Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G5103 Papaver somniferum HOM05D004702 ORTHO05D005505 2.7e-272 941.4 479 100.0
PSO675G4695 Papaver somniferum HOM05D004702 ORTHO05D005505 1.3e-255 885.9 484 94.0
TAR381G0178 Trochodendron aralioides HOM05D004702 ORTHO05D005505 5.8e-118 428.7 492 52.2
Manes.05G176200 Manihot esculenta HOM05D004702 ORTHO05D005505 1.3e-117 427.6 486 52.9
CANSAT25G0849 Cannabis sativa HOM05D004702 ORTHO05D005505 3.2e-116 422.9 463 52.5
TAR376G0323 Trochodendron aralioides HOM05D004702 ORTHO05D005505 2.1e-115 420.2 469 53.7
Manes.18G040500 Manihot esculenta HOM05D004702 ORTHO05D005505 4.6e-115 419.1 483 52.2
Thecc.08G002800 Theobroma cacao HOM05D004702 ORTHO05D005505 7.9e-115 418.3 483 51.3
Ciclev10001048m.g Citrus clementina HOM05D004702 ORTHO05D005505 8.7e-114 414.8 479 51.4
Duzib041G0633 Durio zibethinus HOM05D004702 ORTHO05D005505 1.9e-113 413.7 478 52.5
Dinv35933 Davidia involucrata HOM05D004702 ORTHO05D005505 2.5e-113 413.3 450 54.4
COL.COLO4_03654 Corchorus olitorius HOM05D004702 ORTHO05D005505 9.6e-113 411.4 458 53.5
Duzib093G1440 Durio zibethinus HOM05D004702 ORTHO05D005505 4.8e-112 409.1 484 50.4
TAR625G0654 Trochodendron aralioides HOM05D004702 ORTHO05D005505 6.3e-112 408.7 424 55.4
TWI56G0769 Tripterygium wilfordii HOM05D004702 ORTHO05D005505 8.2e-112 408.3 446 52.2
Sabra14G0017000 Salix brachista HOM05D004702 ORTHO05D005505 2.4e-111 406.8 426 54.5
Gohir.D05G207800 Gossypium hirsutum HOM05D004702 ORTHO05D005505 9.0e-111 404.8 487 50.9
Gohir.A05G204600 Gossypium hirsutum HOM05D004702 ORTHO05D005505 1.5e-110 404.1 487 50.9
RcHm_v2.0_Chr6g0308391 Rosa chinensis HOM05D004702 ORTHO05D005505 1.5e-110 404.1 482 49.6
Gorai.009G214400 Gossypium raimondii HOM05D004702 ORTHO05D005505 2.6e-110 403.3 487 50.7
Potri.014G025000 Populus trichocarpa HOM05D004702 ORTHO05D005505 2.6e-110 403.3 441 52.4
Potri.002G123800 Populus trichocarpa HOM05D004702 ORTHO05D005505 7.6e-110 401.7 463 51.0
Actinidia22651 Actinidia chinensis HOM05D004702 ORTHO05D005505 8.4e-109 398.3 483 50.7
Eucgr.F00191 Eucalyptus grandis HOM05D004702 ORTHO05D005505 1.4e-108 397.5 458 50.9
Sabra02G0097200 Salix brachista HOM05D004702 ORTHO05D005505 3.2e-108 396.4 466 50.2
Prupe.1G431800 Prunus persica HOM05D004702 ORTHO05D005505 7.2e-108 395.2 476 51.7
Cc10_g04740 Coffea canephora HOM05D004702 ORTHO05D005505 1.2e-107 394.4 480 48.8
CSS0001222 Camellia sinensis var. sinensis HOM05D004702 ORTHO05D005505 1.0e-106 391.3 450 52.0
CAN.G1030.31 Capsicum annuum HOM05D004702 ORTHO05D005505 3.0e-106 389.8 465 52.7
Actinidia01089 Actinidia chinensis HOM05D004702 ORTHO05D005505 3.9e-106 389.4 434 53.0
FAN15G1938 Fragaria x ananassa HOM05D004702 ORTHO05D005505 3.9e-106 389.4 442 50.0
DCAR_012789 Daucus carota HOM05D004702 ORTHO05D005505 5.1e-106 389.0 436 51.1
Lsat_1_v5_gn_1_22040 Lactuca sativa HOM05D004702 ORTHO05D005505 8.7e-106 388.3 481 49.3
Dinv39282 Davidia involucrata HOM05D004702 ORTHO05D005505 4.3e-105 386.0 455 51.0
Nitab4.5_0000287g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 9.7e-105 384.8 442 52.0
Cpa.g.sc21.167 Carica papaya HOM05D004702 ORTHO05D005505 1.3e-104 384.4 489 49.7
FAN24G1074 Fragaria x ananassa HOM05D004702 ORTHO05D005505 2.8e-104 383.3 482 47.1
QL02p004185 Quercus lobata HOM05D004702 ORTHO05D005505 2.8e-104 383.3 482 48.3
FvH4_2g33990 Fragaria vesca HOM05D004702 ORTHO05D005505 4.8e-104 382.5 482 46.9
MD15G1078600 Malus domestica HOM05D004702 ORTHO05D005505 6.3e-104 382.1 440 50.9
Aqoxy6G01249 Aquilegia oxysepala HOM05D004702 ORTHO05D005505 2.4e-103 380.2 463 47.7
Gohir.A06G020700 Gossypium hirsutum HOM05D004702 ORTHO05D005505 2.4e-103 380.2 432 51.2
FAN27G2110 Fragaria x ananassa HOM05D004702 ORTHO05D005505 5.3e-103 379.0 483 47.0
Gohir.D06G019009 Gossypium hirsutum HOM05D004702 ORTHO05D005505 5.3e-103 379.0 432 50.7
Nitab4.5_0005129g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 6.9e-103 378.6 484 48.3
Gorai.010G022200 Gossypium raimondii HOM05D004702 ORTHO05D005505 9.0e-103 378.3 436 50.5
Hma1.2p1_0360F.1_g135770 Hydrangea macrophylla HOM05D004702 ORTHO05D005505 3.4e-102 376.3 472 47.9
FAN20G1472 Fragaria x ananassa HOM05D004702 ORTHO05D005505 1.0e-101 374.8 483 46.8
Nn5g30368 Nelumbo nucifera HOM05D004702 ORTHO05D005505 1.0e-101 374.8 450 51.6
Oeu009775.1 Olea europaea HOM05D004702 ORTHO05D005505 5.0e-101 372.5 486 47.9
MD08G1095800 Malus domestica HOM05D004702 ORTHO05D005505 6.5e-101 372.1 481 48.2
VMungo1309G0408 Vigna mungo HOM05D004702 ORTHO05D005505 1.4e-100 370.9 453 48.6
arahy.Tifrunner.gnm1.ann1.WJS3XD Arachis hypogaea HOM05D004702 ORTHO05D005505 4.2e-100 369.4 464 45.9
Oeu054792.1 Olea europaea HOM05D004702 ORTHO05D005505 1.6e-99 367.5 483 47.0
CsaV3_4G034620 Cucumis sativus L. HOM05D004702 ORTHO05D005505 6.1e-99 365.5 491 48.7
arahy.Tifrunner.gnm1.ann1.L8L5ZS Arachis hypogaea HOM05D004702 ORTHO05D005505 1.4e-98 364.4 458 45.9
Phvul.009G067000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 1.4e-98 364.4 492 45.7
Atru.BG.237.p Acer truncatum HOM05D004702 ORTHO05D005505 3.0e-98 363.2 388 52.1
MBI16_g04313_MAGBIO Magnolia biondii HOM05D004702 ORTHO05D005505 1.1e-97 361.3 502 48.6
ClCG05G020100 Citrullus lanatus HOM05D004702 ORTHO05D005505 2.0e-97 360.5 447 50.1
Lj1g0008884 Lotus japonicus HOM05D004702 ORTHO05D005505 2.0e-97 360.5 436 47.2
TPR.G24175 Trifolium pratense HOM05D004702 ORTHO05D005505 4.3e-97 359.4 504 44.6
Glyma.06G042300 Glycine max HOM05D004702 ORTHO05D005505 9.7e-97 358.2 457 47.9
MELO3C016778.2 Cucumis melo HOM05D004702 ORTHO05D005505 1.3e-96 357.8 447 50.3
CiPaw.15G053800 Carya illinoinensis HOM05D004702 ORTHO05D005505 1.7e-96 357.5 481 48.0
Lj4C62G3 Lonicera japonica HOM05D004702 ORTHO05D005505 1.7e-96 357.5 444 48.0
Glyma.17G239800 Glycine max HOM05D004702 ORTHO05D005505 2.2e-96 357.1 491 45.0
DCAR_019426 Daucus carota HOM05D004702 ORTHO05D005505 2.8e-96 356.7 477 47.0
Medtr3g102120 Medicago truncatula HOM05D004702 ORTHO05D005505 3.7e-96 356.3 480 44.6
vmacro21496 Vaccinium macrocarpon HOM05D004702 ORTHO05D005505 9.1e-95 351.7 493 44.4
VMungo0647G1506 Vigna mungo HOM05D004702 ORTHO05D005505 3.4e-94 349.7 488 44.9
PGR083G2110 Punica granatum HOM05D004702 ORTHO05D005505 5.9e-94 349.0 469 47.3
ECA247G0009 Erigeron canadensis HOM05D004702 ORTHO05D005505 1.7e-93 347.4 483 45.8
HanXRQChr09g0267191 Helianthus annuus HOM05D004702 ORTHO05D005505 2.9e-93 346.7 410 48.5
Haze_18055 Corylus avellana HOM05D004702 ORTHO05D005505 8.5e-93 345.1 471 46.1
Cfa009956 Carpinus fangiana HOM05D004702 ORTHO05D005505 4.2e-92 342.8 435 46.7
Medtr1g019040 Medicago truncatula HOM05D004702 ORTHO05D005505 4.2e-92 342.8 479 43.6
Haze_18053 Corylus avellana HOM05D004702 ORTHO05D005505 5.5e-92 342.4 471 45.6
PGSC0003DMG400008008 Solanum tuberosum HOM05D004702 ORTHO05D005505 1.2e-91 341.3 456 46.9
Psat0s3591g0040 Pisum sativum HOM05D004702 ORTHO05D005505 1.6e-91 340.9 495 43.8
ECA232G1346 Erigeron canadensis HOM05D004702 ORTHO05D005505 4.7e-91 339.3 412 49.8
HanXRQChr04g0103941 Helianthus annuus HOM05D004702 ORTHO05D005505 7.9e-91 338.6 435 47.8
HanXRQChr10g0286851 Helianthus annuus HOM05D004702 ORTHO05D005505 7.9e-91 338.6 472 44.9
Solyc04g078630.3 Solanum lycopersicum HOM05D004702 ORTHO05D005505 2.3e-90 337.0 458 47.8
MSTRG.1063 Avicennia marina HOM05D004702 ORTHO05D005505 6.7e-90 335.5 473 45.0
TPR.G3800 Trifolium pratense HOM05D004702 ORTHO05D005505 4.4e-89 332.8 421 46.3
Ca_15936_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 7.4e-89 332.0 445 46.3
AUR62035465 Chenopodium quinoa HOM05D004702 ORTHO05D005505 2.8e-88 330.1 482 43.8
SalBow7G0327 Salvia bowleyana HOM05D004702 ORTHO05D005505 3.7e-88 329.7 475 42.5
Lalb_Chr14g0368541 Lupinus albus HOM05D004702 ORTHO05D005505 2.0e-86 323.9 368 49.2
Sc02g0007400 Simmondsia chinensis HOM05D004702 ORTHO05D005505 5.9e-86 322.4 473 44.2
Sopen04g032210 Solanum pennellii HOM05D004702 ORTHO05D005505 1.3e-85 321.2 392 50.8
Peaxi162Scf00882g00017 Petunia axillaris HOM05D004702 ORTHO05D005505 6.5e-85 318.9 481 45.7
HanXRQChr16g0509011 Helianthus annuus HOM05D004702 ORTHO05D005505 1.9e-84 317.4 406 45.3
Rhsim06G0053300 Rhododendron simsii HOM05D004702 ORTHO05D005505 7.2e-84 315.5 398 48.2
Glyma.14G085000 Glycine max HOM05D004702 ORTHO05D005505 1.8e-82 310.8 358 49.2
Ah.05g167300 Amaranthus hybridus HOM05D004702 ORTHO05D005505 4.0e-82 309.7 396 47.0
Phvul.001G024000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 1.3e-80 304.7 360 49.7
Hund05336 Selenicereus undatus HOM05D004702 ORTHO05D005505 1.3e-80 304.7 468 42.3
THA.LOC104801428 Tarenaya hassleriana HOM05D004702 ORTHO05D005505 2.4e-79 300.4 521 39.3
EL10As7g23762 Beta vulgaris HOM05D004702 ORTHO05D005505 7.0e-79 298.9 383 48.3
Sed0014061 Sechium edule HOM05D004702 ORTHO05D005505 7.0e-79 298.9 468 43.2
Aa31LG3G14060 Aethionema arabicum HOM05D004702 ORTHO05D005505 7.7e-78 295.4 496 41.3
AL6G41200 Arabidopsis lyrata HOM05D004702 ORTHO05D005505 6.5e-77 292.4 504 40.5
Lj5g0017670 Lotus japonicus HOM05D004702 ORTHO05D005505 1.6e-75 287.7 397 44.3
Migut.C00543 Erythranthe guttata HOM05D004702 ORTHO05D005505 6.1e-75 285.8 500 39.8
Carub.0006s2627 Capsella rubella HOM05D004702 ORTHO05D005505 1.0e-74 285.0 500 41.4
Thhalv10028638m.g Eutrema salsugineum HOM05D004702 ORTHO05D005505 1.1e-71 275.0 501 38.5
BcaB01g01331 Brassica carinata HOM05D004702 ORTHO05D005505 3.1e-71 273.5 502 39.0
A10p08810 Brassica napus HOM05D004702 ORTHO05D005505 2.0e-70 270.8 507 38.9
BraSC37t46123Z Brassica rapa HOM05D004702 ORTHO05D005505 4.5e-70 269.6 507 38.9
Haze_18006 Corylus avellana HOM05D004702 ORTHO05D005505 1.0e-69 268.5 405 41.7
SGA_v2.0_scaffold14G06974 Striga asiatica HOM05D004702 ORTHO05D005505 2.2e-69 267.3 457 37.9
Ah.11g043030 Amaranthus hybridus HOM05D004702 ORTHO05D005505 1.6e-67 261.2 442 39.6
CDE01G0679 Ceratophyllum demersum HOM05D004702 ORTHO05D005505 2.3e-66 257.3 476 36.3
Migut.N02734 Erythranthe guttata HOM05D004702 ORTHO05D005505 2.6e-65 253.8 358 40.5
C09p38410 Brassica napus HOM05D004702 ORTHO05D005505 5.7e-65 252.7 504 36.9
Ca_13276_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 9.8e-65 251.9 303 48.2
SalBow6G2833 Salvia bowleyana HOM05D004702 ORTHO05D005505 2.8e-64 250.4 440 39.5
unitig_8.g5031 Utricularia gibba HOM05D004702 ORTHO05D005505 2.8e-64 250.4 429 40.3
SGA_v2.0_scaffold197G41020 Striga asiatica HOM05D004702 ORTHO05D005505 4.9e-64 249.6 462 35.5
SalBow6G7027 Salvia bowleyana HOM05D004702 ORTHO05D005505 2.4e-63 247.3 440 39.1
Zm00001eb247120 Zea mays HOM05D004702 ORTHO05D005505 1.0e-61 241.9 510 33.1
HPP92_017369 Vanilla planifolia HOM05D004702 ORTHO05D005505 1.0e-58 231.9 510 33.9
GSVIVG01009450001 Vitis vinifera HOM05D004702 ORTHO05D005505 2.3e-58 230.7 191 59.2
Lalb_Chr23g0267231 Lupinus albus HOM05D004702 ORTHO05D005505 2.0e-57 227.6 203 55.7
ATR0762G037 Amborella trichopoda HOM05D004702 ORTHO05D005505 3.4e-57 226.9 441 34.9
Atru.chr13.733 Acer truncatum HOM05D004702 ORTHO05D005505 1.4e-55 221.5 194 58.8
SEGI_05734 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 3.5e-54 216.9 501 32.5
SEGI_19446 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.9e-52 211.1 503 32.8
SEGI_36308 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 5.8e-49 199.5 512 32.8
Lsat_1_v5_gn_4_127260 Lactuca sativa HOM05D004702 ORTHO05D005505 7.0e-47 192.6 170 55.9
SEGI_12847 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 7.0e-47 192.6 448 34.6
HPP92_010365 Vanilla planifolia HOM05D004702 ORTHO05D005505 9.2e-47 192.2 430 33.7
Psat0s3398g0240 Pisum sativum HOM05D004702 ORTHO05D005505 2.0e-46 191.0 162 58.0
SEGI_03871 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 2.5e-44 184.1 506 32.8
AagrBONN_evm.TU.Sc2ySwM_228.394 Anthoceros agrestis HOM05D004702 ORTHO05D005505 4.3e-44 183.3 416 32.0
Pp3c15_17100 Physcomitrium patens HOM05D004702 ORTHO05D005505 3.4e-41 173.7 477 32.1
AT4G06534 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 1.6e-35 154.8 342 35.7
Sp6g10680 Schrenkiella parvula HOM05D004702 ORTHO05D005505 1.6e-35 154.8 166 48.2
AUR62044709 Chenopodium quinoa HOM05D004702 ORTHO05D005505 2.8e-35 154.1 318 38.7
CARHR264230 Cardamine hirsuta HOM05D004702 ORTHO05D005505 3.6e-35 153.7 160 50.0
AUR62044714 Chenopodium quinoa HOM05D004702 ORTHO05D005505 3.1e-34 150.6 306 38.9
AT4G06536 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 2.6e-33 147.5 162 47.5
arahy.Tifrunner.gnm1.ann1.7E6QIB Arachis hypogaea HOM05D004702 ORTHO05D005505 5.8e-33 146.4 105 61.9
arahy.Tifrunner.gnm1.ann1.7V26PZ Arachis hypogaea HOM05D004702 ORTHO05D005505 5.8e-33 146.4 105 61.9
SMO145G0126 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 7.6e-33 146.0 456 30.0
Psat0s3398g0080 Pisum sativum HOM05D004702 ORTHO05D005505 1.1e-31 142.1 107 61.7
SMO112G0032 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 3.5e-30 137.1 330 31.8
Sp6g10670 Schrenkiella parvula HOM05D004702 ORTHO05D005505 5.1e-29 133.3 333 34.5
Os02g0614700 Oryza sativa ssp. japonica HOM05D004702 ORTHO05D005505 1.6e-27 128.3 159 39.6
Nn7g37290 Nelumbo nucifera HOM05D004702 ORTHO05D005505 1.1e-26 125.6 139 45.3
Glyma.15G095100 Glycine max HOM05D004702 ORTHO05D005505 2.8e-19 100.9 110 50.9
CBR_g733 Chara braunii HOM05D004702 ORTHO05D005505 6.2e-19 99.8 227 32.6
SMO364G0277 Selaginella moellendorffii HOM05D051657 ORTHO05D005505 1.3e-11 75.5 130 36.9
SEGI_40713 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 7.6e-09 66.2 122 32.8


User provided reference genes

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