Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G5087 Papaver somniferum HOM05D004453 ORTHO05D005375 1.8e-111 406.0 208 100.0
PSO675G3694 Papaver somniferum HOM05D004453 ORTHO05D005375 8.7e-111 403.7 208 99.0
Aqoxy1G00087 Aquilegia oxysepala HOM05D004453 ORTHO05D005375 8.0e-64 247.7 217 64.1
Cpa.g.sc119.21 Carica papaya HOM05D004453 ORTHO05D005375 2.3e-63 246.1 206 64.1
Dinv03791 Davidia involucrata HOM05D004453 ORTHO05D005375 6.8e-63 244.6 209 63.2
Dinv13490 Davidia involucrata HOM05D004453 ORTHO05D005375 8.9e-63 244.2 209 63.6
TWI34G0101 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 1.5e-62 243.4 198 66.2
TAR623G1190 Trochodendron aralioides HOM05D004453 ORTHO05D005375 2.0e-62 243.0 199 65.8
Lj4g0023466 Lotus japonicus HOM05D004453 ORTHO05D005375 4.4e-62 241.9 203 65.0
CARHR045220 Cardamine hirsuta HOM05D004453 ORTHO05D005375 1.3e-61 240.4 216 61.1
Glyma.20G024900 Glycine max HOM05D004453 ORTHO05D005375 1.3e-61 240.4 202 63.9
MBI19_g09317_MAGBIO Magnolia biondii HOM05D004453 ORTHO05D005375 1.3e-61 240.4 201 62.2
TWI60G0130 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 1.3e-61 240.4 216 62.0
PSO339G2035 Papaver somniferum HOM05D004453 ORTHO05D005375 1.7e-61 240.0 212 62.7
Nn7g35809 Nelumbo nucifera HOM05D004453 ORTHO05D005375 2.2e-61 239.6 217 59.9
PSO384G0395 Papaver somniferum HOM05D004453 ORTHO05D005375 2.2e-61 239.6 212 62.7
TPR.G34071 Trifolium pratense HOM05D004453 ORTHO05D005375 2.2e-61 239.6 202 65.3
Medtr4g083300 Medicago truncatula HOM05D004453 ORTHO05D005375 2.8e-61 239.2 205 62.9
Actinidia16228 Actinidia chinensis HOM05D004453 ORTHO05D005375 6.3e-61 238.0 208 61.1
PGR119G0742 Punica granatum HOM05D004453 ORTHO05D005375 1.8e-60 236.5 217 60.8
Ca_18793_v3 Cicer arietinum L. HOM05D004453 ORTHO05D005375 3.1e-60 235.7 202 62.9
Psat7g133480 Pisum sativum HOM05D004453 ORTHO05D005375 3.1e-60 235.7 202 63.4
THA.LOC104815673 Tarenaya hassleriana HOM05D004453 ORTHO05D005375 9.2e-60 234.2 219 58.9
Glyma.07G225000 Glycine max HOM05D004453 ORTHO05D005375 1.6e-59 233.4 202 64.4
Lalb_Chr16g0385441 Lupinus albus HOM05D004453 ORTHO05D005375 1.6e-59 233.4 211 63.0
C06p16140 Brassica napus HOM05D004453 ORTHO05D005375 2.0e-59 233.0 213 60.6
AL1G63560 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 3.5e-59 232.3 216 59.7
Carub.0001s4404 Capsella rubella HOM05D004453 ORTHO05D005375 3.5e-59 232.3 219 58.9
BcaC08g44204 Brassica carinata HOM05D004453 ORTHO05D005375 4.5e-59 231.9 219 58.9
BolC6t36812H Brassica oleracea HOM05D004453 ORTHO05D005375 4.5e-59 231.9 219 58.9
Peaxi162Scf00186g01212 Petunia axillaris HOM05D004453 ORTHO05D005375 4.5e-59 231.9 211 61.6
Phvul.002G101400 Phaseolus vulgaris HOM05D004453 ORTHO05D005375 4.5e-59 231.9 210 60.0
vmacro12597 Vaccinium macrocarpon HOM05D004453 ORTHO05D005375 4.5e-59 231.9 199 61.8
Thhalv10011735m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 5.9e-59 231.5 219 58.9
Cfa009532 Carpinus fangiana HOM05D004453 ORTHO05D005375 1.3e-58 230.3 211 60.7
AT1G55535 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 1.7e-58 229.9 219 58.4
Cc01_g00270 Coffea canephora HOM05D004453 ORTHO05D005375 2.3e-58 229.6 210 57.1
Rhsim01G0183700 Rhododendron simsii HOM05D004453 ORTHO05D005375 2.3e-58 229.6 199 61.8
Sp1g41150 Schrenkiella parvula HOM05D004453 ORTHO05D005375 2.3e-58 229.6 219 58.0
Manes.17G052200 Manihot esculenta HOM05D004453 ORTHO05D005375 3.8e-58 228.8 200 61.0
GSVIVG01025506001 Vitis vinifera HOM05D004453 ORTHO05D005375 3.8e-58 228.8 199 62.8
TAR369G0719 Trochodendron aralioides HOM05D004453 ORTHO05D005375 6.6e-58 228.0 218 59.6
Sc13g0003960 Simmondsia chinensis HOM05D004453 ORTHO05D005375 8.6e-58 227.6 199 62.3
CSS0040072 Camellia sinensis var. sinensis HOM05D004453 ORTHO05D005375 1.1e-57 227.3 209 59.8
Nn2g15897 Nelumbo nucifera HOM05D004453 ORTHO05D005375 1.5e-57 226.9 214 59.8
Eucgr.B03584 Eucalyptus grandis HOM05D004453 ORTHO05D005375 1.9e-57 226.5 201 61.2
QL01p007925 Quercus lobata HOM05D004453 ORTHO05D005375 2.5e-57 226.1 219 57.1
ClCG02G024480 Citrullus lanatus HOM05D004453 ORTHO05D005375 5.6e-57 224.9 199 60.8
ATR0068G064 Amborella trichopoda HOM05D004453 ORTHO05D005375 7.3e-57 224.6 223 57.8
Manes.16G034900 Manihot esculenta HOM05D004453 ORTHO05D005375 7.3e-57 224.6 199 60.8
MD11G1001200 Malus domestica HOM05D004453 ORTHO05D005375 9.5e-57 224.2 214 57.9
DCAR_023824 Daucus carota HOM05D004453 ORTHO05D005375 1.2e-56 223.8 205 60.5
VMungo0251G3504 Vigna mungo HOM05D004453 ORTHO05D005375 1.2e-56 223.8 201 58.7
Sed0012812 Sechium edule HOM05D004453 ORTHO05D005375 1.6e-56 223.4 199 59.3
Atru.chr4.902 Acer truncatum HOM05D004453 ORTHO05D005375 2.8e-56 222.6 200 61.0
Oeu023964.1 Olea europaea HOM05D004453 ORTHO05D005375 2.8e-56 222.6 209 56.5
arahy.Tifrunner.gnm1.ann1.C35Y2E Arachis hypogaea HOM05D004453 ORTHO05D005375 3.6e-56 222.2 197 61.4
arahy.Tifrunner.gnm1.ann1.GHD6QC Arachis hypogaea HOM05D004453 ORTHO05D005375 3.6e-56 222.2 197 61.4
Ah.04g153920 Amaranthus hybridus HOM05D004453 ORTHO05D005375 4.7e-56 221.9 209 58.4
CsaV3_4G017680 Cucumis sativus L. HOM05D004453 ORTHO05D005375 6.1e-56 221.5 214 57.5
Prupe.6G001400 Prunus persica HOM05D004453 ORTHO05D005375 6.1e-56 221.5 215 56.3
MD03G1001500 Malus domestica HOM05D004453 ORTHO05D005375 8.0e-56 221.1 220 56.8
A08p00560 Brassica napus HOM05D004453 ORTHO05D005375 1.0e-55 220.7 215 59.1
C03p92850 Brassica napus HOM05D004453 ORTHO05D005375 1.0e-55 220.7 204 61.3
BolC3t21591H Brassica oleracea HOM05D004453 ORTHO05D005375 1.0e-55 220.7 204 61.3
Lalb_Chr05g0219881 Lupinus albus HOM05D004453 ORTHO05D005375 1.0e-55 220.7 200 61.5
BraA08t32115Z Brassica rapa HOM05D004453 ORTHO05D005375 1.4e-55 220.3 215 59.1
A05p17380 Brassica napus HOM05D004453 ORTHO05D005375 1.8e-55 219.9 203 58.1
BcaB02g10815 Brassica carinata HOM05D004453 ORTHO05D005375 2.3e-55 219.5 220 56.4
AUR62040892 Chenopodium quinoa HOM05D001653 ORTHO05D001751 3.1e-55 219.2 198 60.1
Eucgr.J01746 Eucalyptus grandis HOM05D004453 ORTHO05D005375 3.1e-55 219.2 211 56.9
Solyc01g050070.4 Solanum lycopersicum HOM05D004453 ORTHO05D005375 4.0e-55 218.8 216 57.4
AUR62042621 Chenopodium quinoa HOM05D004453 ORTHO05D005375 6.8e-55 218.0 197 59.9
Potri.001G001400 Populus trichocarpa HOM05D004453 ORTHO05D005375 8.9e-55 217.6 189 61.9
Sopen01g019490 Solanum pennellii HOM05D004453 ORTHO05D005375 8.9e-55 217.6 216 56.9
BcaC01g01533 Brassica carinata HOM05D004453 ORTHO05D005375 1.2e-54 217.2 222 57.7
CDE04G0921 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 3.4e-54 215.7 199 57.3
CDE02G3000 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 7.5e-54 214.5 201 56.2
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 9.8e-54 214.2 189 61.9
PGR102G2973 Punica granatum HOM05D004453 ORTHO05D005375 1.3e-53 213.8 213 56.8
Sabra01G0001000 Salix brachista HOM05D004453 ORTHO05D005375 1.3e-53 213.8 201 57.2
Thecc.09G205600 Theobroma cacao HOM05D004453 ORTHO05D005375 1.3e-53 213.8 220 58.2
Hund01806 Selenicereus undatus HOM05D000185 ORTHO05D000105 3.7e-53 212.2 220 56.8
Ciclev10016282m.g Citrus clementina HOM05D004453 ORTHO05D005375 8.3e-53 211.1 216 57.4
MELO3C031044.2 Cucumis melo HOM05D004453 ORTHO05D005375 1.4e-52 210.3 207 57.0
FAN25G0403 Fragaria x ananassa HOM05D004453 ORTHO05D005375 3.2e-52 209.1 219 54.8
FAN16G2113 Fragaria x ananassa HOM05D004453 ORTHO05D005375 4.1e-52 208.8 219 54.8
FvH4_3g45940 Fragaria vesca HOM05D004453 ORTHO05D005375 7.0e-52 208.0 219 54.8
FAN11G3564 Fragaria x ananassa HOM05D004453 ORTHO05D005375 7.0e-52 208.0 219 54.8
FAN21G0323 Fragaria x ananassa HOM05D004453 ORTHO05D005375 7.0e-52 208.0 219 54.8
Zm00001eb303530 Zea mays HOM05D004453 ORTHO05D005375 9.2e-52 207.6 218 54.1
RcHm_v2.0_Chr5g0084051 Rosa chinensis HOM05D004453 ORTHO05D005375 1.2e-51 207.2 218 53.2
ECA238G2653 Erigeron canadensis HOM05D004453 ORTHO05D005375 2.7e-51 206.1 203 55.2
ECA248G0105 Erigeron canadensis HOM05D004453 ORTHO05D005375 4.6e-51 205.3 192 59.9
HanXRQChr14g0437111 Helianthus annuus HOM05D004453 ORTHO05D005375 1.0e-50 204.1 212 53.3
COL.COLO4_35070 Corchorus olitorius HOM05D004453 ORTHO05D005375 1.7e-50 203.4 219 56.6
Gohir.D03G147000 Gossypium hirsutum HOM05D004453 ORTHO05D005375 1.7e-50 203.4 204 57.8
EL10Ac7g17533 Beta vulgaris HOM05D004453 ORTHO05D005375 3.9e-50 202.2 209 57.4
Gorai.003G154400 Gossypium raimondii HOM05D004453 ORTHO05D005375 5.0e-50 201.8 204 57.4
HPP92_026813 Vanilla planifolia HOM05D004453 ORTHO05D005375 5.0e-50 201.8 206 53.4
CiPaw.13G179200 Carya illinoinensis HOM05D004453 ORTHO05D005375 8.6e-50 201.1 179 60.9
HPP92_000788 Vanilla planifolia HOM05D004453 ORTHO05D005375 8.6e-50 201.1 207 53.1
Os07g0223700 Oryza sativa ssp. japonica HOM05D004453 ORTHO05D005375 1.1e-49 200.7 205 54.6
Duzib150G1073 Durio zibethinus HOM05D004453 ORTHO05D005375 1.5e-49 200.3 220 55.5
Gohir.A03G021700 Gossypium hirsutum HOM05D004453 ORTHO05D005375 1.9e-49 199.9 204 57.4
Thhalv10021458m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 3.3e-49 199.1 218 51.8
AL3G25290 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 4.3e-49 198.7 162 64.8
Migut.N00531 Erythranthe guttata HOM05D004453 ORTHO05D005375 9.5e-49 197.6 195 55.9
Aa31LG8G630 Aethionema arabicum HOM05D004453 ORTHO05D005375 3.6e-48 195.7 198 56.6
CARHR088030 Cardamine hirsuta HOM05D004453 ORTHO05D005375 3.6e-48 195.7 210 53.8
SEGI_24089 Sequoiadendron giganteum HOM05D004453 ORTHO05D005375 3.6e-48 195.7 215 48.8
AT3G13420 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 4.7e-48 195.3 162 63.0
Carub.0003s1279 Capsella rubella HOM05D004453 ORTHO05D005375 1.1e-47 194.1 162 62.3
Gohir.A08G014200 Gossypium hirsutum HOM05D004453 ORTHO05D005375 4.0e-47 192.2 225 52.9
Sp3g11610 Schrenkiella parvula HOM05D004453 ORTHO05D005375 6.8e-47 191.4 172 62.8
A05p36110 Brassica napus HOM05D004453 ORTHO05D005375 8.9e-47 191.0 172 61.0
C05p54480 Brassica napus HOM05D004453 ORTHO05D005375 1.5e-46 190.3 172 59.9
BolC5t34115H Brassica oleracea HOM05D004453 ORTHO05D005375 1.5e-46 190.3 172 59.9
Aa31LG10G710 Aethionema arabicum HOM05D004453 ORTHO05D005375 2.6e-46 189.5 218 51.4
Gohir.D08G020800 Gossypium hirsutum HOM05D004453 ORTHO05D005375 5.8e-46 188.3 225 52.0
Gorai.004G020100 Gossypium raimondii HOM05D004453 ORTHO05D005375 5.8e-46 188.3 225 52.0
SGA_v2.0_scaffold3G01700 Striga asiatica HOM05D004453 ORTHO05D005375 7.5e-46 188.0 199 54.8
SGA_v2.0_scaffold6G03329 Striga asiatica HOM05D004453 ORTHO05D005375 1.7e-45 186.8 189 54.0
MSTRG.18889 Avicennia marina HOM05D004453 ORTHO05D005375 2.9e-45 186.0 202 53.0
Lsat_1_v5_gn_2_50660 Lactuca sativa HOM05D004453 ORTHO05D005375 2.9e-45 186.0 196 53.1
BcaC05g29180 Brassica carinata HOM05D004453 ORTHO05D005375 4.9e-45 185.3 144 66.0
Lsat_1_v5_gn_1_71301 Lactuca sativa HOM05D004453 ORTHO05D005375 6.4e-45 184.9 209 52.2
Potri.003G223300 Populus trichocarpa HOM05D004453 ORTHO05D005375 4.1e-44 182.2 199 52.3
Haze_22921 Corylus avellana HOM05D004453 ORTHO05D005375 3.3e-41 172.6 175 56.0
SMO271G0148 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 2.8e-40 169.5 194 54.1
SHI31305 Sapria himalayana HOM05D004453 ORTHO05D005375 1.4e-39 167.2 195 51.3
Nitab4.5_0002355g0020 Nicotiana tabacum HOM05D004453 ORTHO05D005375 1.8e-39 166.8 198 51.5
AagrBONN_evm.TU.Sc2ySwM_228.4359 Anthoceros agrestis HOM05D004453 ORTHO05D005375 4.0e-39 165.6 200 49.0
BraA05t20635Z Brassica rapa HOM05D004453 ORTHO05D005375 3.4e-38 162.5 138 63.8
SHI06880 Sapria himalayana HOM05D004453 ORTHO05D005375 8.3e-37 157.9 168 54.2
SalBow3G0087 Salvia bowleyana HOM05D004453 ORTHO05D005375 1.9e-36 156.8 161 52.2
SMO203G0107 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 2.1e-35 153.3 198 49.0
Nitab4.5_0000075g0210 Nicotiana tabacum HOM05D004453 ORTHO05D005375 5.6e-33 145.2 216 42.6
Lj1C553T1 Lonicera japonica HOM05D004453 ORTHO05D005375 9.5e-33 144.4 100 74.0
CARHR152870 Cardamine hirsuta HOM05D004453 ORTHO05D005375 1.6e-32 143.7 114 67.5
unitig_62.g23532 Utricularia gibba HOM05D004453 ORTHO05D005375 2.1e-32 143.3 203 43.8
Mapoly0036s0042 Marchantia polymorpha HOM05D004453 ORTHO05D005375 2.0e-30 136.7 199 42.2
Pp3c14_21170 Physcomitrium patens HOM05D004453 ORTHO05D005375 4.4e-30 135.6 195 43.1
unitig_52.g17526 Utricularia gibba HOM05D004453 ORTHO05D005375 9.9e-30 134.4 206 43.2
Actinidia30440 Actinidia chinensis HOM05D004453 ORTHO05D005375 3.2e-28 129.4 96 70.8
Pp3c2_4610 Physcomitrium patens HOM05D004453 ORTHO05D005375 2.1e-27 126.7 213 39.4
Pp3c1_38420 Physcomitrium patens HOM05D004453 ORTHO05D005375 2.7e-27 126.3 190 44.7
HPP92_019023 Vanilla planifolia HOM05D004453 ORTHO05D005375 1.4e-23 114.0 93 59.1
SMO353G0048 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 2.4e-23 113.2 201 39.8
Lj1C553T2 Lonicera japonica HOM05D004453 ORTHO05D005375 2.5e-17 93.2 116 46.6
Oeu060910.1 Olea europaea HOM05D004453 ORTHO05D005375 5.4e-12 75.5 96 42.7
SMO308G0081 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 5.1e-10 68.9 85 60.0
Zm00001eb095200 Zea mays HOM05D004453 ORTHO05D005375 6.7e-10 68.6 96 42.7
BcaB01g02219 Brassica carinata HOM05D004453 ORTHO05D005375 4.8e-08 62.4 89 39.3
MCO11G868 Micromonas commoda HOM05D004453 ORTHO05D005375 6.2e-08 62.0 145 30.3
CBR_g35002 Chara braunii HOM05D000321 ORTHO05D000204 1.4e-07 60.8 63 55.6
Psat5g028160 Pisum sativum HOM05D004453 ORTHO05D005375 4.5e-06 55.8 49 53.1
HPP92_019024 Vanilla planifolia HOM05D004453 ORTHO05D005375 5.8e-06 55.5 79 44.3


User provided reference genes

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