Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G5416 Papaver somniferum HOM05D005513 ORTHO05D006848 2.4e-184 648.7 316 100.0
PSO675G7310 Papaver somniferum HOM05D005513 ORTHO05D006848 2.4e-176 622.1 316 97.2
Nn7g37504 Nelumbo nucifera HOM05D005513 ORTHO05D006848 1.4e-144 516.5 316 79.7
TAR362G0948 Trochodendron aralioides HOM05D005513 ORTHO05D006848 1.6e-143 513.1 316 79.4
Cfa015273 Carpinus fangiana HOM05D005513 ORTHO05D006848 1.0e-142 510.4 316 78.8
CSS0036954 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 1.7e-142 509.6 316 79.1
Duzib151G0764 Durio zibethinus HOM05D005513 ORTHO05D006848 1.5e-141 506.5 316 78.5
Atru.chr4.1482 Acer truncatum HOM05D005513 ORTHO05D006848 4.7e-140 501.5 316 77.5
CANSAT56G3287 Cannabis sativa HOM05D005513 ORTHO05D006848 6.1e-140 501.1 316 76.9
Thecc.04G162400 Theobroma cacao HOM05D005513 ORTHO05D006848 6.1e-140 501.1 316 79.1
Ciclev10021262m.g Citrus clementina HOM05D005513 ORTHO05D006848 1.0e-139 500.4 316 77.2
QL10p057731 Quercus lobata HOM05D005513 ORTHO05D006848 1.8e-139 499.6 315 78.1
Actinidia11441 Actinidia chinensis HOM05D005513 ORTHO05D006848 2.3e-139 499.2 328 76.5
GSVIVG01038190001 Vitis vinifera HOM05D005513 ORTHO05D006848 4.4e-138 495.0 316 77.2
Gohir.D10G121000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 5.7e-138 494.6 316 76.9
Gorai.011G132900 Gossypium raimondii HOM05D005513 ORTHO05D006848 5.7e-138 494.6 316 76.9
Cpa.g.sc343.3 Carica papaya HOM05D005513 ORTHO05D006848 3.7e-137 491.9 316 76.9
Gohir.A10G146000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 4.8e-137 491.5 316 76.3
CiPaw.01G170000 Carya illinoinensis HOM05D005513 ORTHO05D006848 6.3e-137 491.1 316 75.9
PGR042G2305 Punica granatum HOM05D005513 ORTHO05D006848 8.3e-137 490.7 318 76.4
Prupe.7G267200 Prunus persica HOM05D005513 ORTHO05D006848 1.1e-136 490.3 316 76.9
Sed0010820 Sechium edule HOM05D005513 ORTHO05D006848 1.4e-136 490.0 303 77.9
vmacro15699 Vaccinium macrocarpon HOM05D005513 ORTHO05D006848 3.1e-136 488.8 327 74.3
Manes.05G132000 Manihot esculenta HOM05D005513 ORTHO05D006848 9.1e-136 487.3 316 75.0
Nitab4.5_0001936g0090 Nicotiana tabacum HOM05D005513 ORTHO05D006848 1.2e-135 486.9 318 75.2
RcHm_v2.0_Chr2g0085091 Rosa chinensis HOM05D005513 ORTHO05D006848 1.6e-135 486.5 316 75.3
TWI38G0850 Tripterygium wilfordii HOM05D005513 ORTHO05D006848 1.6e-135 486.5 320 74.1
Atru.chr4.1511 Acer truncatum HOM05D005587 ORTHO05D007287 2.0e-135 486.1 307 77.5
Nitab4.5_0008882g0020 Nicotiana tabacum HOM05D005513 ORTHO05D006848 2.0e-135 486.1 318 74.8
PGSC0003DMG400004444 Solanum tuberosum HOM05D005513 ORTHO05D006848 6.5e-134 481.1 309 74.8
Eucgr.L00024 Eucalyptus grandis HOM05D005513 ORTHO05D006848 1.1e-133 480.3 318 76.1
CAN.G575.118 Capsicum annuum HOM05D005513 ORTHO05D006848 1.9e-133 479.6 320 75.6
FAN26G1480 Fragaria x ananassa HOM05D005513 ORTHO05D006848 1.9e-133 479.6 316 73.7
Peaxi162Scf00544g00118 Petunia axillaris HOM05D005513 ORTHO05D006848 3.2e-133 478.8 300 77.7
CSS0028849 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 5.5e-133 478.0 284 82.7
CAN.G2177.12 Capsicum annuum HOM05D005513 ORTHO05D006848 5.5e-133 478.0 320 75.3
Sopen12g019010 Solanum pennellii HOM05D005513 ORTHO05D006848 9.4e-133 477.2 318 73.9
FAN23G0174 Fragaria x ananassa HOM05D005513 ORTHO05D006848 1.2e-132 476.9 316 73.4
Medtr4g087590 Medicago truncatula HOM05D005513 ORTHO05D006848 1.2e-132 476.9 316 74.4
COL.COLO4_08197 Corchorus olitorius HOM05D005513 ORTHO05D006848 1.6e-132 476.5 323 74.0
QL10p057421 Quercus lobata HOM05D005513 ORTHO05D006848 2.1e-132 476.1 373 66.2
Atru.BG.100.p Acer truncatum HOM05D005513 ORTHO05D006848 2.7e-132 475.7 284 81.0
RhsimUnG0015400 Rhododendron simsii HOM05D005513 ORTHO05D006848 2.7e-132 475.7 350 69.7
FvH4_1g00490 Fragaria vesca HOM05D005513 ORTHO05D006848 6.1e-132 474.6 316 73.1
Glyma.07G206300 Glycine max HOM05D005513 ORTHO05D006848 6.1e-132 474.6 316 73.4
TPR.G23516 Trifolium pratense HOM05D005513 ORTHO05D006848 6.1e-132 474.6 300 77.7
Cc09_g04220 Coffea canephora HOM05D005513 ORTHO05D006848 1.0e-131 473.8 300 75.7
Phvul.003G059600 Phaseolus vulgaris HOM05D005513 ORTHO05D006848 1.0e-131 473.8 316 73.7
CAN.G1579.15 Capsicum annuum HOM05D005513 ORTHO05D006848 2.3e-131 472.6 318 74.8
Potri.019G099100 Populus trichocarpa HOM05D005513 ORTHO05D006848 4.0e-131 471.9 302 76.2
Ca_18624_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 5.2e-131 471.5 316 74.1
Glyma.02G138700 Glycine max HOM05D005513 ORTHO05D006848 6.8e-131 471.1 317 72.9
Lj4g0013603 Lotus japonicus HOM05D005513 ORTHO05D006848 6.8e-131 471.1 317 73.5
EL10Ac3g06111 Beta vulgaris HOM05D005513 ORTHO05D006848 1.2e-130 470.3 317 73.8
Sabra19G0110200 Salix brachista HOM05D005513 ORTHO05D006848 2.0e-130 469.5 302 75.5
Lalb_Chr16g0384361 Lupinus albus HOM05D005513 ORTHO05D006848 3.4e-130 468.8 317 73.2
Sed0015185 Sechium edule HOM05D005513 ORTHO05D006848 3.4e-130 468.8 303 73.9
AUR62002417 Chenopodium quinoa HOM05D005513 ORTHO05D006848 4.4e-130 468.4 311 74.3
VMungo0251G3259 Vigna mungo HOM05D005513 ORTHO05D006848 4.4e-130 468.4 316 73.1
arahy.Tifrunner.gnm1.ann1.GWB5D5 Arachis hypogaea HOM05D005513 ORTHO05D006848 5.7e-130 468.0 316 73.4
SalBow3G2273 Salvia bowleyana HOM05D005513 ORTHO05D006848 5.7e-130 468.0 300 76.0
Migut.F01838 Erythranthe guttata HOM05D005513 ORTHO05D006848 2.2e-129 466.1 300 76.0
HanXRQChr10g0285921 Helianthus annuus HOM05D005513 ORTHO05D006848 4.8e-129 464.9 317 73.5
Aqoxy2G04162 Aquilegia oxysepala HOM05D005513 ORTHO05D006848 1.1e-128 463.8 304 74.3
arahy.Tifrunner.gnm1.ann1.GC3WT6 Arachis hypogaea HOM05D005513 ORTHO05D006848 1.1e-128 463.8 316 72.5
FAN28G1408 Fragaria x ananassa HOM05D005513 ORTHO05D006848 1.1e-128 463.8 336 68.8
Rhsim02G0085900 Rhododendron simsii HOM05D005513 ORTHO05D006848 1.4e-128 463.4 368 66.3
Oeu057533.3 Olea europaea HOM05D005513 ORTHO05D006848 3.1e-128 462.2 346 67.3
AUR62023772 Chenopodium quinoa HOM05D005513 ORTHO05D006848 4.1e-128 461.8 311 73.6
MSTRG.8188 Avicennia marina HOM05D005513 ORTHO05D006848 5.4e-128 461.5 300 75.3
Peaxi162Scf00544g00117 Petunia axillaris HOM05D005513 ORTHO05D006848 1.2e-127 460.3 309 73.5
CAN.G575.103 Capsicum annuum HOM05D005513 ORTHO05D006848 2.7e-127 459.1 319 73.0
Psat7g119320 Pisum sativum HOM05D005513 ORTHO05D006848 2.3e-126 456.1 300 75.0
CsaV3_6G032350 Cucumis sativus L. HOM05D005513 ORTHO05D006848 2.9e-126 455.7 303 74.3
Hund12358 Selenicereus undatus HOM05D005513 ORTHO05D006848 1.5e-125 453.4 315 69.8
Lj6A199G41 Lonicera japonica HOM05D005513 ORTHO05D006848 4.2e-125 451.8 286 77.6
Eucgr.G01603 Eucalyptus grandis HOM05D005513 ORTHO05D006848 7.2e-125 451.1 318 73.9
Ca_18630_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 1.2e-124 450.3 300 74.3
Lsat_1_v5_gn_2_40261 Lactuca sativa HOM05D005513 ORTHO05D006848 1.2e-124 450.3 325 70.2
ATR0743G005 Amborella trichopoda HOM05D005513 ORTHO05D006848 1.6e-124 449.9 300 73.0
THA.LOC104801693 Tarenaya hassleriana HOM05D005513 ORTHO05D006848 1.6e-124 449.9 302 70.9
MD15G1148400 Malus domestica HOM05D005513 ORTHO05D006848 4.7e-124 448.4 284 77.1
BcaB05g21485 Brassica carinata HOM05D005513 ORTHO05D006848 2.0e-122 443.0 304 69.7
C02p04480 Brassica napus HOM05D005513 ORTHO05D006848 2.0e-122 443.0 304 69.7
CARHR202830 Cardamine hirsuta HOM05D005513 ORTHO05D006848 3.4e-122 442.2 302 70.2
BraA02t05034Z Brassica rapa HOM05D005513 ORTHO05D006848 7.5e-122 441.0 304 69.4
A02p00500 Brassica napus HOM05D005513 ORTHO05D006848 1.3e-121 440.3 304 69.7
Sp6g32980 Schrenkiella parvula HOM05D005513 ORTHO05D006848 1.3e-121 440.3 304 70.1
BolC2t06408H Brassica oleracea HOM05D005513 ORTHO05D006848 4.9e-121 438.3 304 69.1
Carub.0006s0894 Capsella rubella HOM05D005513 ORTHO05D006848 4.9e-121 438.3 302 68.9
CAN.G2107.3 Capsicum annuum HOM05D005513 ORTHO05D006848 1.8e-120 436.4 280 77.1
Thhalv10014198m.g Eutrema salsugineum HOM05D005513 ORTHO05D006848 1.8e-120 436.4 304 69.7
HPP92_011686 Vanilla planifolia HOM05D005513 ORTHO05D006848 3.2e-120 435.6 296 72.0
MELO3C011447.2 Cucumis melo HOM05D005513 ORTHO05D006848 4.1e-120 435.3 346 65.3
HPP92_011691 Vanilla planifolia HOM05D005513 ORTHO05D006848 4.1e-120 435.3 296 72.0
Os08g0542600 Oryza sativa ssp. japonica HOM05D005513 ORTHO05D006848 1.2e-119 433.7 300 69.7
Zm00001eb037350 Zea mays HOM05D005513 ORTHO05D006848 1.6e-119 433.3 307 68.4
Aa31LG3G16700 Aethionema arabicum HOM05D005513 ORTHO05D006848 1.7e-118 429.9 302 69.9
AL6G20970 Arabidopsis lyrata HOM05D005513 ORTHO05D006848 2.9e-118 429.1 302 68.9
AT5G10460 Arabidopsis thaliana HOM05D005513 ORTHO05D006848 9.5e-117 424.1 302 68.2
ECA238G0802 Erigeron canadensis HOM05D005513 ORTHO05D006848 9.5e-117 424.1 284 72.5
BcaC03g13313 Brassica carinata HOM05D005513 ORTHO05D006848 1.2e-116 423.7 304 67.8
ClCG08G010170 Citrullus lanatus HOM05D005513 ORTHO05D006848 5.2e-115 418.3 308 68.5
Dinv33223 Davidia involucrata HOM05D005513 ORTHO05D006848 2.6e-114 416.0 251 81.3
SEGI_26385 Sequoiadendron giganteum HOM05D005513 ORTHO05D006848 5.0e-110 401.7 301 63.1
Solyc12g038820.1 Solanum lycopersicum HOM05D005513 ORTHO05D006848 5.6e-109 398.3 251 76.5
Nitab4.5_0002604g0050 Nicotiana tabacum HOM05D005513 ORTHO05D006848 1.8e-107 393.3 293 67.9
Sc19g0006410 Simmondsia chinensis HOM05D005513 ORTHO05D006848 6.4e-105 384.8 251 73.7
SGA_v2.0_scaffold122G33215 Striga asiatica HOM05D005513 ORTHO05D006848 1.1e-104 384.0 347 59.1
CAN.G575.78 Capsicum annuum HOM05D005513 ORTHO05D006848 7.8e-103 377.9 251 73.7
CAN.G2075.11 Capsicum annuum HOM05D005513 ORTHO05D006848 2.3e-102 376.3 319 63.3
Nitab4.5_0000241g0250 Nicotiana tabacum HOM05D005513 ORTHO05D006848 5.2e-99 365.2 264 68.9
SMO119G0305 Selaginella moellendorffii HOM05D005513 ORTHO05D006848 2.3e-94 349.7 296 58.4
DCAR_005450 Daucus carota HOM05D005513 ORTHO05D006848 1.1e-93 347.4 228 75.4
Haze_01354 Corylus avellana HOM05D005513 ORTHO05D006848 3.6e-92 342.4 317 58.4
Lj6A58T47 Lonicera japonica HOM05D005513 ORTHO05D006848 4.2e-88 328.9 222 74.8
CAN.G2075.13 Capsicum annuum HOM05D005513 ORTHO05D006848 3.6e-84 315.8 226 71.7
Medtr4g087600 Medicago truncatula HOM05D005513 ORTHO05D006848 7.6e-74 281.6 209 67.9
MCO04G248 Micromonas commoda HOM05D005513 ORTHO05D006848 6.0e-71 271.9 332 45.8
CAN.G181.20 Capsicum annuum HOM05D005513 ORTHO05D006848 5.1e-70 268.9 192 69.8
AUR62021707 Chenopodium quinoa HOM05D005513 ORTHO05D006848 4.8e-68 262.3 187 69.5
PRCOL_00005454 Prasinoderma coloniale HOM05D005513 ORTHO05D006848 1.4e-59 234.2 321 43.0
Lj6A193T36 Lonicera japonica HOM05D005513 ORTHO05D006848 6.9e-59 231.9 178 70.2
Gorai.004G148900 Gossypium raimondii HOM05D005513 ORTHO05D006848 1.2e-55 221.1 165 67.9
CAN.G1703.16 Capsicum annuum HOM05D005513 ORTHO05D006848 1.9e-53 213.8 142 75.4
CAN.G1565.3 Capsicum annuum HOM05D005513 ORTHO05D006848 8.2e-52 208.4 320 41.6
Cre14.g609300 Chlamydomonas reinhardtii HOM05D005513 ORTHO05D006848 1.9e-48 197.2 317 39.1
SHI25989 Sapria himalayana HOM05D000105 ORTHO05D000023 1.8e-46 190.7 173 57.8
Lj6A58T48 Lonicera japonica HOM05D005513 ORTHO05D006848 3.2e-40 169.9 112 75.0
Lj6A203T27 Lonicera japonica HOM05D005513 ORTHO05D006848 1.1e-37 161.4 100 77.0
Cc00_g04390 Coffea canephora HOM05D005513 ORTHO05D006848 4.8e-36 156.0 114 64.0
Lj6A203G20 Lonicera japonica HOM05D005513 ORTHO05D006848 2.4e-27 127.1 176 43.8
CAN.G1703.15 Capsicum annuum HOM05D005513 ORTHO05D006848 4.1e-27 126.3 92 69.6
CAN.G12630.1 Capsicum annuum HOM05D005513 ORTHO05D006848 9.4e-24 115.2 80 73.8
Lj6C203G2 Lonicera japonica HOM05D005513 ORTHO05D006848 6.1e-23 112.5 77 72.7
EL10Ac7g16782 Beta vulgaris HOM05D005513 ORTHO05D006848 1.2e-21 108.2 67 74.6
RcHm_v2.0_Chr2g0085051 Rosa chinensis HOM05D005513 ORTHO05D343180 4.8e-20 102.8 86 60.5
Lj6A192T18 Lonicera japonica HOM05D005513 ORTHO05D006848 4.7e-15 86.3 56 71.4
Lj6A230T44 Lonicera japonica HOM05D005513 ORTHO05D006848 5.2e-14 82.8 53 77.4
SHI25988 Sapria himalayana HOM05D000105 ORTHO05D000023 9.8e-13 78.6 45 75.6


User provided reference genes

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