Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G4951 Papaver somniferum HOM05D004683 ORTHO05D005388 6.2e-228 793.9 430 100.0
PSO675G6369 Papaver somniferum HOM05D004683 ORTHO05D005388 6.2e-220 767.3 430 96.5
TAR626G1909 Trochodendron aralioides HOM05D004683 ORTHO05D005388 9.2e-123 444.5 435 62.8
Nn1g07478 Nelumbo nucifera HOM05D004683 ORTHO05D005388 3.9e-121 439.1 435 63.0
Aqoxy4G02236 Aquilegia oxysepala HOM05D004683 ORTHO05D005388 2.2e-108 396.7 436 57.1
MBI19_g44082_MAGBIO Magnolia biondii HOM05D004683 ORTHO05D005388 2.8e-103 379.8 442 54.3
CSS0016540 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 9.0e-102 374.8 418 56.9
GSVIVG01007216001 Vitis vinifera HOM05D004683 ORTHO05D005388 4.6e-98 362.5 350 60.6
Actinidia11898 Actinidia chinensis HOM05D004683 ORTHO05D005388 4.8e-95 352.4 437 54.0
Sed0018998 Sechium edule HOM05D004683 ORTHO05D005388 3.1e-94 349.7 428 55.8
ClCG01G010700 Citrullus lanatus HOM05D004683 ORTHO05D005388 9.0e-94 348.2 428 57.0
Dinv04407 Davidia involucrata HOM05D004683 ORTHO05D005388 3.4e-93 346.3 363 62.0
Cfa000066 Carpinus fangiana HOM05D004683 ORTHO05D005388 1.7e-92 344.0 440 52.7
CsaV3_UNG061480 Cucumis sativus L. HOM05D004683 ORTHO05D005388 6.5e-92 342.0 427 55.7
MELO3C025532.2 Cucumis melo HOM05D004683 ORTHO05D005388 8.4e-92 341.7 438 55.7
Actinidia39280 Actinidia chinensis HOM05D004683 ORTHO05D005388 2.5e-91 340.1 437 53.3
Manes.09G081701 Manihot esculenta HOM05D004683 ORTHO05D005388 7.1e-91 338.6 398 56.0
Duzib160G0680 Durio zibethinus HOM05D004683 ORTHO05D005388 1.6e-90 337.4 406 53.2
CANSAT56G4109 Cannabis sativa HOM05D004683 ORTHO05D005388 2.3e-89 333.6 437 53.3
MD10G1336700 Malus domestica HOM05D004683 ORTHO05D005388 1.3e-87 327.8 435 52.4
CsaV3_1G015800 Cucumis sativus L. HOM05D004683 ORTHO05D005388 2.1e-87 327.0 371 58.8
Potri.006G017200 Populus trichocarpa HOM05D004683 ORTHO05D005388 8.2e-87 325.1 423 52.5
Solyc11g012610.2 Solanum lycopersicum HOM05D004683 ORTHO05D005388 1.4e-86 324.3 445 51.2
Hma1.2p1_0657F.1_g196900 Hydrangea macrophylla HOM05D004683 ORTHO05D005388 2.4e-86 323.6 438 51.8
CiPaw.09G105900 Carya illinoinensis HOM05D004683 ORTHO05D005388 4.0e-86 322.8 444 52.3
CSS0018655 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.3e-86 322.4 398 54.8
Prupe.4G006700 Prunus persica HOM05D004683 ORTHO05D005388 6.9e-86 322.0 437 51.0
Nitab4.5_0001668g0040 Nicotiana tabacum HOM05D004683 ORTHO05D005388 9.0e-86 321.6 441 49.9
PGSC0003DMG400013358 Solanum tuberosum HOM05D004683 ORTHO05D005388 1.2e-85 321.2 447 50.6
Duzib235G0361 Durio zibethinus HOM05D004683 ORTHO05D005388 1.5e-85 320.9 405 51.6
Sabra06G0012200 Salix brachista HOM05D004683 ORTHO05D005388 2.0e-85 320.5 422 52.8
Potri.016G008400 Populus trichocarpa HOM05D004683 ORTHO05D005388 1.0e-84 318.2 426 51.9
CAN.G696.10 Capsicum annuum HOM05D004683 ORTHO05D005388 2.2e-84 317.0 449 49.2
RcHm_v2.0_Chr5g0000761 Rosa chinensis HOM05D004683 ORTHO05D005388 2.2e-84 317.0 433 51.5
Atru.chr1.2335 Acer truncatum HOM05D004683 ORTHO05D005388 8.4e-84 315.1 322 60.6
Peaxi162Scf00352g01036 Petunia axillaris HOM05D004683 ORTHO05D005388 7.1e-83 312.0 435 50.3
PGR004G0928 Punica granatum HOM05D004683 ORTHO05D005388 2.7e-82 310.1 442 48.2
Cc09_g00590 Coffea canephora HOM05D004683 ORTHO05D005388 7.4e-80 302.0 358 53.6
Lj2A259T33 Lonicera japonica HOM05D004683 ORTHO05D005388 9.7e-80 301.6 434 49.5
Phvul.006G141000 Phaseolus vulgaris HOM05D004683 ORTHO05D005388 2.8e-79 300.1 427 50.8
CSS0042800 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.8e-79 299.3 328 59.1
FvH4_3g00551 Fragaria vesca HOM05D004683 ORTHO05D005388 8.2e-79 298.5 436 49.8
COL.COLO4_15259 Corchorus olitorius HOM05D004683 ORTHO05D005388 2.4e-78 297.0 425 49.2
Lj6g0001835 Lotus japonicus HOM05D004683 ORTHO05D005388 2.4e-78 297.0 428 49.5
FAN25G2373 Fragaria x ananassa HOM05D004683 ORTHO05D005388 4.1e-78 296.2 436 49.8
Thecc.06G237400 Theobroma cacao HOM05D004683 ORTHO05D005388 6.9e-78 295.4 419 48.0
Peaxi162Scf01544g00025 Petunia axillaris HOM05D004683 ORTHO05D005388 1.5e-77 294.3 340 54.1
Gorai.011G008800 Gossypium raimondii HOM05D004683 ORTHO05D005388 3.4e-77 293.1 368 53.3
DCAR_030854 Daucus carota HOM05D004683 ORTHO05D005388 4.5e-77 292.7 426 46.9
Gohir.A10G008300 Gossypium hirsutum HOM05D004683 ORTHO05D005388 4.5e-77 292.7 362 53.0
CDE04G2289 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 1.0e-76 291.6 339 52.8
Sabra16G0012800 Salix brachista HOM05D004683 ORTHO05D005388 1.0e-76 291.6 444 49.5
Gohir.D10G008100 Gossypium hirsutum HOM05D004683 ORTHO05D005388 2.2e-76 290.4 368 53.3
THA.LOC104806735 Tarenaya hassleriana HOM05D004683 ORTHO05D005388 3.8e-76 289.7 426 47.7
MD00G1058000 Malus domestica HOM05D004683 ORTHO05D005388 1.6e-74 284.3 435 48.3
Oeu052851.1 Olea europaea HOM05D004683 ORTHO05D005388 2.7e-74 283.5 350 54.9
QL05p068304 Quercus lobata HOM05D004683 ORTHO05D005388 6.1e-74 282.3 443 46.3
Gorai.010G188900 Gossypium raimondii HOM05D004683 ORTHO05D005388 1.8e-73 280.8 382 52.4
QL05p068796 Quercus lobata HOM05D004683 ORTHO05D005388 3.0e-73 280.0 435 45.7
Oeu052866.1 Olea europaea HOM05D004683 ORTHO05D005388 6.7e-73 278.9 370 51.9
Gohir.D06G161900 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.5e-72 277.7 382 51.3
Lalb_Chr15g0088101 Lupinus albus HOM05D004683 ORTHO05D005388 3.3e-72 276.6 354 51.7
Nitab4.5_0004646g0030 Nicotiana tabacum HOM05D004683 ORTHO05D005388 3.3e-72 276.6 432 45.8
Gohir.A06G155500 Gossypium hirsutum HOM05D004683 ORTHO05D005388 4.3e-72 276.2 424 49.1
Haze_06980 Corylus avellana HOM05D004683 ORTHO05D005388 5.7e-72 275.8 429 47.8
Medtr2g026550 Medicago truncatula HOM05D004683 ORTHO05D005388 3.7e-71 273.1 428 48.6
PGSC0003DMG400023555 Solanum tuberosum HOM05D004683 ORTHO05D005388 1.1e-70 271.6 443 44.7
TWI38G0781 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 1.1e-70 271.6 435 45.5
ATR0624G003 Amborella trichopoda HOM05D004683 ORTHO05D005388 2.4e-70 270.4 370 50.3
arahy.Tifrunner.gnm1.ann1.L4TARN Arachis hypogaea HOM05D004683 ORTHO05D005388 1.2e-69 268.1 437 46.0
Lsat_1_v5_gn_7_14120 Lactuca sativa HOM05D004683 ORTHO05D005388 1.5e-69 267.7 419 48.9
SalBow8G0627 Salvia bowleyana HOM05D004683 ORTHO05D005388 3.4e-69 266.5 436 45.6
TAR341G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 1.0e-68 265.0 280 62.9
TAR485G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 1.0e-68 265.0 280 62.9
arahy.Tifrunner.gnm1.ann1.5M71YA Arachis hypogaea HOM05D004683 ORTHO05D005388 1.3e-68 264.6 437 45.8
Rhsim02G0091200 Rhododendron simsii HOM05D004683 ORTHO05D005388 8.5e-68 261.9 430 46.5
Eucgr.D01443 Eucalyptus grandis HOM05D004683 ORTHO05D005388 3.2e-67 260.0 404 47.0
Sc05g0009730 Simmondsia chinensis HOM05D004683 ORTHO05D005388 5.5e-67 259.2 374 47.1
Lsat_1_v5_gn_0_24381 Lactuca sativa HOM05D004683 ORTHO05D005388 2.1e-66 257.3 397 46.3
TWI63G0041 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 7.9e-66 255.4 429 46.4
Oeu030103.1 Olea europaea HOM05D004683 ORTHO05D005388 1.4e-65 254.6 392 46.4
SGA_v2.0_scaffold7G03714 Striga asiatica HOM05D004683 ORTHO05D005388 1.8e-65 254.2 349 50.1
HanXRQChr15g0470281 Helianthus annuus HOM05D004683 ORTHO05D005388 2.3e-65 253.8 374 50.5
AUR62012829 Chenopodium quinoa HOM05D004683 ORTHO05D005388 1.5e-64 251.1 406 44.3
CDE06G0298 Ceratophyllum demersum HOM05D000165 ORTHO05D005388 2.0e-64 250.8 297 52.5
AUR62021828 Chenopodium quinoa HOM05D004683 ORTHO05D005388 3.3e-64 250.0 406 45.1
TPR.G10575 Trifolium pratense HOM05D004683 ORTHO05D005388 3.3e-64 250.0 426 46.0
vmacro15736 Vaccinium macrocarpon HOM05D004683 ORTHO05D005388 1.3e-63 248.1 397 47.1
Hund21139 Selenicereus undatus HOM05D004683 ORTHO05D005388 3.1e-62 243.4 403 44.7
Psat1g173720 Pisum sativum HOM05D004683 ORTHO05D005388 4.1e-62 243.0 430 44.4
Sopen04g006980 Solanum pennellii HOM05D004683 ORTHO05D005388 2.2e-60 237.3 438 41.6
Glyma.15G117000 Glycine max HOM05D004683 ORTHO05D005388 2.9e-60 236.9 431 42.9
Ah.14g087460 Amaranthus hybridus HOM05D004683 ORTHO05D005388 5.0e-60 236.1 443 42.7
HPP92_014031 Vanilla planifolia HOM05D004683 ORTHO05D005388 1.1e-59 235.0 425 41.2
Solyc04g014850.3 Solanum lycopersicum HOM05D004683 ORTHO05D005388 5.5e-59 232.6 438 41.6
Ca_00746_v3 Cicer arietinum L. HOM05D004683 ORTHO05D005388 2.1e-58 230.7 332 50.0
EL10Ac8g20240 Beta vulgaris HOM05D004683 ORTHO05D005388 1.8e-57 227.6 415 41.7
Migut.M01430 Erythranthe guttata HOM05D004683 ORTHO05D005388 1.8e-57 227.6 397 45.1
Aa31LG6G60 Aethionema arabicum HOM05D004683 ORTHO05D005388 2.3e-57 227.3 363 46.0
HPP92_028363 Vanilla planifolia HOM05D004683 ORTHO05D005388 2.0e-56 224.2 451 39.7
Cpa.g.sc27.252 Carica papaya HOM05D004683 ORTHO05D005388 4.4e-56 223.0 310 54.5
Glyma.09G012400 Glycine max HOM05D004683 ORTHO05D005388 4.4e-56 223.0 432 42.4
VMungo0540G0168 Vigna mungo HOM05D004683 ORTHO05D005388 7.4e-56 222.2 428 42.8
Carub.0007s2417 Capsella rubella HOM05D004683 ORTHO05D005388 2.4e-54 217.2 373 46.1
Sabra16G0012500 Salix brachista HOM05D004683 ORTHO05D005388 4.1e-54 216.5 271 55.0
CARHR223850 Cardamine hirsuta HOM05D004683 ORTHO05D005388 2.0e-53 214.2 361 46.0
AL7G37470 Arabidopsis lyrata HOM05D004683 ORTHO05D005388 5.0e-52 209.5 359 46.2
Thhalv10025641m.g Eutrema salsugineum HOM05D004683 ORTHO05D005388 6.5e-52 209.1 409 43.3
MSTRG.7144 Avicennia marina HOM05D004683 ORTHO05D005388 1.1e-51 208.4 265 52.1
AT4G17240 Arabidopsis thaliana HOM05D004683 ORTHO05D005388 1.5e-51 208.0 412 43.2
SEGI_35929 Sequoiadendron giganteum HOM05D004683 ORTHO05D005388 2.3e-49 200.7 398 41.0
Sp7g16950 Schrenkiella parvula HOM05D004683 ORTHO05D005388 8.8e-49 198.7 402 42.8
BolC1t02477H Brassica oleracea HOM05D004683 ORTHO05D005388 2.6e-48 197.2 404 42.3
Nitab4.5_0001109g0120 Nicotiana tabacum HOM05D004683 ORTHO05D005388 3.4e-48 196.8 434 38.7
PSO339G0967 Papaver somniferum HOM05D004683 ORTHO05D005388 5.7e-48 196.1 105 95.2
BcaC09g50454 Brassica carinata HOM05D004683 ORTHO05D005388 9.8e-48 195.3 404 42.1
C01p25270 Brassica napus HOM05D004683 ORTHO05D005388 9.8e-48 195.3 404 42.1
unitig_37.g12183 Utricularia gibba HOM05D004683 ORTHO05D005388 8.3e-47 192.2 225 52.0
BraA01t01938Z Brassica rapa HOM05D004683 ORTHO05D005388 1.1e-46 191.8 346 44.5
A01p20140 Brassica napus HOM05D004683 ORTHO05D005388 2.4e-46 190.7 406 42.4
Ah.09g234040 Amaranthus hybridus HOM05D004683 ORTHO05D005388 3.5e-45 186.8 443 39.1
Ciclev10017876m.g Citrus clementina HOM05D004683 ORTHO05D005388 7.7e-45 185.7 422 40.5
Sopen11g007340 Solanum pennellii HOM05D004683 ORTHO05D005388 2.1e-42 177.6 201 53.7
CAN.G1263.24 Capsicum annuum HOM05D004683 ORTHO05D005388 5.2e-41 172.9 388 38.7
Zm00001eb214850 Zea mays HOM05D004683 ORTHO05D005388 2.4e-38 164.1 393 37.4
Zm00001eb057420 Zea mays HOM05D004683 ORTHO05D005388 7.0e-38 162.5 395 38.5
CSS0001859 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.2e-34 151.8 208 52.9
CSS0027604 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.2e-34 151.8 208 52.9
CSS0022133 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.5e-32 144.8 220 49.5
ECA246G4668 Erigeron canadensis HOM05D004683 ORTHO05D005388 5.7e-32 142.9 286 39.2
BcaNung00108 Brassica carinata HOM05D004683 ORTHO05D005388 4.1e-30 136.7 251 43.8
CDE04G1899 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 7.0e-30 136.0 392 36.0
CDE07G1645 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 1.0e-28 132.1 311 38.3
MSTRG.16041 Avicennia marina HOM05D004683 ORTHO05D005388 1.9e-27 127.9 204 46.1
Os03g0750900 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 2.0e-24 117.9 220 43.2
CSS0011389 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.6e-24 117.5 138 50.7
MSTRG.14824 Avicennia marina HOM05D004683 ORTHO05D005388 2.2e-23 114.4 107 64.5
Sopen00g010710 Solanum pennellii HOM05D004683 ORTHO05D005388 5.4e-22 109.8 232 42.7
CSS0042721 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.5e-21 107.1 208 42.3
CSS0009085 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 6.0e-21 106.3 194 43.8
CSS0022243 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 6.0e-21 106.3 208 42.3
CSS0004114 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.3e-20 104.4 208 41.8
CSS0049827 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.3e-20 104.4 208 41.8
CSS0017523 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 6.6e-20 102.8 208 41.3
SMO351G0434 Selaginella moellendorffii HOM05D025386 ORTHO05D005388 1.7e-15 88.2 166 38.6
COL.COLO4_30227 Corchorus olitorius HOM05D001156 ORTHO05D001006 3.2e-14 84.0 103 54.4
CSS0019011 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 7.1e-14 82.8 208 37.5
Os05g0547100 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 6.6e-12 76.3 190 36.8
A09p40660 Brassica napus HOM05D004683 ORTHO05D005388 4.3e-11 73.6 71 62.0
AagrBONN_evm.TU.Sc2ySwM_117.2428 Anthoceros agrestis HOM05D025386 ORTHO05D026614 4.9e-07 60.1 169 28.4
FAN11G0338 Fragaria x ananassa HOM05D004683 ORTHO05D035386 1.4e-06 58.5 75 54.7
Sabra19G0093600 Salix brachista HOM05D000057 ORTHO05D005388 5.4e-06 56.6 78 50.0


User provided reference genes

Program Settings