Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G5588 Papaver somniferum HOM05D004553 ORTHO05D005426 2.6e-151 538.9 313 100.0
PSO675G7515 Papaver somniferum HOM05D004553 ORTHO05D005426 3.5e-148 528.5 313 93.6
PSO832G2284 Papaver somniferum HOM05D004553 ORTHO05D005426 1.5e-135 486.5 313 91.4
MBI17_g17502_MAGBIO Magnolia biondii HOM05D004553 ORTHO05D005426 1.9e-117 426.4 307 75.9
Aqoxy5G00280 Aquilegia oxysepala HOM05D004553 ORTHO05D005426 7.4e-114 414.5 307 76.5
Nn3g19599 Nelumbo nucifera HOM05D004553 ORTHO05D005426 1.7e-113 413.3 307 72.6
Dinv34597 Davidia involucrata HOM05D004553 ORTHO05D005426 8.2e-113 411.0 311 71.7
Actinidia21228 Actinidia chinensis HOM05D004553 ORTHO05D005426 5.3e-112 408.3 310 71.6
Actinidia23392 Actinidia chinensis HOM05D004553 ORTHO05D005426 1.0e-110 404.1 310 71.0
TAR365G0062 Trochodendron aralioides HOM05D004553 ORTHO05D005426 1.3e-110 403.7 299 72.9
GSVIVG01028297001 Vitis vinifera HOM05D004553 ORTHO05D005426 5.0e-110 401.7 308 75.3
Hma1.2p1_0273F.1_g109950 Hydrangea macrophylla HOM05D004553 ORTHO05D005426 1.1e-109 400.6 311 69.5
HanXRQChr10g0281111 Helianthus annuus HOM05D004553 ORTHO05D005426 2.5e-109 399.4 308 69.8
Ciclev10021217m.g Citrus clementina HOM05D004553 ORTHO05D005426 5.5e-109 398.3 306 70.3
Gohir.A07G211100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 7.2e-109 397.9 305 70.2
Gohir.D07G217100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 4.7e-108 395.2 305 69.8
Nitab4.5_0000500g0290 Nicotiana tabacum HOM05D004553 ORTHO05D005426 4.0e-107 392.1 311 68.2
Atru.chr5.1915 Acer truncatum HOM05D004553 ORTHO05D005426 5.2e-107 391.7 310 72.3
Migut.D00406 Erythranthe guttata HOM05D004553 ORTHO05D005426 5.2e-107 391.7 308 68.5
Eucgr.K03287 Eucalyptus grandis HOM05D004553 ORTHO05D005426 5.2e-107 391.7 307 75.9
Lsat_1_v5_gn_9_9101 Lactuca sativa HOM05D004553 ORTHO05D005426 5.2e-107 391.7 308 73.4
Gorai.001G251500 Gossypium raimondii HOM05D004553 ORTHO05D005426 6.7e-107 391.3 305 69.5
AUR62024744 Chenopodium quinoa HOM05D004553 ORTHO05D005426 8.8e-107 391.0 308 67.9
AUR62011903 Chenopodium quinoa HOM05D004553 ORTHO05D005426 1.2e-106 390.6 308 67.9
Nitab4.5_0009451g0050 Nicotiana tabacum HOM05D004553 ORTHO05D005426 1.2e-106 390.6 311 68.8
CAN.G572.12 Capsicum annuum HOM05D004553 ORTHO05D005426 1.5e-106 390.2 311 68.2
Cfa002394 Carpinus fangiana HOM05D004553 ORTHO05D005426 2.6e-106 389.4 306 69.0
Solyc08g077830.1 Solanum lycopersicum HOM05D004553 ORTHO05D005426 2.6e-106 389.4 311 68.2
PGR044G0761 Punica granatum HOM05D004553 ORTHO05D005426 4.4e-106 388.7 307 68.1
Sopen08g026340 Solanum pennellii HOM05D004553 ORTHO05D005426 4.4e-106 388.7 311 68.2
TAR636G3311 Trochodendron aralioides HOM05D004553 ORTHO05D005426 5.7e-106 388.3 300 75.3
Nitab4.5_0001839g0070 Nicotiana tabacum HOM05D004553 ORTHO05D005426 7.5e-106 387.9 309 68.3
Prupe.8G227700 Prunus persica HOM05D004553 ORTHO05D005426 7.5e-106 387.9 308 68.8
Cc03_g10870 Coffea canephora HOM05D004553 ORTHO05D005426 1.7e-105 386.7 309 71.8
Duzib138G1605 Durio zibethinus HOM05D004553 ORTHO05D005426 1.7e-105 386.7 300 73.3
Hund09587 Selenicereus undatus HOM05D004553 ORTHO05D005426 4.8e-105 385.2 306 73.2
Haze_24589 Corylus avellana HOM05D004553 ORTHO05D005426 6.3e-105 384.8 306 68.6
Haze_24593 Corylus avellana HOM05D004553 ORTHO05D005426 6.3e-105 384.8 306 68.6
MD10G1187900 Malus domestica HOM05D004553 ORTHO05D005426 8.2e-105 384.4 307 67.8
MD05G1201100 Malus domestica HOM05D004553 ORTHO05D005426 1.4e-104 383.6 308 68.2
PGSC0003DMG400026216 Solanum tuberosum HOM05D004553 ORTHO05D005426 1.8e-104 383.3 311 67.8
MSTRG.3646 Avicennia marina HOM05D004553 ORTHO05D005426 3.1e-104 382.5 310 70.6
Potri.002G041400 Populus trichocarpa HOM05D004553 ORTHO05D005426 5.3e-104 381.7 307 67.1
arahy.Tifrunner.gnm1.ann1.9FA7V6 Arachis hypogaea HOM05D004553 ORTHO05D005426 9.1e-104 380.9 307 72.6
ATR0794G102 Amborella trichopoda HOM05D004553 ORTHO05D005426 1.2e-103 380.6 310 71.9
Potri.005G221700 Populus trichocarpa HOM05D004553 ORTHO05D005426 1.2e-103 380.6 309 67.3
Ah.02g111810 Amaranthus hybridus HOM05D004553 ORTHO05D005426 1.6e-103 380.2 306 67.0
CsaV3_7G026990 Cucumis sativus L. HOM05D004553 ORTHO05D005426 2.0e-103 379.8 308 65.9
EL10Ac5g10427 Beta vulgaris HOM05D004553 ORTHO05D005426 5.9e-103 378.3 306 70.9
MELO3C012740.2 Cucumis melo HOM05D004553 ORTHO05D005426 5.9e-103 378.3 307 65.5
TPR.G5760 Trifolium pratense HOM05D004553 ORTHO05D005426 1.0e-102 377.5 304 68.1
Glyma.03G161100 Glycine max HOM05D004553 ORTHO05D005426 1.3e-102 377.1 300 73.0
Lj1A269G34 Lonicera japonica HOM05D004553 ORTHO05D005426 3.8e-102 375.6 304 71.7
arahy.Tifrunner.gnm1.ann1.1I5KFR Arachis hypogaea HOM05D004553 ORTHO05D005426 1.1e-101 374.0 307 73.6
arahy.Tifrunner.gnm1.ann1.6P10V3 Arachis hypogaea HOM05D004553 ORTHO05D005426 1.1e-101 374.0 307 73.6
Manes.05G087500 Manihot esculenta HOM05D004553 ORTHO05D005426 1.5e-101 373.6 308 70.1
Rhsim01G0266400 Rhododendron simsii HOM05D004553 ORTHO05D005426 1.5e-101 373.6 299 69.6
Peaxi162Scf00324g00032 Petunia axillaris HOM05D004553 ORTHO05D005426 1.9e-101 373.2 307 67.1
Sed0016387 Sechium edule HOM05D004553 ORTHO05D005426 1.9e-101 373.2 307 64.2
Medtr7g096510 Medicago truncatula HOM05D004553 ORTHO05D005426 2.5e-101 372.9 304 66.8
ClCG09G008080 Citrullus lanatus HOM05D004553 ORTHO05D005426 4.2e-101 372.1 308 64.3
TPR.G18834 Trifolium pratense HOM05D004553 ORTHO05D005426 4.2e-101 372.1 305 67.2
Oeu025823.1 Olea europaea HOM05D004553 ORTHO05D005426 5.5e-101 371.7 308 70.8
Sabra02G0033000 Salix brachista HOM05D004553 ORTHO05D005426 5.5e-101 371.7 302 71.5
Psat3g059120 Pisum sativum HOM05D004553 ORTHO05D005426 9.4e-101 370.9 304 71.1
Sed0015397 Sechium edule HOM05D004553 ORTHO05D005426 9.4e-101 370.9 308 64.6
DCAR_012530 Daucus carota HOM05D004553 ORTHO05D005426 1.6e-100 370.2 308 69.8
AT3G58180 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 2.7e-100 369.4 300 69.3
arahy.Tifrunner.gnm1.ann1.59X69N Arachis hypogaea HOM05D004553 ORTHO05D005426 2.7e-100 369.4 307 73.3
Carub.0005s2503 Capsella rubella HOM05D004553 ORTHO05D005426 2.7e-100 369.4 305 68.2
Phvul.001G159000 Phaseolus vulgaris HOM05D004553 ORTHO05D005426 2.7e-100 369.4 304 70.7
QL09p037745 Quercus lobata HOM05D004553 ORTHO05D005426 3.6e-100 369.0 307 70.4
SGA_v2.0_scaffold31G12652 Striga asiatica HOM05D004553 ORTHO05D005426 3.6e-100 369.0 319 64.9
TWI12G0019 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 8.0e-100 367.9 296 72.0
CiPaw.03G261300 Carya illinoinensis HOM05D004553 ORTHO05D005426 1.0e-99 367.5 300 72.0
CANSAT21G2336 Cannabis sativa HOM05D004553 ORTHO05D005426 1.8e-99 366.7 303 71.6
FvH4_2g22010 Fragaria vesca HOM05D004553 ORTHO05D005426 1.8e-99 366.7 307 70.7
RcHm_v2.0_Chr6g0288871 Rosa chinensis HOM05D004553 ORTHO05D005426 2.3e-99 366.3 307 70.7
COL.COLO4_05596 Corchorus olitorius HOM05D004553 ORTHO05D005426 3.0e-99 365.9 291 68.0
Os12g0626100 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 4.0e-99 365.5 308 64.3
Sp5g04540 Schrenkiella parvula HOM05D004553 ORTHO05D005426 4.0e-99 365.5 302 68.5
Aa31LG10G12900 Aethionema arabicum HOM05D004553 ORTHO05D005426 5.2e-99 365.2 307 68.4
Ca_02526_v3 Cicer arietinum L. HOM05D004553 ORTHO05D005426 5.2e-99 365.2 307 71.7
FAN20G1146 Fragaria x ananassa HOM05D004553 ORTHO05D005426 5.2e-99 365.2 307 70.0
Cpa.g.sc50.47 Carica papaya HOM05D004553 ORTHO05D005426 6.8e-99 364.8 303 70.3
BcaC07g40188 Brassica carinata HOM05D004553 ORTHO05D005426 8.8e-99 364.4 302 68.9
THA.LOC104802841 Tarenaya hassleriana HOM05D004553 ORTHO05D005426 1.5e-98 363.6 305 69.8
VMungo1383G1775 Vigna mungo HOM05D004553 ORTHO05D005426 5.7e-98 361.7 295 71.5
FAN15G2654 Fragaria x ananassa HOM05D004553 ORTHO05D005426 9.8e-98 360.9 314 69.4
FAN24G1077 Fragaria x ananassa HOM05D004553 ORTHO05D005426 2.2e-97 359.8 314 69.1
BcaC07g40268 Brassica carinata HOM05D004553 ORTHO05D005426 2.8e-97 359.4 302 68.5
DCAR_009311 Daucus carota HOM05D004553 ORTHO05D005426 4.8e-97 358.6 299 70.6
A09p50940 Brassica napus HOM05D004553 ORTHO05D005426 6.3e-97 358.2 303 68.3
BraA09t40540Z Brassica rapa HOM05D004553 ORTHO05D005426 6.3e-97 358.2 303 68.3
Lalb_Chr20g0107851 Lupinus albus HOM05D004553 ORTHO05D005426 6.3e-97 358.2 300 70.0
BolC8t50975H Brassica oleracea HOM05D004553 ORTHO05D005426 1.1e-96 357.5 303 68.6
Os12g0163300 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 1.1e-96 357.5 307 67.4
AL5G39880 Arabidopsis lyrata HOM05D004553 ORTHO05D005426 1.4e-96 357.1 305 67.2
BcaC08g44904 Brassica carinata HOM05D004553 ORTHO05D005426 1.4e-96 357.1 300 69.7
vmacro03822 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 1.4e-96 357.1 319 64.6
BcaB02g07544 Brassica carinata HOM05D004553 ORTHO05D005426 2.4e-96 356.3 302 69.2
Thhalv10006107m.g Eutrema salsugineum HOM05D004553 ORTHO05D005426 5.4e-96 355.1 300 68.0
FAN27G3448 Fragaria x ananassa HOM05D004553 ORTHO05D005426 7.0e-96 354.8 298 70.5
Psat0s2295g0120 Pisum sativum HOM05D004553 ORTHO05D005426 1.6e-95 353.6 300 69.7
BolC6t37683H Brassica oleracea HOM05D004553 ORTHO05D005426 3.5e-95 352.4 291 71.1
C08p33760 Brassica napus HOM05D004553 ORTHO05D005426 3.8e-94 349.0 303 68.0
Zm00001eb259150 Zea mays HOM05D004553 ORTHO05D005426 8.6e-94 347.8 310 62.3
BraA07t30048Z Brassica rapa HOM05D004553 ORTHO05D005426 9.5e-93 344.4 291 70.1
C06p25240 Brassica napus HOM05D004553 ORTHO05D005426 1.2e-92 344.0 291 70.4
unitig_8.g3887 Utricularia gibba HOM05D004553 ORTHO05D005426 3.6e-92 342.4 304 66.4
A07p23970 Brassica napus HOM05D004553 ORTHO05D005426 6.1e-92 341.7 293 69.6
SalBow6G2244 Salvia bowleyana HOM05D004553 ORTHO05D005426 2.2e-89 333.2 307 64.2
HPP92_007745 Vanilla planifolia HOM05D004553 ORTHO05D005426 1.4e-88 330.5 308 66.2
TWI18G0975 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 1.3e-86 323.9 291 62.9
vmacro02641 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 1.4e-83 313.9 304 63.2
vmacro06125 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 1.4e-83 313.9 317 59.0
Thecc.01G262600 Theobroma cacao HOM05D004553 ORTHO05D005426 4.6e-79 298.9 242 66.9
ECA247G2484 Erigeron canadensis HOM05D004553 ORTHO05D005426 5.6e-77 292.0 242 66.1
AagrBONN_evm.TU.Sc2ySwM_228.3863 Anthoceros agrestis HOM05D004553 ORTHO05D005426 1.2e-71 274.2 302 61.9
AagrBONN_evm.TU.Sc2ySwM_117.1472 Anthoceros agrestis HOM05D004553 ORTHO05D005426 2.7e-71 273.1 303 61.1
Sc05g0000780 Simmondsia chinensis HOM05D004553 ORTHO05D005426 2.7e-71 273.1 230 63.9
Pp3c11_17490 Physcomitrium patens HOM05D004553 ORTHO05D005426 1.3e-62 244.2 297 57.2
CARHR168560 Cardamine hirsuta HOM05D004553 ORTHO05D005426 2.9e-57 226.5 205 65.9
Mapoly0065s0014 Marchantia polymorpha HOM05D004553 ORTHO05D005426 3.2e-56 223.0 239 59.4
SMO304G0012 Selaginella moellendorffii HOM05D004553 ORTHO05D005426 9.2e-56 221.5 297 55.9
HPP92_007825 Vanilla planifolia HOM05D004553 ORTHO05D005426 3.1e-51 206.5 259 57.1
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 2.0e-50 203.8 201 59.2
CBR_g46193 Chara braunii HOM05D004553 ORTHO05D005426 2.2e-49 200.3 325 47.7
Cre10.g435550 Chlamydomonas reinhardtii HOM05D004553 ORTHO05D005426 2.2e-49 200.3 298 46.0
Glyma.19G162800 Glycine max HOM05D001448 ORTHO05D005781 6.4e-49 198.7 243 51.9
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 5.3e-43 179.1 311 46.9
CDE04G1470 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 5.4e-40 169.1 127 68.5
Psat0s2087g0120 Pisum sativum HOM05D004553 ORTHO05D005426 1.0e-38 164.9 128 68.0
MCO15G119 Micromonas commoda HOM05D004553 ORTHO05D005426 1.2e-34 151.4 320 36.9
Haze_27369 Corylus avellana HOM05D004553 ORTHO05D005426 4.5e-34 149.4 294 34.7
Nn1g02691 Nelumbo nucifera HOM05D004553 ORTHO05D005426 1.3e-33 147.9 308 39.9
SEGI_33857 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 1.3e-30 137.9 113 65.5
SEGI_01794 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 8.2e-28 128.6 90 73.3
AT3G62530 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 1.0e-25 121.7 151 43.7
CDE04G0333 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 2.2e-25 120.6 77 77.9
Psat0s2088g0080 Pisum sativum HOM05D004553 ORTHO05D005426 4.9e-25 119.4 94 67.0
Oeu058648.1 Olea europaea HOM05D004553 ORTHO05D005426 7.9e-23 112.1 128 49.2
CARHR168550 Cardamine hirsuta HOM05D004553 ORTHO05D005426 1.9e-21 107.5 64 81.2
Oeu044898.1 Olea europaea HOM05D004553 ORTHO05D005426 2.4e-19 100.5 210 38.1
SHI26037 Sapria himalayana HOM05D004553 ORTHO05D000023 6.5e-17 92.4 160 38.8
BcaC01g01031 Brassica carinata HOM05D004553 ORTHO05D005426 3.2e-16 90.1 168 41.1
C03p87400 Brassica napus HOM05D004553 ORTHO05D005426 3.2e-16 90.1 168 41.1
BolC3t21049H Brassica oleracea HOM05D004553 ORTHO05D005426 3.2e-16 90.1 168 41.1
CAN.G159.14 Capsicum annuum HOM05D004553 ORTHO05D005426 1.6e-15 87.8 91 56.0
AagrBONN_evm.TU.Sc2ySwM_228.2479 Anthoceros agrestis HOM05D004553 ORTHO05D005426 3.6e-15 86.7 84 57.1
Oeu016862.1 Olea europaea HOM05D004553 ORTHO05D005426 5.1e-14 82.8 84 56.0
CAN.G795.4 Capsicum annuum HOM05D004553 ORTHO05D005426 6.7e-14 82.4 71 64.8
FvH4_2g19410 Fragaria vesca HOM05D004553 ORTHO05D005426 1.8e-11 74.3 65 60.0
Nitab4.5_0002915g0080 Nicotiana tabacum HOM05D000693 ORTHO05D001102 2.9e-09 67.0 111 40.5
Oeu041828.1 Olea europaea HOM05D004553 ORTHO05D005426 1.9e-08 64.3 80 45.0
CAN.G907.20 Capsicum annuum HOM05D004553 ORTHO05D005426 1.2e-07 61.6 40 75.0
Nitab4.5_0002915g0090 Nicotiana tabacum HOM05D004553 ORTHO05D005426 3.0e-06 57.0 102 38.2


User provided reference genes

Program Settings