4 153 71.2
arahy.Tifrunner.gnm1.ann1.NA36AX Arachis hypogaea HOM05D001775 ORTHO05D006205 2.1e-62 242.7 168 64.9
DCAR_016792 Daucus carota HOM05D001775 ORTHO05D006205 6.1e-62 241.1 168 61.3
Gohir.A05G177800 Gossypium hirsutum HOM05D001775 ORTHO05D006205 1.0e-61 240.4 168 64.9
Gorai.009G186200 Gossypium raimondii HOM05D001775 ORTHO05D006205 1.3e-61 240.0 168 64.3
Gohir.D05G181200 Gossypium hirsutum HOM05D001775 ORTHO05D006205 3.0e-61 238.8 168 64.3
ClCG08G009240 Citrullus lanatus HOM05D001775 ORTHO05D006205 3.9e-61 238.4 168 61.3
Lalb_Chr11g0061401 Lupinus albus HOM05D001775 ORTHO05D006205 2.5e-60 235.7 168 60.1
AUR62035157 Chenopodium quinoa HOM05D001775 ORTHO05D006205 4.3e-60 235.0 170 60.0
AUR62024107 Chenopodium quinoa HOM05D001775 ORTHO05D006205 1.3e-59 233.4 170 59.4
PGR083G1854 Punica granatum HOM05D001775 ORTHO05D006205 2.8e-59 232.3 184 59.8
TPR.G38180 Trifolium pratense HOM05D001775 ORTHO05D006205 3.7e-59 231.9 179 56.4
EL10Ac1g01895 Beta vulgaris HOM05D001775 ORTHO05D006205 4.8e-59 231.5 170 60.6
Sp5g31560 Schrenkiella parvula HOM05D001775 ORTHO05D006205 6.3e-59 231.1 168 59.5
Sed0015170 Sechium edule HOM05D001775 ORTHO05D006205 1.1e-58 230.3 168 58.3
AL2G36510 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 4.1e-58 228.4 168 58.9
BcaB07g32074 Brassica carinata HOM05D001775 ORTHO05D006205 1.5e-57 226.5 168 59.5
A06p16800 Brassica napus HOM05D001775 ORTHO05D009111 1.5e-57 226.5 168 58.9
Thhalv10019232m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 1.5e-57 226.5 168 58.9
vmacro21778 Vaccinium macrocarpon HOM05D001775 ORTHO05D006205 1.5e-57 226.5 205 52.7
C06p50600 Brassica napus HOM05D001775 ORTHO05D006205 2.0e-57 226.1 168 59.5
CARHR069960 Cardamine hirsuta HOM05D001775 ORTHO05D006205 2.0e-57 226.1 168 60.1
CsaV3_6G031380 Cucumis sativus L. HOM05D001775 ORTHO05D006205 2.0e-57 226.1 168 57.7
BcaC05g25983 Brassica carinata HOM05D001775 ORTHO05D006205 2.6e-57 225.7 168 58.9
BraA06t24788Z Brassica rapa HOM05D001775 ORTHO05D006205 2.6e-57 225.7 168 58.9
CARHR021240 Cardamine hirsuta HOM05D001775 ORTHO05D006205 2.6e-57 225.7 168 60.1
C05p19360 Brassica napus HOM05D001775 ORTHO05D009111 3.4e-57 225.3 168 58.9
BolC5t30639H Brassica oleracea HOM05D001775 ORTHO05D006205 3.4e-57 225.3 168 58.9
Atru.chr13.81 Acer truncatum HOM05D001775 ORTHO05D006205 5.9e-57 224.6 141 70.2
AT1G76405 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 5.9e-57 224.6 168 57.1
BcaC08g47254 Brassica carinata HOM05D001775 ORTHO05D006205 7.7e-57 224.2 168 58.9
A07p42030 Brassica napus HOM05D001775 ORTHO05D006205 7.7e-57 224.2 168 58.9
BolC6t40085H Brassica oleracea HOM05D001775 ORTHO05D006205 7.7e-57 224.2 168 58.9
BraA07t31733Z Brassica rapa HOM05D001775 ORTHO05D006205 7.7e-57 224.2 168 58.9
BcaC08g47138 Brassica carinata HOM05D001775 ORTHO05D006205 1.0e-56 223.8 168 59.5
CAN.G1330.2 Capsicum annuum HOM05D001775 ORTHO05D006205 1.0e-56 223.8 168 60.1
AL1G33820 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 2.2e-56 222.6 168 58.9
Thhalv10008937m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 2.2e-56 222.6 168 58.3
Sp1g18510 Schrenkiella parvula HOM05D001775 ORTHO05D006205 3.8e-56 221.9 168 57.7
Carub.0001s2027 Capsella rubella HOM05D001775 ORTHO05D006205 5.0e-56 221.5 168 57.7
AT1G20816 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 1.9e-55 219.5 168 57.7
Carub.0002s2331 Capsella rubella HOM05D001775 ORTHO05D006205 1.9e-55 219.5 168 56.5
Peaxi162Scf00680g00415 Petunia axillaris HOM05D001775 ORTHO05D006205 3.2e-55 218.8 168 57.7
SGA_v2.0_scaffold133G34600 Striga asiatica HOM05D001775 ORTHO05D006205 3.2e-55 218.8 169 59.2
TWI56G1014 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 3.2e-55 218.8 201 51.2
A07p28510 Brassica napus HOM05D001775 ORTHO05D006205 4.2e-55 218.4 169 60.4
BraA07t30489Z Brassica rapa HOM05D001775 ORTHO05D006205 4.2e-55 218.4 169 60.4
HPP92_015233 Vanilla planifolia HOM05D001775 ORTHO05D006205 4.2e-55 218.4 168 58.3
BolC6t38332H Brassica oleracea HOM05D001775 ORTHO05D006205 5.5e-55 218.0 168 59.5
MSTRG.24916 Avicennia marina HOM05D001775 ORTHO05D006205 7.2e-55 217.6 168 55.4
THA.LOC104813743 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 7.2e-55 217.6 168 57.1
BcaC08g45531 Brassica carinata HOM05D001775 ORTHO05D006205 1.2e-54 216.9 168 58.9
C06p32060 Brassica napus HOM05D001775 ORTHO05D006205 1.2e-54 216.9 168 58.9
ECA232G0408 Erigeron canadensis HOM05D000593 ORTHO05D006205 1.2e-54 216.9 155 61.9
Lsat_1_v5_gn_9_41801 Lactuca sativa HOM05D001775 ORTHO05D006205 2.7e-54 215.7 182 54.9
THA.LOC104811999 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 3.6e-54 215.3 168 57.7
Aa31LG4G6480 Aethionema arabicum HOM05D001775 ORTHO05D006205 4.6e-54 214.9 173 57.8
SalBow7G0166 Salvia bowleyana HOM05D001775 ORTHO05D006205 4.6e-54 214.9 168 54.8
Nitab4.5_0001756g0150 Nicotiana tabacum HOM05D001775 ORTHO05D006205 6.1e-54 214.5 169 58.6
Nitab4.5_0029491g0010 Nicotiana tabacum HOM05D001775 ORTHO05D006205 6.1e-54 214.5 169 58.6
HanXRQChr05g0144711 Helianthus annuus HOM05D001775 ORTHO05D006205 7.9e-54 214.2 196 49.5
BcaB02g07061 Brassica carinata HOM05D001775 ORTHO05D006205 1.0e-53 213.8 169 58.0
HanXRQChr14g0427901 Helianthus annuus HOM05D001775 ORTHO05D006205 1.0e-53 213.8 165 57.0
HanXRQChr15g0492581 Helianthus annuus HOM05D001775 ORTHO05D006205 1.4e-53 213.4 189 52.4
Medtr3g115990 Medicago truncatula HOM05D001775 ORTHO05D006205 1.4e-53 213.4 205 50.2
PGSC0003DMG400009918 Solanum tuberosum HOM05D001775 ORTHO05D006205 3.0e-53 212.2 168 56.0
Solyc04g082680.3 Solanum lycopersicum HOM05D001775 ORTHO05D006205 3.9e-53 211.8 168 56.0
MELO3C026523.2 Cucumis melo HOM05D001775 ORTHO05D006205 1.1e-52 210.3 193 50.8
Migut.C00377 Erythranthe guttata HOM05D001775 ORTHO05D006205 2.0e-52 209.5 168 53.6
Sopen04g036310 Solanum pennellii HOM05D001775 ORTHO05D006205 2.5e-52 209.1 168 55.4
Rhsim06G0004200 Rhododendron simsii HOM05D001775 ORTHO05D006205 3.3e-52 208.8 237 46.4
Ah.00g001090 Amaranthus hybridus HOM05D001775 ORTHO05D006205 2.2e-51 206.1 172 52.9
Lsat_1_v5_gn_2_1320 Lactuca sativa HOM05D001775 ORTHO05D006205 1.2e-49 200.3 188 48.9
Manes.05G125900 Manihot esculenta HOM05D001775 ORTHO05D006205 1.2e-49 200.3 137 65.0
ECA238G0508 Erigeron canadensis HOM05D001775 ORTHO05D006205 6.5e-48 194.5 190 46.8
COL.COLO4_36626 Corchorus olitorius HOM05D001775 ORTHO05D006205 1.1e-47 193.7 140 62.9
ATR0807G198 Amborella trichopoda HOM05D001775 ORTHO05D006205 1.4e-47 193.4 169 55.0
FAN18G0260 Fragaria x ananassa HOM05D001775 ORTHO05D006205 2.3e-45 186.0 125 62.4
unitig_0.g2075 Utricularia gibba HOM05D001775 ORTHO05D006205 8.8e-45 184.1 190 46.8
Dinv31976 Davidia involucrata HOM05D001775 ORTHO05D000295 7.4e-44 181.0 167 50.9
Psat5g008840 Pisum sativum HOM05D001775 ORTHO05D006205 1.7e-43 179.9 151 56.3
Duzib116G0384 Durio zibethinus HOM05D001775 ORTHO05D006205 2.2e-43 179.5 168 52.4
Lj4A6T36 Lonicera japonica HOM05D001775 ORTHO05D006205 1.9e-39 166.4 111 63.1
CDE05G0488 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 4.2e-39 165.2 145 49.7
Os02g0832200 Oryza sativa ssp. japonica HOM05D001775 ORTHO05D006205 1.6e-38 163.3 186 46.2
Mapoly0001s0026 Marchantia polymorpha HOM05D001775 ORTHO05D006205 8.0e-38 161.0 169 43.2
Zm00001eb259570 Zea mays HOM05D001775 ORTHO05D006205 1.8e-37 159.8 174 44.8
CANSAT25G3735 Cannabis sativa HOM05D001775 ORTHO05D006205 2.3e-37 159.5 104 65.4
Duzib041G0706 Durio zibethinus HOM05D001775 ORTHO05D006205 2.3e-37 159.5 168 48.2
Rhsim06G0004000 Rhododendron simsii HOM05D005712 ORTHO05D007865 3.0e-37 159.1 124 60.5
Pp3c16_8850 Physcomitrium patens HOM05D001775 ORTHO05D006205 8.8e-37 157.5 169 43.2
CDE05G0091 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 2.0e-36 156.4 173 45.1
Nn5g31022 Nelumbo nucifera HOM05D001775 ORTHO05D006205 5.9e-33 144.8 168 44.6
VMungo1309G1483 Vigna mungo HOM05D001775 ORTHO05D006205 5.5e-31 138.3 162 46.9
arahy.Tifrunner.gnm1.ann1.5GY58N Arachis hypogaea HOM05D001775 ORTHO05D006205 2.7e-30 136.0 97 64.9
arahy.Tifrunner.gnm1.ann1.3KDH9X Arachis hypogaea HOM05D001775 ORTHO05D006205 1.2e-28 130.6 91 63.7
MCO07G511 Micromonas commoda HOM05D001775 ORTHO05D006205 5.7e-28 128.3 171 38.6
HPP92_015234 Vanilla planifolia HOM05D001775 ORTHO05D006205 8.3e-27 124.4 107 53.3
PRCOL_00001546 Prasinoderma coloniale HOM05D001775 ORTHO05D006205 1.1e-26 124.0 169 36.1
SMO117G0070 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 1.1e-23 114.0 164 37.2
AagrBONN_evm.TU.Sc2ySwM_344.4857 Anthoceros agrestis HOM05D001775 ORTHO05D006205 3.2e-23 112.5 142 37.3
SMO114G0103 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 5.5e-23 111.7 143 39.2
arahy.Tifrunner.gnm1.ann1.S8I99S Arachis hypogaea HOM05D001775 ORTHO05D006205 6.1e-22 108.2 86 62.8
AagrBONN_evm.TU.Sc2ySwM_362.1823 Anthoceros agrestis HOM05D001775 ORTHO05D006205 9.8e-20 100.9 171 31.6
CBR_g44541 Chara braunii HOM05D001775 ORTHO05D006205 1.7e-19 100.1 169 30.8
Pp3c5_19490 Physcomitrium patens HOM05D001775 ORTHO05D006205 4.9e-19 98.6 98 43.9
arahy.Tifrunner.gnm1.ann1.FUJ1Q4 Arachis hypogaea HOM05D001795 ORTHO05D006205 2.9e-16 89.4 69 59.4
Nitab4.5_0005347g0040 Nicotiana tabacum HOM05D001775 ORTHO05D006205 9.5e-15 84.3 60 63.3
Sc15g0004100 Simmondsia chinensis HOM05D001775 ORTHO05D006205 8.0e-06 54.7 146 27.4


User provided reference genes

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