Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G5056 Papaver somniferum HOM05D006937 ORTHO05D008747 1.9e-66 255.8 134 100.0
PSO675G6138 Papaver somniferum HOM05D006937 ORTHO05D008747 9.7e-63 243.4 144 91.7
TAR629G2875 Trochodendron aralioides HOM05D006937 ORTHO05D008747 2.0e-52 209.1 142 75.4
CiPaw.06G089000 Carya illinoinensis HOM05D006937 ORTHO05D008747 4.5e-52 208.0 142 75.4
ATR0730G163 Amborella trichopoda HOM05D006937 ORTHO05D008747 1.0e-51 206.8 140 75.7
CSS0011527 Camellia sinensis var. sinensis HOM05D006937 ORTHO05D008747 1.3e-51 206.5 140 77.1
Ciclev10032989m.g Citrus clementina HOM05D006937 ORTHO05D008747 6.5e-51 204.1 142 74.6
Hund25447 Selenicereus undatus HOM05D006937 ORTHO05D008747 1.5e-50 203.0 134 73.9
Sed0004013 Sechium edule HOM05D006937 ORTHO05D008747 4.2e-50 201.4 142 73.2
Sed0007221 Sechium edule HOM05D006937 ORTHO05D008747 4.2e-50 201.4 142 72.5
Duzib268G1027 Durio zibethinus HOM05D006937 ORTHO05D008747 7.2e-50 200.7 130 73.8
Nn3g17337 Nelumbo nucifera HOM05D006937 ORTHO05D008747 7.2e-50 200.7 142 73.9
Dinv34099 Davidia involucrata HOM05D003669 ORTHO05D005046 9.4e-50 200.3 140 72.9
Gohir.A05G305601 Gossypium hirsutum HOM05D006937 ORTHO05D008747 9.4e-50 200.3 140 72.9
Nitab4.5_0000391g0170 Nicotiana tabacum HOM05D006937 ORTHO05D008747 1.2e-49 199.9 132 75.8
AUR62024142 Chenopodium quinoa HOM05D006937 ORTHO05D008747 2.1e-49 199.1 130 73.8
DCAR_018308 Daucus carota HOM05D006937 ORTHO05D008747 3.6e-49 198.4 144 71.5
Eucgr.G02475 Eucalyptus grandis HOM05D006937 ORTHO05D008747 3.6e-49 198.4 142 71.8
Gohir.D05G305600 Gossypium hirsutum HOM05D006937 ORTHO05D008747 4.7e-49 198.0 140 72.1
Gorai.009G325600 Gossypium raimondii HOM05D006937 ORTHO05D008747 8.0e-49 197.2 140 71.4
MELO3C024261.2 Cucumis melo HOM05D006937 ORTHO05D008747 1.4e-48 196.4 141 72.3
QL03p069840 Quercus lobata HOM05D006937 ORTHO05D008747 1.4e-48 196.4 142 72.5
Thecc.02G339100 Theobroma cacao HOM05D006937 ORTHO05D008747 1.4e-48 196.4 142 70.4
MSTRG.2329 Avicennia marina HOM05D006937 ORTHO05D008747 1.8e-48 196.1 140 70.7
Os07g0595800 Oryza sativa ssp. japonica HOM05D006937 ORTHO05D008747 2.3e-48 195.7 141 69.5
MD16G1066900 Malus domestica HOM05D006937 ORTHO05D008747 3.0e-48 195.3 142 70.4
Manes.01G032100 Manihot esculenta HOM05D006937 ORTHO05D008747 3.0e-48 195.3 142 70.4
Glyma.01G053200 Glycine max HOM05D006937 ORTHO05D008747 4.0e-48 194.9 142 69.0
CANSAT64G0520 Cannabis sativa HOM05D006937 ORTHO05D008747 5.2e-48 194.5 142 69.7
Cc11_g12540 Coffea canephora HOM05D006937 ORTHO05D008747 5.2e-48 194.5 142 70.4
Aqoxy3G03499 Aquilegia oxysepala HOM05D006937 ORTHO05D008747 6.8e-48 194.1 140 70.7
Aqoxy5G02063 Aquilegia oxysepala HOM05D006937 ORTHO05D008747 6.8e-48 194.1 140 70.7
CsaV3_7G033500 Cucumis sativus L. HOM05D006937 ORTHO05D008747 6.8e-48 194.1 141 70.9
CAN.G1642.3 Capsicum annuum HOM05D006937 ORTHO05D008747 8.8e-48 193.7 142 69.0
Prupe.1G280000 Prunus persica HOM05D006937 ORTHO05D008747 8.8e-48 193.7 142 70.4
SGA_v2.0_scaffold287G47146 Striga asiatica HOM05D006937 ORTHO05D008747 8.8e-48 193.7 140 70.0
Atru.chr11.1713 Acer truncatum HOM05D006937 ORTHO05D008747 1.2e-47 193.4 142 71.8
CAN.G964.22 Capsicum annuum HOM05D006937 ORTHO05D008747 1.2e-47 193.4 142 69.0
Haze_11954 Corylus avellana HOM05D006937 ORTHO05D008747 1.2e-47 193.4 151 67.5
MD13G1068100 Malus domestica HOM05D006937 ORTHO05D008747 1.5e-47 193.0 142 69.7
Zm00001eb326530 Zea mays HOM05D006937 ORTHO05D008747 1.5e-47 193.0 139 68.3
Migut.E00068 Erythranthe guttata HOM05D006937 ORTHO05D008747 2.0e-47 192.6 140 69.3
Aqoxy5G02982 Aquilegia oxysepala HOM05D006937 ORTHO05D008747 2.6e-47 192.2 139 70.5
Glyma.02G111700 Glycine max HOM05D006937 ORTHO05D008747 3.4e-47 191.8 142 68.3
Sopen05g007730 Solanum pennellii HOM05D006937 ORTHO05D008747 4.4e-47 191.4 140 67.9
GSVIVG01025409001 Vitis vinifera HOM05D006937 ORTHO05D008747 4.4e-47 191.4 142 69.7
COL.COLO4_27967 Corchorus olitorius HOM05D006937 ORTHO05D008747 5.7e-47 191.0 142 66.9
AUR62005588 Chenopodium quinoa HOM05D006937 ORTHO05D008747 7.5e-47 190.7 126 73.0
EL10Ac6g13467 Beta vulgaris HOM05D006937 ORTHO05D008747 9.8e-47 190.3 140 69.3
TWI60G0457 Tripterygium wilfordii HOM05D006937 ORTHO05D008747 1.3e-46 189.9 138 69.6
PGSC0003DMG401028340 Solanum tuberosum HOM05D006937 ORTHO05D008747 2.2e-46 189.1 140 67.9
ECA246G2190 Erigeron canadensis HOM05D006937 ORTHO05D008747 2.8e-46 188.7 140 68.6
SGA_v2.0_scaffold114G32026 Striga asiatica HOM05D006937 ORTHO05D008747 8.3e-46 187.2 150 66.0
Lj1g0016193 Lotus japonicus HOM05D006937 ORTHO05D008747 1.4e-45 186.4 142 65.5
VMungo1215G2773 Vigna mungo HOM05D006937 ORTHO05D008747 1.8e-45 186.0 141 65.2
Lj3A1033G46 Lonicera japonica HOM05D006937 ORTHO05D008747 2.4e-45 185.7 131 72.5
Lalb_Chr10g0098481 Lupinus albus HOM05D006937 ORTHO05D008747 3.1e-45 185.3 140 66.4
Medtr5g042620 Medicago truncatula HOM05D006937 ORTHO05D008747 4.1e-45 184.9 142 63.4
Potri.008G091400 Populus trichocarpa HOM05D006937 ORTHO05D008747 4.1e-45 184.9 142 66.2
FvH4_4g30700 Fragaria vesca HOM05D006937 ORTHO05D008747 7.0e-45 184.1 142 66.9
Lj6g0000786 Lotus japonicus HOM05D006937 ORTHO05D008747 9.1e-45 183.7 142 64.1
HanXRQChr17g0537301 Helianthus annuus HOM05D006937 ORTHO05D008747 1.2e-44 183.3 137 68.6
RcHm_v2.0_Chr4g0439101 Rosa chinensis HOM05D006937 ORTHO05D008747 1.6e-44 183.0 142 66.2
Phvul.001G169600 Phaseolus vulgaris HOM05D006937 ORTHO05D008747 2.0e-44 182.6 142 64.1
FAN17G2174 Fragaria x ananassa HOM05D006937 ORTHO05D008747 2.7e-44 182.2 142 66.2
HPP92_013408 Vanilla planifolia HOM05D006937 ORTHO05D008747 2.7e-44 182.2 116 75.9
arahy.Tifrunner.gnm1.ann1.TRF8LB Arachis hypogaea HOM05D006937 ORTHO05D008747 4.5e-44 181.4 142 67.6
Lsat_1_v5_gn_3_20221 Lactuca sativa HOM05D006937 ORTHO05D008747 4.5e-44 181.4 143 65.0
FAN07G0310 Fragaria x ananassa HOM05D006937 ORTHO05D008747 1.0e-43 180.3 142 65.5
unitig_744.g24284 Utricularia gibba HOM05D006937 ORTHO05D008747 2.9e-43 178.7 152 59.9
SEGI_41088 Sequoiadendron giganteum HOM05D006937 ORTHO05D008747 3.8e-43 178.3 133 67.7
Eucgr.D01709 Eucalyptus grandis HOM05D006937 ORTHO05D008747 1.5e-42 176.4 140 67.1
Oeu016239.1 Olea europaea HOM05D006937 ORTHO05D008747 7.2e-42 174.1 129 70.5
arahy.Tifrunner.gnm1.ann1.A48TS2 Arachis hypogaea HOM05D006937 ORTHO05D008747 1.2e-41 173.3 149 63.8
arahy.Tifrunner.gnm1.ann1.8BL9U8 Arachis hypogaea HOM05D006937 ORTHO05D008747 1.6e-41 172.9 142 65.5
TPR.G19944 Trifolium pratense HOM05D006937 ORTHO05D008747 4.7e-41 171.4 142 56.3
CDE11G0882 Ceratophyllum demersum HOM05D006937 ORTHO05D008747 1.8e-40 169.5 156 58.3
Nitab4.5_0008978g0010 Nicotiana tabacum HOM05D006937 ORTHO05D008747 2.0e-39 166.0 189 51.9
SHI35111 Sapria himalayana HOM05D006937 ORTHO05D008747 3.4e-39 165.2 125 65.6
Psat2g127680 Pisum sativum HOM05D006937 ORTHO05D008747 7.5e-39 164.1 130 61.5
Actinidia31958 Actinidia chinensis HOM05D003669 ORTHO05D005046 3.2e-37 158.7 149 59.7
Peaxi162Scf00222g00024 Petunia axillaris HOM05D006937 ORTHO05D008747 7.0e-37 157.5 106 70.8
Rhsim12G0077900 Rhododendron simsii HOM05D006937 ORTHO05D008747 7.0e-37 157.5 121 67.8
FAN12G3635 Fragaria x ananassa HOM05D006937 ORTHO05D008747 1.3e-35 153.3 101 74.3
Sc11g0000570 Simmondsia chinensis HOM05D006937 ORTHO05D008747 1.3e-35 153.3 111 69.4
AagrBONN_evm.TU.Sc2ySwM_228.447 Anthoceros agrestis HOM05D006937 ORTHO05D008747 1.5e-34 149.8 142 57.0
PGR119G1353 Punica granatum HOM05D006937 ORTHO05D008747 1.2e-33 146.7 145 52.4
PGR142G2813 Punica granatum HOM05D006937 ORTHO05D008747 1.4e-32 143.3 140 52.9
CSS0016362 Camellia sinensis var. sinensis HOM05D006937 ORTHO05D008747 6.8e-32 141.0 135 60.0
AL1G39070 Arabidopsis lyrata HOM05D006937 ORTHO05D008747 1.2e-31 140.2 140 54.3
Ca_04880_v3 Cicer arietinum L. HOM05D006937 ORTHO05D008747 1.5e-31 139.8 112 59.8
Mapoly0006s0094 Marchantia polymorpha HOM05D006937 ORTHO05D008747 2.6e-31 139.0 133 56.4
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 3.4e-31 138.7 140 53.6
THA.LOC104808654 Tarenaya hassleriana HOM05D006937 ORTHO05D008747 3.4e-31 138.7 140 54.3
CBR_g48697 Chara braunii HOM05D006937 ORTHO05D008747 5.8e-31 137.9 136 51.5
BcaC06g35132 Brassica carinata HOM05D006937 ORTHO05D008747 9.8e-31 137.1 140 52.9
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 9.8e-31 137.1 140 52.9
Sp6g00050 Schrenkiella parvula HOM05D006937 ORTHO05D008747 9.8e-31 137.1 140 52.9
AT1G26660 Arabidopsis thaliana HOM05D006937 ORTHO05D008747 1.3e-30 136.7 140 52.9
Pp3c21_19110 Physcomitrium patens HOM05D006937 ORTHO05D008747 1.7e-30 136.3 137 51.8
Aa31LG7G8430 Aethionema arabicum HOM05D006937 ORTHO05D008747 2.2e-30 136.0 140 52.1
Thhalv10008997m.g Eutrema salsugineum HOM05D006937 ORTHO05D008747 2.2e-30 136.0 140 52.9
Sabra08G0068400 Salix brachista HOM05D006937 ORTHO05D008747 2.2e-30 136.0 107 63.6
arahy.Tifrunner.gnm1.ann1.J4SELD Arachis hypogaea HOM05D006937 ORTHO05D008747 2.9e-30 135.6 96 67.7
BcaB03g14081 Brassica carinata HOM05D006937 ORTHO05D008747 2.9e-30 135.6 140 52.1
Carub.0001s2437 Capsella rubella HOM05D006937 ORTHO05D008747 2.9e-30 135.6 140 52.9
Ah.02g130690 Amaranthus hybridus HOM05D006937 ORTHO05D008747 4.9e-30 134.8 130 56.2
BcaB05g21932 Brassica carinata HOM05D006937 ORTHO05D008747 1.1e-29 133.7 140 50.7
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 2.4e-29 132.5 140 51.4
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 2.4e-29 132.5 140 51.4
PSO357G0488 Papaver somniferum HOM05D006937 ORTHO05D008747 9.5e-26 120.6 70 85.7
ClCG09G001850 Citrullus lanatus HOM05D006937 ORTHO05D008747 1.2e-23 113.6 67 82.1
arahy.Tifrunner.gnm1.ann1.K4YSPN Arachis hypogaea HOM05D006937 ORTHO05D008747 3.5e-20 102.1 65 72.3
SalBow8G3842 Salvia bowleyana HOM05D006937 ORTHO05D008747 1.5e-18 96.7 72 58.3
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 5.8e-15 84.7 61 65.6
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 6.2e-09 64.7 75 48.0
Sabra10G0124400 Salix brachista HOM05D006937 ORTHO05D008747 2.6e-07 59.3 135 32.6
Cc00_g19610 Coffea canephora HOM05D000421 ORTHO05D013979 1.7e-06 56.6 42 66.7
Cc08_g04320 Coffea canephora HOM05D006937 ORTHO05D013979 1.7e-06 56.6 42 66.7
PRCOL_00006274 Prasinoderma coloniale HOM05D006937 ORTHO05D008747 2.2e-06 56.2 136 32.4


User provided reference genes

Program Settings