Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G4932 Papaver somniferum HOM05D005647 ORTHO05D006968 0.0e+00 1335.5 677 100.0
PSO675G6613 Papaver somniferum HOM05D005647 ORTHO05D006968 0.0e+00 1161.7 677 88.6
PSO447G0260 Papaver somniferum HOM05D005647 ORTHO05D006968 0.0e+00 1132.5 682 86.4
TAR623G0344 Trochodendron aralioides HOM05D005647 ORTHO05D006968 1.3e-152 544.3 707 47.8
GSVIVG01025064001 Vitis vinifera HOM05D005647 ORTHO05D006968 1.7e-139 500.7 710 45.6
Rhsim01G0223800 Rhododendron simsii HOM05D005647 ORTHO05D006968 3.5e-132 476.5 704 43.8
MBI14_g34527_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 8.5e-131 471.9 589 49.7
Ciclev10027867m.g Citrus clementina HOM05D005647 ORTHO05D006968 5.2e-128 462.6 338 67.8
Actinidia00810 Actinidia chinensis HOM05D005647 ORTHO05D006968 5.7e-127 459.1 699 43.6
QL03p069904 Quercus lobata HOM05D005647 ORTHO05D006968 1.3e-126 458.0 702 43.3
Lj1A178T39 Lonicera japonica HOM05D005647 ORTHO05D006968 8.2e-126 455.3 461 53.6
CiPaw.13G102300 Carya illinoinensis HOM05D005647 ORTHO05D006968 2.4e-125 453.8 338 67.8
CANSAT54G2414 Cannabis sativa HOM05D005647 ORTHO05D006968 3.1e-125 453.4 365 64.1
Aqoxy4G03106 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 4.1e-125 453.0 375 62.4
Cfa011418 Carpinus fangiana HOM05D005647 ORTHO05D006968 1.5e-122 444.5 702 41.7
Atru.chr3.3782 Acer truncatum HOM05D005647 ORTHO05D006968 4.2e-122 443.0 512 49.8
MD11G1117900 Malus domestica HOM05D005647 ORTHO05D006968 8.0e-121 438.7 711 41.2
Potri.009G025800 Populus trichocarpa HOM05D005647 ORTHO05D006968 1.0e-120 438.3 751 40.5
Gohir.A05G099200 Gossypium hirsutum HOM05D005647 ORTHO05D006968 1.4e-120 438.0 404 56.2
Gorai.009G103000 Gossypium raimondii HOM05D005647 ORTHO05D006968 4.0e-120 436.4 404 56.2
COL.COLO4_18417 Corchorus olitorius HOM05D005647 ORTHO05D006968 5.2e-120 436.0 384 59.4
Gohir.D05G099100 Gossypium hirsutum HOM05D005647 ORTHO05D006968 1.5e-119 434.5 404 55.9
TWI75G1819 Tripterygium wilfordii HOM05D005647 ORTHO05D006968 2.0e-119 434.1 411 55.0
Nitab4.5_0000022g0330 Nicotiana tabacum HOM05D005647 ORTHO05D006968 2.6e-119 433.7 344 63.4
Thecc.09G331200 Theobroma cacao HOM05D005647 ORTHO05D006968 2.6e-119 433.7 404 56.4
Solyc06g005200.3 Solanum lycopersicum HOM05D005647 ORTHO05D006968 4.4e-119 433.0 391 57.8
Hund18946 Selenicereus undatus HOM05D005647 ORTHO05D006968 5.7e-119 432.6 687 42.4
Nitab4.5_0008854g0020 Nicotiana tabacum HOM05D005647 ORTHO05D006968 7.5e-119 432.2 340 63.5
Sopen06g001190 Solanum pennellii HOM05D005647 ORTHO05D006968 1.3e-118 431.4 483 49.9
Duzib150G0770 Durio zibethinus HOM05D005647 ORTHO05D006968 2.8e-118 430.3 477 51.4
Lsat_1_v5_gn_5_167021 Lactuca sativa HOM05D005647 ORTHO05D006968 2.8e-118 430.3 360 61.9
Ah.15g096320 Amaranthus hybridus HOM05D005647 ORTHO05D006968 6.3e-118 429.1 375 58.7
Sc14g0000850 Simmondsia chinensis HOM05D005647 ORTHO05D006968 1.4e-117 427.9 340 63.2
Manes.04G028600 Manihot esculenta HOM05D005647 ORTHO05D006968 1.8e-117 427.6 433 54.5
RcHm_v2.0_Chr5g0062191 Rosa chinensis HOM05D005647 ORTHO05D006968 1.8e-117 427.6 453 55.0
EL10Ac7g15937 Beta vulgaris HOM05D005647 ORTHO05D006968 7.0e-117 425.6 462 51.7
RcHm_v2.0_Chr4g0385531 Rosa chinensis HOM05D005647 ORTHO05D006968 7.0e-117 425.6 421 57.0
HanXRQChr14g0429211 Helianthus annuus HOM05D005647 ORTHO05D006968 9.1e-117 425.2 370 58.6
PGSC0003DMG400033668 Solanum tuberosum HOM05D005647 ORTHO05D006968 9.1e-117 425.2 391 57.0
Haze_23998 Corylus avellana HOM05D005647 ORTHO05D006968 4.5e-116 422.9 335 65.1
Aqoxy4G03104_Aqoxy4G03103 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 1.3e-115 421.4 342 63.2
ECA248G2619 Erigeron canadensis HOM05D005647 ORTHO05D006968 2.2e-115 420.6 360 59.7
FAN11G0841 Fragaria x ananassa HOM05D005647 ORTHO05D006968 6.5e-115 419.1 433 54.0
FAN25G1201 Fragaria x ananassa HOM05D005647 ORTHO05D006968 8.5e-115 418.7 448 53.1
Cc01_g12040 Coffea canephora HOM05D005647 ORTHO05D006968 1.1e-114 418.3 697 39.6
FvH4_3g34550 Fragaria vesca HOM05D005647 ORTHO05D006968 1.5e-114 417.9 433 54.0
FAN21G3075 Fragaria x ananassa HOM05D005647 ORTHO05D006968 1.5e-114 417.9 448 52.9
DCAR_005295 Daucus carota HOM05D005647 ORTHO05D006968 5.5e-114 416.0 432 54.9
FAN16G2614 Fragaria x ananassa HOM05D005647 ORTHO05D006968 7.2e-114 415.6 705 41.3
CDE08G0081 Ceratophyllum demersum HOM05D005647 ORTHO05D006968 1.2e-113 414.8 463 51.2
Glyma.13G196800 Glycine max HOM05D005647 ORTHO05D006968 1.0e-112 411.8 342 61.1
TPR.G17867 Trifolium pratense HOM05D005647 ORTHO05D006968 1.2e-111 408.3 385 56.4
AT5G59980 Arabidopsis thaliana HOM05D005647 ORTHO05D006968 1.5e-111 407.9 415 52.8
Ca_01361_v3 Cicer arietinum L. HOM05D005647 ORTHO05D006968 1.5e-111 407.9 561 44.9
ATR0787G117 Amborella trichopoda HOM05D005647 ORTHO05D006968 3.4e-111 406.8 307 64.8
AL8G36550 Arabidopsis lyrata HOM05D005647 ORTHO05D006968 4.4e-111 406.4 342 59.9
Actinidia03769 Actinidia chinensis HOM05D005647 ORTHO05D006968 5.7e-111 406.0 674 42.3
Lj3g0017565 Lotus japonicus HOM05D005647 ORTHO05D006968 7.5e-111 405.6 672 40.0
MSTRG.21166 Avicennia marina HOM05D005647 ORTHO05D006968 1.7e-110 404.4 449 51.2
Eucgr.A02758 Eucalyptus grandis HOM05D005647 ORTHO05D006968 3.7e-110 403.3 706 39.5
AUR62001855 Chenopodium quinoa HOM05D005647 ORTHO05D006968 4.8e-110 402.9 338 60.9
ClCG02G020580 Citrullus lanatus HOM05D005647 ORTHO05D006968 4.8e-110 402.9 352 57.7
CDE02G4018 Ceratophyllum demersum HOM05D005647 ORTHO05D006968 8.3e-110 402.1 408 53.2
Sed0021109 Sechium edule HOM05D005647 ORTHO05D006968 8.3e-110 402.1 735 38.4
Carub.0004s0912 Capsella rubella HOM05D005647 ORTHO05D006968 1.1e-109 401.7 342 59.6
VMungo1080G1709 Vigna mungo HOM05D005647 ORTHO05D006968 1.8e-109 401.0 342 59.9
PGR119G0370 Punica granatum HOM05D005647 ORTHO05D006968 5.4e-109 399.4 335 60.3
TPR.G11621 Trifolium pratense HOM05D005647 ORTHO05D006968 1.2e-108 398.3 339 60.8
vmacro14498 Vaccinium macrocarpon HOM05D005647 ORTHO05D006968 3.5e-108 396.7 705 40.3
Psat5g282040 Pisum sativum HOM05D005647 ORTHO05D006968 1.7e-107 394.4 395 52.7
Lalb_Chr24g0394311 Lupinus albus HOM05D005647 ORTHO05D006968 2.3e-107 394.0 343 58.0
Medtr2g096090 Medicago truncatula HOM05D005647 ORTHO05D006968 2.9e-107 393.7 428 49.5
Sabra09G0017200 Salix brachista HOM05D005647 ORTHO05D000187 6.6e-107 392.5 748 39.0
SGA_v2.0_scaffold61G21232 Striga asiatica HOM05D005647 ORTHO05D006968 2.5e-106 390.6 342 56.7
Aa31LG1G12110 Aethionema arabicum HOM05D005647 ORTHO05D006968 4.2e-106 389.8 344 59.3
CAN.G200.2 Capsicum annuum HOM05D005647 ORTHO05D006968 4.2e-106 389.8 306 63.1
Migut.D02155 Erythranthe guttata HOM05D005647 ORTHO05D006968 1.2e-105 388.3 404 51.5
MELO3C025708.2 Cucumis melo HOM05D005647 ORTHO05D006968 1.6e-105 387.9 385 52.2
Phvul.L002619 Phaseolus vulgaris HOM05D005647 ORTHO05D006968 6.1e-105 386.0 412 51.2
Prupe.6G088000 Prunus persica HOM05D005647 ORTHO05D006968 1.8e-104 384.4 653 40.0
Cpa.g.sc139.4 Carica papaya HOM05D005647 ORTHO05D006968 2.3e-104 384.0 704 37.9
Peaxi162Scf00006g01310 Petunia axillaris HOM05D005647 ORTHO05D006968 2.6e-103 380.6 416 52.2
Oeu058515.3 Olea europaea HOM05D005647 ORTHO05D006968 1.3e-102 378.3 822 35.9
Thhalv10012856m.g Eutrema salsugineum HOM05D005647 ORTHO05D006968 3.7e-102 376.7 710 38.3
THA.LOC104809599 Tarenaya hassleriana HOM05D005647 ORTHO05D006968 7.0e-101 372.5 339 56.0
BolC2t07297H Brassica oleracea HOM05D005647 ORTHO05D006968 9.2e-101 372.1 349 56.2
BcaB05g22600 Brassica carinata HOM05D005647 ORTHO05D006968 1.2e-100 371.7 348 57.2
Aa31LG5G21920 Aethionema arabicum HOM05D005647 ORTHO05D006968 1.3e-99 368.2 311 59.8
SalBow3G2669 Salvia bowleyana HOM05D005647 ORTHO05D006968 2.3e-99 367.5 372 51.6
SalBow3G1239 Salvia bowleyana HOM05D005647 ORTHO05D006968 2.9e-99 367.1 372 51.6
BcaB08g36205 Brassica carinata HOM05D005647 ORTHO05D006968 1.5e-98 364.8 376 53.2
BcaC04g19653 Brassica carinata HOM05D005647 ORTHO05D006968 1.5e-98 364.8 352 54.3
BolC9t58115H Brassica oleracea HOM05D005647 ORTHO05D006968 1.5e-98 364.8 352 54.3
C02p11970 Brassica napus HOM05D005647 ORTHO05D006968 2.5e-98 364.0 712 38.1
BraA02t05750Z Brassica rapa HOM05D005647 ORTHO05D006968 2.5e-98 364.0 712 38.1
unitig_736.g22430 Utricularia gibba HOM05D005647 ORTHO05D006968 2.5e-98 364.0 575 39.3
C09p52480 Brassica napus HOM05D005647 ORTHO05D006968 4.3e-98 363.2 352 53.7
BraA10t43800Z Brassica rapa HOM05D005647 ORTHO05D006968 4.3e-98 363.2 352 53.7
A02p06680 Brassica napus HOM05D005647 ORTHO05D006968 6.1e-97 359.4 710 37.7
A10p17190 Brassica napus HOM05D005647 ORTHO05D006968 2.0e-95 354.4 350 53.1
arahy.Tifrunner.gnm1.ann1.7X2355 Arachis hypogaea HOM05D005647 ORTHO05D006968 5.8e-95 352.8 360 51.1
THA.LOC104813123 Tarenaya hassleriana HOM05D005647 ORTHO05D006968 2.2e-94 350.9 308 59.1
arahy.Tifrunner.gnm1.ann1.W04KXW Arachis hypogaea HOM05D005647 ORTHO05D006968 3.2e-93 347.1 360 50.3
Sp6g21650 Schrenkiella parvula HOM05D005647 ORTHO05D006968 1.2e-92 345.1 359 52.6
arahy.Tifrunner.gnm1.ann1.S4SLQI Arachis hypogaea HOM05D005647 ORTHO05D006968 1.5e-90 338.2 383 47.5
arahy.Tifrunner.gnm1.ann1.ZDAZ4C Arachis hypogaea HOM05D005647 ORTHO05D006968 1.4e-85 321.6 383 46.5
Nn2g13828 Nelumbo nucifera HOM05D005647 ORTHO05D006968 8.3e-78 295.8 205 74.1
Gorai.013G129300 Gossypium raimondii HOM05D005647 ORTHO05D006968 6.8e-72 276.2 239 61.5
AUR62009649 Chenopodium quinoa HOM05D005647 ORTHO05D006968 6.4e-70 269.6 239 58.6
Pp3c23_18130 Physcomitrium patens HOM05D005647 ORTHO05D006968 1.3e-67 261.9 290 45.9
VMungo1127G1784 Vigna mungo HOM05D005647 ORTHO05D006968 1.4e-64 251.9 204 59.3
Mapoly0041s0094 Marchantia polymorpha HOM05D005647 ORTHO05D006968 1.8e-64 251.5 358 40.8
SEGI_32841 Sequoiadendron giganteum HOM05D005647 ORTHO05D006968 2.9e-62 244.2 235 50.6
Os12g0175900 Oryza sativa ssp. japonica HOM05D005647 ORTHO05D006968 2.6e-55 221.1 292 41.1
Zm00001eb163100 Zea mays HOM05D005647 ORTHO05D006968 3.8e-54 217.2 375 36.5
Dinv32824 Davidia involucrata HOM05D005647 ORTHO05D006968 2.4e-48 198.0 471 36.3
CsaV3_6G022020 Cucumis sativus L. HOM05D005647 ORTHO05D006968 9.0e-48 196.1 365 38.9
Aqoxy4G01384 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 2.0e-39 168.3 113 71.7
MBI03_g45445_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 2.5e-37 161.4 122 67.2
VMungo1127G0608 Vigna mungo HOM05D005647 ORTHO05D006968 3.2e-37 161.0 145 57.9
Lsat_1_v5_gn_5_100621 Lactuca sativa HOM05D005647 ORTHO05D006968 2.5e-29 134.8 165 47.9
VMungo1127G1495 Vigna mungo HOM05D005647 ORTHO05D006968 8.8e-27 126.3 124 54.8
SMO348G0064 Selaginella moellendorffii HOM05D005647 ORTHO05D006968 8.2e-25 119.8 128 45.3
CARHR273620 Cardamine hirsuta HOM05D005647 ORTHO05D006968 5.3e-24 117.1 496 28.0
Cre02.g088050 Chlamydomonas reinhardtii HOM05D005647 ORTHO05D006968 3.4e-23 114.4 164 36.0
SEGI_06158 Sequoiadendron giganteum HOM05D005647 ORTHO05D006968 3.8e-22 110.9 106 54.7
EL10Ac9g22529 Beta vulgaris HOM05D005647 ORTHO05D006968 8.5e-22 109.8 86 64.0
MBI10_g46876_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 1.8e-19 102.1 82 61.0
QL03p025644 Quercus lobata HOM05D005647 ORTHO05D006968 4.8e-17 94.0 58 81.0
MCO02G042 Micromonas commoda HOM05D005647 ORTHO05D006968 5.3e-16 90.5 159 32.7
MBI14_g07932_MAGBIO Magnolia biondii HOM05D002922 ORTHO05D006968 1.3e-14 85.9 56 75.0
Gohir.D11G155700 Gossypium hirsutum HOM05D001229 ORTHO05D011852 2.3e-11 75.1 55 69.1
Gorai.007G165900 Gossypium raimondii HOM05D001229 ORTHO05D011852 2.3e-11 75.1 55 69.1


User provided reference genes

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