Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G5084 Papaver somniferum HOM05D004278 ORTHO05D005544 1.4e-106 389.8 223 100.0
PSO675G8903 Papaver somniferum HOM05D004278 ORTHO05D005544 5.3e-106 387.9 223 99.6
TAR628G0274 Trochodendron aralioides HOM05D004278 ORTHO05D005544 2.4e-98 362.5 223 92.8
TWI31G1137 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 2.6e-97 359.0 223 91.9
Cpa.g.sc62.151 Carica papaya HOM05D004278 ORTHO05D005544 5.9e-97 357.8 223 93.3
Manes.15G163400 Manihot esculenta HOM05D004278 ORTHO05D005544 5.9e-97 357.8 223 92.4
CiPaw.05G064500 Carya illinoinensis HOM05D004278 ORTHO05D005544 7.7e-97 357.5 223 91.5
TWI75G0915 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 7.7e-97 357.5 223 91.5
Prupe.8G096900 Prunus persica HOM05D004278 ORTHO05D005544 2.9e-96 355.5 223 92.4
Atru.chr5.3016 Acer truncatum HOM05D004278 ORTHO05D005544 5.0e-96 354.8 226 90.3
Glyma.13G241500 Glycine max HOM05D004278 ORTHO05D005544 5.0e-96 354.8 223 91.0
Glyma.15G071900 Glycine max HOM05D004278 ORTHO05D005544 6.5e-96 354.4 223 91.0
arahy.Tifrunner.gnm1.ann1.673KA0 Arachis hypogaea HOM05D004278 ORTHO05D005544 8.5e-96 354.0 223 91.0
Gohir.A13G034300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.9e-95 352.8 223 90.6
MD10G1076300 Malus domestica HOM05D004278 ORTHO05D005544 3.2e-95 352.1 223 91.5
Nn5g29610 Nelumbo nucifera HOM05D004278 ORTHO05D005544 3.2e-95 352.1 223 90.6
VMungo0540G2365 Vigna mungo HOM05D004278 ORTHO05D005544 3.2e-95 352.1 223 91.0
QL11p043693 Quercus lobata HOM05D004278 ORTHO05D005544 4.2e-95 351.7 221 90.0
Gohir.D13G032700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 7.2e-95 350.9 223 90.1
Sed0011539 Sechium edule HOM05D004278 ORTHO05D005544 7.2e-95 350.9 223 91.9
Aqoxy2G01125 Aquilegia oxysepala HOM05D004278 ORTHO05D005544 1.2e-94 350.1 222 91.4
CsaV3_7G023570 Cucumis sativus L. HOM05D004278 ORTHO05D005544 1.2e-94 350.1 223 92.4
Thecc.02G085200 Theobroma cacao HOM05D004278 ORTHO05D005544 1.2e-94 350.1 223 89.7
Gohir.D02G215700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.6e-94 349.7 224 90.6
Gorai.005G243700 Gossypium raimondii HOM05D004278 ORTHO05D005544 1.6e-94 349.7 224 90.6
Gorai.013G037100 Gossypium raimondii HOM05D004278 ORTHO05D005544 1.6e-94 349.7 223 90.1
PGR042G2304 Punica granatum HOM05D004278 ORTHO05D005544 2.7e-94 349.0 222 90.5
RcHm_v2.0_Chr7g0222141 Rosa chinensis HOM05D004278 ORTHO05D005544 2.7e-94 349.0 225 90.7
MELO3C012522.2 Cucumis melo HOM05D004278 ORTHO05D005544 3.6e-94 348.6 223 91.9
Manes.17G101100 Manihot esculenta HOM05D004278 ORTHO05D005544 3.6e-94 348.6 223 91.0
Gohir.A03G194500 Gossypium hirsutum HOM05D004278 ORTHO05D005544 4.7e-94 348.2 224 90.2
Ciclev10029226m.g Citrus clementina HOM05D004278 ORTHO05D005544 6.1e-94 347.8 227 88.1
COL.COLO4_25931 Corchorus olitorius HOM05D004278 ORTHO05D005544 8.0e-94 347.4 223 89.7
Duzib132G1254 Durio zibethinus HOM05D004278 ORTHO05D005544 8.0e-94 347.4 223 90.1
Phvul.006G187900 Phaseolus vulgaris HOM05D004278 ORTHO05D005544 1.0e-93 347.1 223 89.7
ClCG02G005010 Citrullus lanatus HOM05D004278 ORTHO05D005544 1.8e-93 346.3 236 87.3
MD05G1066300 Malus domestica HOM05D004278 ORTHO05D005544 3.0e-93 345.5 223 89.7
Eucgr.I00724 Eucalyptus grandis HOM05D004278 ORTHO05D005544 5.2e-93 344.7 222 90.5
Lalb_Chr09g0330921 Lupinus albus HOM05D004278 ORTHO05D005544 5.2e-93 344.7 223 89.2
Lalb_Chr16g0387561 Lupinus albus HOM05D004278 ORTHO05D005544 6.7e-93 344.4 223 89.2
Medtr8g010570 Medicago truncatula HOM05D004278 ORTHO05D005544 6.7e-93 344.4 223 88.3
Dinv42064 Davidia involucrata HOM05D004278 ORTHO05D005544 8.8e-93 344.0 229 88.6
Oeu055570.1 Olea europaea HOM05D004278 ORTHO05D005544 8.8e-93 344.0 229 88.6
Lj2g0008973 Lotus japonicus HOM05D004278 ORTHO05D005544 1.1e-92 343.6 229 87.3
GSVIVG01031966001 Vitis vinifera HOM05D004278 ORTHO05D005544 1.1e-92 343.6 222 88.7
CANSAT01G0337 Cannabis sativa HOM05D004278 ORTHO05D005544 2.6e-92 342.4 223 89.7
FvH4_5g29280 Fragaria vesca HOM05D004278 ORTHO05D005544 4.4e-92 341.7 225 88.9
Psat4g207360 Pisum sativum HOM05D004278 ORTHO05D005544 9.7e-92 340.5 223 87.0
Dinv23521 Davidia involucrata HOM05D004278 ORTHO05D005544 1.3e-91 340.1 229 87.8
SalBow6G3946 Salvia bowleyana HOM05D004278 ORTHO05D005544 1.3e-91 340.1 229 88.2
SalBow6G5126 Salvia bowleyana HOM05D004278 ORTHO05D005544 1.3e-91 340.1 229 88.2
CSS0030568 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 1.7e-91 339.7 229 87.3
TPR.G9766 Trifolium pratense HOM05D004278 ORTHO05D005544 2.2e-91 339.3 223 87.0
FAN18G1232 Fragaria x ananassa HOM05D004278 ORTHO05D005544 2.8e-91 339.0 225 88.4
Hund00270 Selenicereus undatus HOM05D004278 ORTHO05D005544 2.8e-91 339.0 225 88.4
FAN08G1460 Fragaria x ananassa HOM05D004278 ORTHO05D005544 3.7e-91 338.6 225 88.4
Nitab4.5_0005152g0090 Nicotiana tabacum HOM05D004278 ORTHO05D005544 4.8e-91 338.2 230 87.0
Actinidia27895 Actinidia chinensis HOM05D004278 ORTHO05D005544 1.4e-90 336.7 227 87.7
CDE10G0378 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 1.4e-90 336.7 223 88.3
Peaxi162Scf00016g00727 Petunia axillaris HOM05D004278 ORTHO05D005544 2.4e-90 335.9 230 87.4
HanXRQChr05g0152721 Helianthus annuus HOM05D004278 ORTHO05D005544 3.1e-90 335.5 229 88.2
Potri.009G116000 Populus trichocarpa HOM05D004278 ORTHO05D005544 3.1e-90 335.5 223 87.9
Sopen10g023040 Solanum pennellii HOM05D004278 ORTHO05D005544 3.1e-90 335.5 230 85.7
PGSC0003DMG400033912 Solanum tuberosum HOM05D004278 ORTHO05D005544 3.1e-90 335.5 230 85.7
HanXRQChr16g0505671 Helianthus annuus HOM05D004278 ORTHO05D005544 5.3e-90 334.7 228 88.2
Rhsim11G0177100 Rhododendron simsii HOM05D004278 ORTHO05D005544 5.3e-90 334.7 223 89.2
Nitab4.5_0004172g0100 Nicotiana tabacum HOM05D004278 ORTHO05D005544 7.0e-90 334.3 230 87.0
THA.LOC104804724 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 7.0e-90 334.3 223 87.0
DCAR_022973 Daucus carota HOM05D004278 ORTHO05D005544 9.1e-90 334.0 228 85.5
Solyc01g109620.3 Solanum lycopersicum HOM05D004278 ORTHO05D005544 1.2e-89 333.6 230 87.0
Sopen01g051810 Solanum pennellii HOM05D004278 ORTHO05D005544 1.2e-89 333.6 230 87.0
PGSC0003DMG400000726 Solanum tuberosum HOM05D004278 ORTHO05D005544 1.2e-89 333.6 230 87.0
Haze_02384 Corylus avellana HOM05D004278 ORTHO05D005544 2.0e-89 332.8 223 87.9
Solyc10g051350.2 Solanum lycopersicum HOM05D004278 ORTHO05D005544 2.0e-89 332.8 230 85.2
MSTRG.5398 Avicennia marina HOM05D004278 ORTHO05D005544 2.7e-89 332.4 229 85.6
EL10Ac9g21724 Beta vulgaris HOM05D004278 ORTHO05D005544 2.7e-89 332.4 225 86.7
Ah.01g019390 Amaranthus hybridus HOM05D004278 ORTHO05D005544 4.5e-89 331.6 225 86.7
CAN.G1.42 Capsicum annuum HOM05D004278 ORTHO05D005544 5.9e-89 331.3 233 85.8
Cc02_g25830 Coffea canephora HOM05D004278 ORTHO05D005544 5.9e-89 331.3 229 86.0
A07p27370 Brassica napus HOM05D004278 ORTHO05D005544 7.7e-89 330.9 223 85.2
BraA07t30378Z Brassica rapa HOM05D004278 ORTHO05D005544 7.7e-89 330.9 223 85.2
Sp1g14840 Schrenkiella parvula HOM05D004278 ORTHO05D005544 7.7e-89 330.9 223 86.5
AUR62011323 Chenopodium quinoa HOM05D004278 ORTHO05D005544 1.0e-88 330.5 224 87.1
AUR62016737 Chenopodium quinoa HOM05D004278 ORTHO05D005544 1.0e-88 330.5 224 87.1
Ca_17260_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 1.0e-88 330.5 228 84.2
Hma1.2p1_0066F.1_g036410 Hydrangea macrophylla HOM05D004278 ORTHO05D005544 1.0e-88 330.5 232 86.2
Migut.N01239 Erythranthe guttata HOM05D004278 ORTHO05D005544 1.3e-88 330.1 229 86.5
AL1G28860 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 1.7e-88 329.7 223 86.1
AT1G16700 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 1.7e-88 329.7 223 86.1
BcaC08g45392 Brassica carinata HOM05D004278 ORTHO05D005544 1.7e-88 329.7 223 85.2
THA.LOC104815454 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 1.7e-88 329.7 220 86.8
Carub.0001s1643 Capsella rubella HOM05D004278 ORTHO05D005544 2.9e-88 328.9 223 85.7
Thhalv10008714m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 2.9e-88 328.9 223 86.1
Lsat_1_v5_gn_9_108541 Lactuca sativa HOM05D004278 ORTHO05D005544 3.8e-88 328.6 229 86.9
C06p30230 Brassica napus HOM05D004278 ORTHO05D005544 5.0e-88 328.2 223 84.8
BolC6t38186H Brassica oleracea HOM05D004278 ORTHO05D005544 5.0e-88 328.2 223 84.8
Sp5g34060 Schrenkiella parvula HOM05D004278 ORTHO05D005544 5.0e-88 328.2 223 84.8
CARHR017160 Cardamine hirsuta HOM05D004278 ORTHO05D005544 8.5e-88 327.4 223 85.7
Thhalv10019110m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 8.5e-88 327.4 223 84.8
BcaC08g47465 Brassica carinata HOM05D004278 ORTHO05D005544 1.9e-87 326.2 223 84.8
C06p52880 Brassica napus HOM05D004278 ORTHO05D005544 1.9e-87 326.2 223 84.8
BolC6t40306H Brassica oleracea HOM05D004278 ORTHO05D005544 1.9e-87 326.2 223 84.8
Lsat_1_v5_gn_7_89240 Lactuca sativa HOM05D004278 ORTHO05D005544 2.5e-87 325.9 228 86.0
A07p44150 Brassica napus HOM05D004278 ORTHO05D005544 3.2e-87 325.5 223 84.3
BraA07t31923Z Brassica rapa HOM05D004278 ORTHO05D005544 3.2e-87 325.5 223 84.3
Ah.01g006270 Amaranthus hybridus HOM05D004278 ORTHO05D005544 4.2e-87 325.1 225 85.8
AL2G39470 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 4.2e-87 325.1 223 84.8
AT1G79010 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 4.2e-87 325.1 223 84.8
BcaB02g07191 Brassica carinata HOM05D004278 ORTHO05D005544 4.2e-87 325.1 224 84.4
Carub.0002s2588 Capsella rubella HOM05D004278 ORTHO05D005544 5.5e-87 324.7 223 84.3
ECA240G2473 Erigeron canadensis HOM05D004278 ORTHO05D005544 7.2e-87 324.3 225 85.8
A06p12670 Brassica napus HOM05D004278 ORTHO05D005544 9.4e-87 323.9 223 84.8
unitig_22.g5173 Utricularia gibba HOM05D004278 ORTHO05D005544 4.7e-86 321.6 228 82.9
MBI16_g28725_MAGBIO Magnolia biondii HOM05D004278 ORTHO05D005544 1.8e-85 319.7 209 91.4
vmacro02107 Vaccinium macrocarpon HOM05D004278 ORTHO05D005544 2.3e-85 319.3 269 74.7
C05p14970 Brassica napus HOM05D004278 ORTHO05D005544 5.2e-85 318.2 223 84.3
CAN.G1412.6 Capsicum annuum HOM05D004278 ORTHO05D005544 5.7e-84 314.7 188 95.7
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 1.3e-83 313.5 202 88.6
Nitab4.5_0001361g0250 Nicotiana tabacum HOM05D004278 ORTHO05D005544 4.8e-83 311.6 211 88.2
HPP92_001858 Vanilla planifolia HOM05D004278 ORTHO05D005544 1.1e-82 310.5 227 83.7
SGA_v2.0_scaffold58G20535 Striga asiatica HOM05D004278 ORTHO05D005544 1.4e-82 310.1 188 95.2
Aa31LG7G1160 Aethionema arabicum HOM05D002153 ORTHO05D002137 2.4e-82 309.3 205 86.8
Duzib052G0763 Durio zibethinus HOM05D004278 ORTHO05D005544 4.1e-82 308.5 229 80.8
Os03g0774200 Oryza sativa ssp. japonica HOM05D004278 ORTHO05D005544 5.4e-82 308.1 226 82.3
Zm00001eb059090 Zea mays HOM05D004278 ORTHO05D005544 2.7e-81 305.8 226 82.3
CARHR072680 Cardamine hirsuta HOM05D004278 ORTHO05D005544 1.3e-80 303.5 198 88.9
BraA06t24427Z Brassica rapa HOM05D002153 ORTHO05D002137 2.2e-80 302.8 198 88.4
Nitab4.5_0000308g0130 Nicotiana tabacum HOM05D004278 ORTHO05D005544 5.0e-80 301.6 184 94.6
Hund06234 Selenicereus undatus HOM05D004278 ORTHO05D005544 5.0e-80 301.6 281 61.9
ATR0733G183 Amborella trichopoda HOM05D004278 ORTHO05D005544 1.5e-79 300.1 179 96.6
arahy.Tifrunner.gnm1.ann1.Z91YIY Arachis hypogaea HOM05D004278 ORTHO05D005544 8.8e-77 290.8 191 89.0
BcaC05g25531 Brassica carinata HOM05D002153 ORTHO05D002137 5.7e-76 288.1 200 86.5
SEGI_37571 Sequoiadendron giganteum HOM05D004278 ORTHO05D005544 8.3e-75 284.3 180 90.6
Lj5A197T63 Lonicera japonica HOM05D004278 ORTHO05D005544 3.1e-74 282.3 168 97.0
Sc18g0004460 Simmondsia chinensis HOM05D004278 ORTHO05D005544 6.6e-72 274.6 193 86.0
BolC5t30212H Brassica oleracea HOM05D004278 ORTHO05D005544 4.3e-71 271.9 223 73.1
Pp3c9_8460 Physcomitrium patens HOM05D004278 ORTHO05D005544 5.6e-71 271.6 187 86.1
SGA_v2.0_scaffold32G13166 Striga asiatica HOM05D004278 ORTHO05D005544 1.2e-70 270.4 197 83.8
Pp3c15_4330 Physcomitrium patens HOM05D004278 ORTHO05D005544 2.1e-70 269.6 186 85.5
Gorai.008G028900 Gossypium raimondii HOM05D004278 ORTHO05D005544 8.9e-69 264.2 220 66.8
CBR_g34677 Chara braunii HOM05D004278 ORTHO05D005544 3.7e-67 258.8 169 88.8
Mapoly0008s0062 Marchantia polymorpha HOM05D004278 ORTHO05D005544 6.4e-67 258.1 226 71.7
SMO228G0074 Selaginella moellendorffii HOM05D004278 ORTHO05D005544 7.0e-66 254.6 217 72.8
Gohir.A12G028800 Gossypium hirsutum HOM05D004278 ORTHO05D005544 3.5e-65 252.3 181 82.3
Actinidia17816 Actinidia chinensis HOM05D004278 ORTHO05D005544 2.8e-62 242.7 148 98.0
Glyma.05G236100 Glycine max HOM05D004278 ORTHO05D005544 1.4e-61 240.4 148 93.2
MCO04G399 Micromonas commoda HOM05D004278 ORTHO05D005544 1.5e-60 236.9 202 72.8
PRCOL_00001402 Prasinoderma coloniale HOM05D004278 ORTHO05D005544 2.4e-58 229.6 202 69.3
Gohir.D12G028300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 7.0e-58 228.0 238 59.2
Cre12.g496750 Chlamydomonas reinhardtii HOM05D004278 ORTHO05D005544 1.6e-57 226.9 178 78.1
CDE10G0028 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 2.0e-57 226.5 137 98.5
CSS0043835 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 4.6e-57 225.3 178 70.2
Zm00001eb213750 Zea mays HOM05D004278 ORTHO05D005544 2.3e-56 223.0 154 72.7
TAR376G0025 Trochodendron aralioides HOM05D002092 ORTHO05D005410 8.6e-56 221.1 114 92.1
Haze_27004 Corylus avellana HOM05D004278 ORTHO05D005544 2.8e-54 216.1 214 66.8
AagrBONN_evm.TU.Sc2ySwM_117.1035 Anthoceros agrestis HOM05D004278 ORTHO05D005544 2.6e-52 209.5 163 78.5
Ca_17266_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 9.8e-52 207.6 137 74.5
Potri.004G154900 Populus trichocarpa HOM05D004278 ORTHO05D005544 1.1e-50 204.1 132 95.5
Cfa025738 Carpinus fangiana HOM05D004278 ORTHO05D005544 1.2e-49 200.7 159 77.4
Lj2g0023328 Lotus japonicus HOM05D004278 ORTHO05D005544 5.6e-47 191.8 161 64.6
HPP92_001874 Vanilla planifolia HOM05D004278 ORTHO05D431721 8.4e-35 151.4 122 66.4
TAR625G0183 Trochodendron aralioides HOM05D004278 ORTHO05D416112 2.7e-33 146.4 127 60.6
Sc08g0000500 Simmondsia chinensis HOM05D004278 ORTHO05D021139 8.1e-30 134.8 225 43.1
Thhalv10017872m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 2.6e-28 129.8 203 42.4
Lsat_1_v5_gn_5_118541 Lactuca sativa HOM05D004278 ORTHO05D021139 8.4e-19 98.2 109 50.5
TAR376G0081 Trochodendron aralioides HOM05D004278 ORTHO05D021139 1.4e-18 97.4 47 100.0
HanXRQChr15g0486481 Helianthus annuus HOM05D004278 ORTHO05D021139 3.5e-17 92.8 78 65.4
Ca_28908_v3 Cicer arietinum L. HOM05D004278 ORTHO05D004593 1.8e-08 63.9 109 45.0
Lsat_1_v5_gn_3_134741 Lactuca sativa HOM05D004278 ORTHO05D021139 1.5e-07 60.8 60 53.3


User provided reference genes

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