Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G5517 Papaver somniferum HOM05D003841 ORTHO05D004602 8.9e-111 403.7 212 100.0
PSO675G0068 Papaver somniferum HOM05D003841 ORTHO05D004602 2.2e-109 399.1 212 98.1
PSO675G5063 Papaver somniferum HOM05D003841 ORTHO05D004602 1.4e-47 193.7 214 52.8
PSO541G4862 Papaver somniferum HOM05D003841 ORTHO05D004602 2.6e-46 189.5 216 52.8
Nn1g06911 Nelumbo nucifera HOM05D003841 ORTHO05D004602 2.3e-34 149.8 222 43.2
TAR271G0006 Trochodendron aralioides HOM05D003841 ORTHO05D004602 8.8e-34 147.9 242 42.6
TAR271G0005 Trochodendron aralioides HOM05D003841 ORTHO05D004602 2.0e-33 146.7 242 43.8
TAR627G0073 Trochodendron aralioides HOM05D003841 ORTHO05D004602 3.3e-33 146.0 241 42.3
Dinv02831 Davidia involucrata HOM05D003841 ORTHO05D004602 5.7e-33 145.2 240 40.4
Lj1A861T58 Lonicera japonica HOM05D003841 ORTHO05D004602 2.2e-32 143.3 230 43.9
CSS0048456 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 3.7e-32 142.5 242 40.5
Dinv22328 Davidia involucrata HOM05D003841 ORTHO05D004602 1.6e-30 137.1 235 41.3
Aqoxy1G03844 Aquilegia oxysepala HOM05D003841 ORTHO05D004602 2.9e-29 132.9 243 41.2
QL08p014515 Quercus lobata HOM05D003841 ORTHO05D004602 4.2e-28 129.0 237 38.0
Nitab4.5_0000552g0100 Nicotiana tabacum HOM05D003841 ORTHO05D004602 7.2e-28 128.3 240 37.9
Lj8A163G39 Lonicera japonica HOM05D003841 ORTHO05D004602 1.2e-27 127.5 232 39.2
Peaxi162Scf01365g00027 Petunia axillaris HOM05D003841 ORTHO05D004602 3.6e-27 125.9 231 38.1
Hund23360 Selenicereus undatus HOM05D003841 ORTHO05D004602 4.7e-27 125.6 213 41.8
COL.COLO4_09535 Corchorus olitorius HOM05D003841 ORTHO05D004602 1.0e-26 124.4 225 38.7
Gohir.A11G281600 Gossypium hirsutum HOM05D003841 ORTHO05D004602 1.0e-26 124.4 219 40.6
SalBow7G4379 Salvia bowleyana HOM05D003841 ORTHO05D004602 1.8e-26 123.6 229 36.2
Gohir.D11G294200 Gossypium hirsutum HOM05D003841 ORTHO05D004602 6.8e-26 121.7 219 39.7
arahy.Tifrunner.gnm1.ann1.GYU1HX Arachis hypogaea HOM05D003841 ORTHO05D004602 1.2e-25 120.9 236 39.4
Duzib213G0276 Durio zibethinus HOM05D003841 ORTHO05D004602 1.2e-25 120.9 225 38.7
Thecc.07G059100 Theobroma cacao HOM05D003841 ORTHO05D004602 1.2e-25 120.9 227 38.3
DCAR_010006 Daucus carota HOM05D003841 ORTHO05D004602 1.5e-25 120.6 226 36.3
Gorai.007G317200 Gossypium raimondii HOM05D003841 ORTHO05D004602 1.5e-25 120.6 219 39.7
MBI18_g38396_MAGBIO Magnolia biondii HOM05D003841 ORTHO05D004602 2.0e-25 120.2 234 39.7
PGSC0003DMG400019273 Solanum tuberosum HOM05D003841 ORTHO05D000515 2.6e-25 119.8 232 37.9
DCAR_022502 Daucus carota HOM05D003841 ORTHO05D004602 5.7e-25 118.6 224 38.8
CiPaw.12G124700 Carya illinoinensis HOM05D003841 ORTHO05D004602 7.5e-25 118.2 225 39.1
Ciclev10008955m.g Citrus clementina HOM05D003841 ORTHO05D004602 1.3e-24 117.5 235 35.7
Glyma.13G284700 Glycine max HOM05D003841 ORTHO05D004602 1.7e-24 117.1 227 37.9
RhsimUnG0254800 Rhododendron simsii HOM05D003841 ORTHO05D004602 1.7e-24 117.1 242 37.6
Duzib170G0031 Durio zibethinus HOM05D003841 ORTHO05D004602 2.2e-24 116.7 225 36.0
Lalb_Chr22g0357311 Lupinus albus HOM05D003841 ORTHO05D004602 2.2e-24 116.7 223 38.1
arahy.Tifrunner.gnm1.ann1.SIF99T Arachis hypogaea HOM05D003841 ORTHO05D004602 4.8e-24 115.5 236 36.9
Manes.15G079400 Manihot esculenta HOM05D003841 ORTHO05D004602 4.8e-24 115.5 231 35.9
Nitab4.5_0003052g0050 Nicotiana tabacum HOM05D003841 ORTHO05D004602 4.8e-24 115.5 232 35.8
Actinidia35303 Actinidia chinensis HOM05D003841 ORTHO05D004602 6.3e-24 115.2 253 35.2
MSTRG.6876 Avicennia marina HOM05D003841 ORTHO05D004602 6.3e-24 115.2 223 39.0
Cc05_g12980 Coffea canephora HOM05D003841 ORTHO05D004602 6.3e-24 115.2 234 38.0
Ah.06g183230 Amaranthus hybridus HOM05D003841 ORTHO05D004602 8.3e-24 114.8 221 39.8
HanXRQChr11g0332121 Helianthus annuus HOM05D003841 ORTHO05D004602 3.1e-23 112.8 220 35.5
Sc03g0009430 Simmondsia chinensis HOM05D003841 ORTHO05D004602 4.1e-23 112.5 214 38.3
Migut.H01878 Erythranthe guttata HOM05D003841 ORTHO05D004602 7.0e-23 111.7 234 35.5
CDE05G3666 Ceratophyllum demersum HOM05D003841 ORTHO05D004602 1.2e-22 110.9 221 39.4
Oeu005438.1 Olea europaea HOM05D003841 ORTHO05D004602 1.2e-22 110.9 236 33.9
Sed0013156 Sechium edule HOM05D003841 ORTHO05D004602 1.2e-22 110.9 225 37.8
ClCG05G014990 Citrullus lanatus HOM05D003841 ORTHO05D004602 1.6e-22 110.5 228 34.6
Glyma.12G216500 Glycine max HOM05D003841 ORTHO05D004602 2.7e-22 109.8 228 36.4
SGA_v2.0_scaffold9G05000 Striga asiatica HOM05D003841 ORTHO05D004602 2.7e-22 109.8 226 35.8
vmacro09595 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 2.7e-22 109.8 187 39.0
Solyc07g063870.3 Solanum lycopersicum HOM05D003841 ORTHO05D004602 3.5e-22 109.4 236 35.2
HPP92_004148 Vanilla planifolia HOM05D003841 ORTHO05D004602 3.5e-22 109.4 220 37.3
Gohir.D13G147500 Gossypium hirsutum HOM05D003841 ORTHO05D004602 4.5e-22 109.0 223 35.4
Gohir.A13G142900 Gossypium hirsutum HOM05D003841 ORTHO05D004602 7.7e-22 108.2 223 36.8
Gorai.013G165300 Gossypium raimondii HOM05D003841 ORTHO05D004602 7.7e-22 108.2 223 35.0
TWI39G0875 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 7.7e-22 108.2 243 32.9
TAR623G1765 Trochodendron aralioides HOM05D003841 ORTHO05D004602 7.7e-22 108.2 228 37.7
CANSAT11G1059 Cannabis sativa HOM05D003841 ORTHO05D004602 1.0e-21 107.8 209 36.8
CSS0046033 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 1.3e-21 107.5 186 40.9
Sopen07g032000 Solanum pennellii HOM05D003841 ORTHO05D004602 1.7e-21 107.1 238 34.5
EL10Ac4g08014 Beta vulgaris HOM05D003841 ORTHO05D004602 2.9e-21 106.3 221 37.6
Zm00001eb413050 Zea mays HOM05D003841 ORTHO05D004602 3.8e-21 105.9 221 38.5
AUR62041149 Chenopodium quinoa HOM05D003841 ORTHO05D004602 8.5e-21 104.8 221 37.1
Glyma.06G262900 Glycine max HOM05D003841 ORTHO05D004602 1.1e-20 104.4 240 34.6
AUR62029272 Chenopodium quinoa HOM05D003841 ORTHO05D004602 1.5e-20 104.0 221 36.2
Lsat_1_v5_gn_7_107821 Lactuca sativa HOM05D003841 ORTHO05D004602 1.9e-20 103.6 220 37.7
Rhsim06G0190700 Rhododendron simsii HOM05D003841 ORTHO05D004602 1.9e-20 103.6 230 34.3
Cfa020471 Carpinus fangiana HOM05D003841 ORTHO05D004602 2.5e-20 103.2 222 33.3
HPP92_005894 Vanilla planifolia HOM05D003841 ORTHO05D004602 2.5e-20 103.2 221 35.7
Zm00001eb171810 Zea mays HOM05D003841 ORTHO05D004602 2.5e-20 103.2 220 36.8
Rhsim06G0189000 Rhododendron simsii HOM05D003841 ORTHO05D004602 3.2e-20 102.8 230 34.3
MELO3C018156.2 Cucumis melo HOM05D003841 ORTHO05D004602 7.2e-20 101.7 226 33.6
CsaV3_3G022650 Cucumis sativus L. HOM05D003841 ORTHO05D004602 7.2e-20 101.7 227 36.1
Oeu052335.1 Olea europaea HOM05D003841 ORTHO05D004602 7.2e-20 101.7 227 34.4
Phvul.011G146700 Phaseolus vulgaris HOM05D003841 ORTHO05D004602 7.2e-20 101.7 233 35.2
ATR0804G047 Amborella trichopoda HOM05D003841 ORTHO05D004602 9.4e-20 101.3 230 34.3
Lj3g0010893 Lotus japonicus HOM05D003841 ORTHO05D004602 9.4e-20 101.3 236 32.6
THA.LOC104799894 Tarenaya hassleriana HOM05D003841 ORTHO05D004602 2.7e-19 99.8 227 35.2
TWI38G0390 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 2.7e-19 99.8 254 31.5
Ca_18832_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 3.6e-19 99.4 229 36.7
Ca_30091_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 3.6e-19 99.4 229 36.7
MSTRG.14400 Avicennia marina HOM05D003841 ORTHO05D004602 8.0e-19 98.2 261 34.1
PSO339G6399 Papaver somniferum HOM05D003841 ORTHO05D004602 8.0e-19 98.2 205 36.6
Psat7g160280 Pisum sativum HOM05D003841 ORTHO05D004602 8.0e-19 98.2 219 35.2
Aa31LG3G10490 Aethionema arabicum HOM05D003841 ORTHO05D004602 1.0e-18 97.8 226 37.2
ECA236G3199 Erigeron canadensis HOM05D003841 ORTHO05D004602 1.4e-18 97.4 224 33.5
Medtr4g081550 Medicago truncatula HOM05D003841 ORTHO05D004602 1.4e-18 97.4 222 36.0
CDE05G3612 Ceratophyllum demersum HOM05D003841 ORTHO05D004602 4.0e-18 95.9 220 35.9
Os08g0179900 Oryza sativa ssp. japonica HOM05D003841 ORTHO05D004602 4.0e-18 95.9 218 35.3
Migut.M01831 Erythranthe guttata HOM05D003841 ORTHO05D004602 5.2e-18 95.5 208 34.1
PSO384G0968 Papaver somniferum HOM05D003841 ORTHO05D004602 5.2e-18 95.5 205 35.6
Sabra16G0281100 Salix brachista HOM05D003841 ORTHO05D004602 5.2e-18 95.5 248 34.7
vmacro11787 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 8.8e-18 94.7 259 32.8
Potri.001G410100 Populus trichocarpa HOM05D003841 ORTHO05D004602 2.0e-17 93.6 240 34.2
DCAR_008683 Daucus carota HOM05D003841 ORTHO05D004602 2.6e-17 93.2 213 35.7
Potri.011G130000 Populus trichocarpa HOM05D003841 ORTHO05D004602 2.6e-17 93.2 240 33.3
GSVIVG01014549001 Vitis vinifera HOM05D003841 ORTHO05D004602 2.6e-17 93.2 125 45.6
VMungo1127G0850 Vigna mungo HOM05D003841 ORTHO05D004602 3.4e-17 92.8 233 33.9
AL8G29910 Arabidopsis lyrata HOM05D003841 ORTHO05D004602 4.4e-17 92.4 222 34.2
Eucgr.F03390 Eucalyptus grandis HOM05D003841 ORTHO05D004602 7.5e-17 91.7 234 31.6
Lalb_Chr01g0006261 Lupinus albus HOM05D003841 ORTHO05D004602 7.5e-17 91.7 236 33.9
Haze_09572 Corylus avellana HOM05D003841 ORTHO05D004602 1.3e-16 90.9 248 29.4
Os03g0201000 Oryza sativa ssp. japonica HOM05D003841 ORTHO05D049799 1.3e-16 90.9 154 40.9
Hund02157 Selenicereus undatus HOM05D003841 ORTHO05D004602 1.3e-16 90.9 200 36.0
Glyma.12G139800 Glycine max HOM05D003841 ORTHO05D004602 1.7e-16 90.5 252 32.5
FvH4_3g21510 Fragaria vesca HOM05D003841 ORTHO05D004602 2.2e-16 90.1 228 34.2
FAN11G1553 Fragaria x ananassa HOM05D003841 ORTHO05D004602 2.2e-16 90.1 228 34.2
RcHm_v2.0_Chr5g0036951 Rosa chinensis HOM05D003841 ORTHO05D004602 2.2e-16 90.1 227 33.0
FAN16G3040 Fragaria x ananassa HOM05D003841 ORTHO05D004602 2.8e-16 89.7 228 34.6
FAN25G3758 Fragaria x ananassa HOM05D003841 ORTHO05D004602 2.8e-16 89.7 231 32.9
Lj3g0010292 Lotus japonicus HOM05D003841 ORTHO05D004602 2.8e-16 89.7 228 32.0
Prupe.4G197300 Prunus persica HOM05D003841 ORTHO05D004602 2.8e-16 89.7 227 32.2
FAN21G0547 Fragaria x ananassa HOM05D003841 ORTHO05D004602 6.3e-16 88.6 228 34.6
unitig_899.g15555 Utricularia gibba HOM05D003841 ORTHO05D004602 6.3e-16 88.6 225 32.9
TPR.G34029 Trifolium pratense HOM05D003841 ORTHO05D004602 8.3e-16 88.2 229 34.1
unitig_746.g26819 Utricularia gibba HOM05D003841 ORTHO05D004602 1.8e-15 87.0 225 32.9
Lsat_1_v5_gn_2_59361 Lactuca sativa HOM05D003841 ORTHO05D004602 5.4e-15 85.5 153 40.5
AT5G54540 Arabidopsis thaliana HOM05D003841 ORTHO05D004602 9.2e-15 84.7 222 33.3
BcaB08g35813 Brassica carinata HOM05D003841 ORTHO05D004602 1.6e-14 84.0 212 33.0
Actinidia05162 Actinidia chinensis HOM05D003841 ORTHO05D004602 2.0e-14 83.6 250 32.0
Carub.0008s1482 Capsella rubella HOM05D003841 ORTHO05D004602 3.5e-14 82.8 211 34.1
MD11G1230100 Malus domestica HOM05D003841 ORTHO05D004602 4.5e-14 82.4 226 31.0
Sp6g16510 Schrenkiella parvula HOM05D003841 ORTHO05D004602 1.0e-13 81.3 214 31.8
CARHR267820 Cardamine hirsuta HOM05D003841 ORTHO05D004602 1.3e-13 80.9 220 32.3
BcaB05g22143 Brassica carinata HOM05D003841 ORTHO05D004602 3.3e-12 76.3 214 30.4
BcaC04g20329 Brassica carinata HOM05D003841 ORTHO05D004602 3.3e-12 76.3 213 32.4
Thhalv10014255m.g Eutrema salsugineum HOM05D003841 ORTHO05D004602 3.3e-12 76.3 214 31.3
A02p10210 Brassica napus HOM05D003841 ORTHO05D004602 4.3e-12 75.9 220 32.3
Sed0016497 Sechium edule HOM05D003841 ORTHO05D004602 4.3e-12 75.9 115 38.3
C02p16910 Brassica napus HOM05D003841 ORTHO05D004602 5.6e-12 75.5 217 31.3
Oeu052339.1 Olea europaea HOM05D003841 ORTHO05D004602 5.6e-12 75.5 172 33.1
BraA10t43276Z Brassica rapa HOM05D003841 ORTHO05D004602 7.3e-12 75.1 217 30.9
A10p11770 Brassica napus HOM05D003841 ORTHO05D004602 9.5e-12 74.7 213 31.5
CAN.G64.40 Capsicum annuum HOM05D003841 ORTHO05D004602 1.2e-11 74.3 118 42.4
MD03G1215500 Malus domestica HOM05D003841 ORTHO05D004602 2.1e-11 73.6 224 29.5
C09p44880 Brassica napus HOM05D003841 ORTHO05D004602 6.1e-11 72.0 213 31.9
arahy.Tifrunner.gnm1.ann1.SKE74K Arachis hypogaea HOM05D003841 ORTHO05D004602 8.0e-11 71.6 232 31.0
arahy.Tifrunner.gnm1.ann1.SRRR95 Arachis hypogaea HOM05D003841 ORTHO05D004602 1.4e-10 70.9 236 30.9
Gorai.007G317300 Gossypium raimondii HOM05D003841 ORTHO05D004602 4.0e-10 69.3 132 39.4
Actinidia10692 Actinidia chinensis HOM05D003841 ORTHO05D004602 6.8e-10 68.6 138 36.2
ClCG10G006140 Citrullus lanatus HOM05D003841 ORTHO05D004602 6.8e-10 68.6 184 32.1
BolC9t57359H Brassica oleracea HOM05D003841 ORTHO05D004602 8.9e-10 68.2 228 29.8
SGA_v2.0_scaffold70G23570 Striga asiatica HOM05D003841 ORTHO05D004602 8.9e-10 68.2 206 29.6
Gohir.D11G294233 Gossypium hirsutum HOM05D003841 ORTHO05D004602 1.5e-09 67.4 136 39.0
MELO3C016604.2 Cucumis melo HOM05D003841 ORTHO05D004602 2.0e-09 67.0 266 26.7
Sed0013484 Sechium edule HOM05D003841 ORTHO05D004602 2.6e-09 66.6 248 26.2
BraA02t06092Z Brassica rapa HOM05D003841 ORTHO05D004602 3.4e-09 66.2 216 32.4
SEGI_39337 Sequoiadendron giganteum HOM05D002766 ORTHO05D002809 4.4e-09 65.9 235 30.2
Ah.04g165190 Amaranthus hybridus HOM05D003841 ORTHO05D004602 2.9e-08 63.2 41 70.7
SEGI_16254 Sequoiadendron giganteum HOM05D002766 ORTHO05D002809 2.9e-08 63.2 236 29.2
CAN.G1160.11 Capsicum annuum HOM05D003841 ORTHO05D004602 3.7e-08 62.8 185 29.2
arahy.Tifrunner.gnm1.ann1.C8D70D Arachis hypogaea HOM05D002766 ORTHO05D002809 8.3e-08 61.6 207 29.5
Gohir.A11G281650 Gossypium hirsutum HOM05D003841 ORTHO05D004602 1.1e-07 61.2 135 39.3
SEGI_27148 Sequoiadendron giganteum HOM05D002766 ORTHO05D002809 1.8e-07 60.5 194 30.4
Pp3c17_23830 Physcomitrium patens HOM05D039964 ORTHO05D002809 5.4e-07 58.9 264 25.8
Phvul.005G089400 Phaseolus vulgaris HOM05D003841 ORTHO05D004602 9.2e-07 58.2 69 43.5
Oeu052334.1 Olea europaea HOM05D003841 ORTHO05D004602 1.2e-06 57.8 212 28.3
Oeu052338.1 Olea europaea HOM05D003841 ORTHO05D004602 1.2e-06 57.8 216 30.1
HanXRQChr05g0142591 Helianthus annuus HOM05D002766 ORTHO05D002809 1.6e-06 57.4 223 24.7
ECA233G0134 Erigeron canadensis HOM05D002766 ORTHO05D002809 2.0e-06 57.0 218 27.5
MBI04_g09526_MAGBIO Magnolia biondii HOM05D002766 ORTHO05D002809 2.0e-06 57.0 231 28.6
THA.LOC104825057 Tarenaya hassleriana HOM05D002766 ORTHO05D002809 2.0e-06 57.0 235 27.2
Hma1.2p1_0432F.1_g151920 Hydrangea macrophylla HOM05D002766 ORTHO05D002809 2.7e-06 56.6 231 25.1
Mapoly0042s0124 Marchantia polymorpha HOM05D002766 ORTHO05D002809 2.7e-06 56.6 259 25.5
SMO367G1113 Selaginella moellendorffii HOM05D002766 ORTHO05D002809 2.7e-06 56.6 240 28.8
VMungo1027G0001 Vigna mungo HOM05D003841 ORTHO05D004602 4.6e-06 55.8 176 30.1
arahy.Tifrunner.gnm1.ann1.EL3WER Arachis hypogaea HOM05D002766 ORTHO05D002809 5.9e-06 55.5 209 29.2
FAN01G2484 Fragaria x ananassa HOM05D002766 ORTHO05D002809 5.9e-06 55.5 144 30.6
Os02g0657700 Oryza sativa ssp. japonica HOM05D002766 ORTHO05D002809 5.9e-06 55.5 218 25.7
Rhsim09G0190500 Rhododendron simsii HOM05D002766 ORTHO05D002809 5.9e-06 55.5 233 29.6
TWI14G0760 Tripterygium wilfordii HOM05D002766 ORTHO05D002809 5.9e-06 55.5 144 29.9
Sp2g24690 Schrenkiella parvula HOM05D002766 ORTHO05D002809 7.8e-06 55.1 213 25.4


User provided reference genes

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