Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G4889 Papaver somniferum HOM05D004053 ORTHO05D005065 7.0e-251 870.2 445 100.0
PSO675G9209 Papaver somniferum HOM05D004053 ORTHO05D005065 6.7e-209 730.7 448 87.5
PSO832G4321 Papaver somniferum HOM05D004053 ORTHO05D005065 9.1e-174 614.0 447 77.4
TAR362G1031 Trochodendron aralioides HOM05D004053 ORTHO05D005065 9.0e-105 384.8 446 51.1
Nn4g26160 Nelumbo nucifera HOM05D004053 ORTHO05D005065 1.0e-95 354.8 450 49.1
QL12p022856 Quercus lobata HOM05D004053 ORTHO05D005065 1.5e-91 340.9 445 45.6
Cfa006097 Carpinus fangiana HOM05D004053 ORTHO05D005065 9.6e-91 338.2 448 46.7
Haze_04757 Corylus avellana HOM05D004053 ORTHO05D005065 1.6e-90 337.4 448 46.2
GSVIVG01011074001 Vitis vinifera HOM05D004053 ORTHO05D005065 2.6e-88 330.1 448 48.4
Ciclev10020315m.g Citrus clementina HOM05D004053 ORTHO05D005065 5.5e-86 322.4 451 44.3
Manes.01G210500 Manihot esculenta HOM05D004053 ORTHO05D005065 3.9e-84 316.2 450 45.1
FAN20G0349 Fragaria x ananassa HOM05D004053 ORTHO05D005065 3.1e-81 306.6 449 45.7
FAN24G1933 Fragaria x ananassa HOM05D004053 ORTHO05D005065 5.3e-81 305.8 449 45.2
RcHm_v2.0_Chr6g0291821 Rosa chinensis HOM05D004053 ORTHO05D005065 5.3e-81 305.8 449 45.0
CSS0023044 Camellia sinensis var. sinensis HOM05D004053 ORTHO05D005065 6.9e-81 305.4 451 44.6
FvH4_2g24050 Fragaria vesca HOM05D004053 ORTHO05D005065 1.2e-80 304.7 449 45.2
FAN15G3549 Fragaria x ananassa HOM05D004053 ORTHO05D005065 1.2e-80 304.7 448 44.9
Duzib133G0805 Durio zibethinus HOM05D004053 ORTHO05D005065 4.5e-80 302.8 452 43.6
Aqoxy5G00541 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 2.9e-79 300.1 452 44.5
Atru.chr5.1352 Acer truncatum HOM05D004053 ORTHO05D005065 1.1e-78 298.1 440 44.3
FAN27G0975 Fragaria x ananassa HOM05D004053 ORTHO05D005065 1.4e-78 297.7 449 45.0
Duzib138G0912 Durio zibethinus HOM05D004053 ORTHO05D005065 2.1e-77 293.9 453 41.7
Rhsim13G0022200 Rhododendron simsii HOM05D004053 ORTHO05D005065 7.9e-77 292.0 446 41.9
Aqoxy2G03230 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 1.8e-76 290.8 449 43.7
Cpa.g.sc9.119 Carica papaya HOM05D004053 ORTHO05D005065 3.9e-76 289.7 456 41.7
Lj1C43T4 Lonicera japonica HOM05D004053 ORTHO05D005065 2.0e-75 287.3 449 43.7
Hma1.2p1_0257F.1_g103830 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 5.7e-75 285.8 405 44.7
Prupe.8G245900 Prunus persica HOM05D004053 ORTHO05D005065 7.4e-75 285.4 453 42.4
CiPaw.07G095100 Carya illinoinensis HOM05D004053 ORTHO05D005065 9.7e-75 285.0 448 40.8
vmacro02546 Vaccinium macrocarpon HOM05D004053 ORTHO05D005065 1.3e-74 284.6 448 41.3
Thecc.01G284500 Theobroma cacao HOM05D004053 ORTHO05D005065 1.7e-74 284.3 453 42.4
Actinidia24316 Actinidia chinensis HOM05D004053 ORTHO05D005065 1.1e-73 281.6 452 41.4
Eucgr.K03405 Eucalyptus grandis HOM05D004053 ORTHO05D005065 5.3e-73 279.3 449 43.4
Potri.014G138200 Populus trichocarpa HOM05D004053 ORTHO05D005065 3.4e-72 276.6 450 41.1
CANSAT25G0924 Cannabis sativa HOM05D004053 ORTHO05D005065 1.3e-71 274.6 449 42.1
Gohir.A12G006400 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.7e-71 274.2 454 39.9
Nn1g02136 Nelumbo nucifera HOM05D004053 ORTHO05D005065 2.2e-71 273.9 404 44.8
Gohir.D12G005800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 2.9e-71 273.5 454 39.9
Potri.002G215800 Populus trichocarpa HOM05D004053 ORTHO05D005065 6.5e-71 272.3 452 40.7
Duzib211G0472 Durio zibethinus HOM05D004053 ORTHO05D005065 8.5e-71 271.9 381 44.9
Gorai.008G005800 Gossypium raimondii HOM05D004053 ORTHO05D005065 2.5e-70 270.4 454 39.6
PGR044G2575 Punica granatum HOM05D004053 ORTHO05D005065 1.2e-69 268.1 440 41.4
Lalb_Chr06g0163121 Lupinus albus HOM05D004053 ORTHO05D005065 1.6e-69 267.7 425 40.9
ECA248G2902 Erigeron canadensis HOM05D004053 ORTHO05D005065 2.1e-69 267.3 449 40.8
MD11G1290800 Malus domestica HOM05D004053 ORTHO05D005065 4.7e-69 266.2 446 40.6
HanXRQChr02g0046661 Helianthus annuus HOM05D004053 ORTHO05D005065 7.9e-69 265.4 450 40.0
Lj5g0001920 Lotus japonicus HOM05D004053 ORTHO05D005065 6.7e-68 262.3 433 38.8
Dinv11260 Davidia involucrata HOM05D004053 ORTHO05D005065 8.8e-68 261.9 371 47.4
MELO3C014420.2 Cucumis melo HOM05D004053 ORTHO05D005065 1.1e-67 261.5 451 38.1
CsaV3_6G036930 Cucumis sativus L. HOM05D004053 ORTHO05D005065 2.6e-67 260.4 451 38.1
Glyma.19G153300 Glycine max HOM05D004053 ORTHO05D005065 4.4e-67 259.6 451 38.4
HanXRQChr01g0002441 Helianthus annuus HOM05D004053 ORTHO05D005065 4.4e-67 259.6 450 40.2
ClCG07G000110 Citrullus lanatus HOM05D004053 ORTHO05D005065 1.7e-66 257.7 447 38.0
Lalb_Chr21g0306591 Lupinus albus HOM05D004053 ORTHO05D005065 1.7e-66 257.7 414 41.3
TWI14G1274 Tripterygium wilfordii HOM05D004053 ORTHO05D005065 4.8e-66 256.1 456 39.3
Glyma.03G150700 Glycine max HOM05D004053 ORTHO05D005065 1.4e-65 254.6 451 37.3
Lsat_1_v5_gn_5_187500 Lactuca sativa HOM05D004053 ORTHO05D005065 1.8e-65 254.2 457 38.9
Gorai.007G133800 Gossypium raimondii HOM05D004053 ORTHO05D005065 4.1e-65 253.1 451 38.6
Glyma.02G149700 Glycine max HOM05D004053 ORTHO05D005065 7.0e-65 252.3 430 41.4
Medtr1g089980 Medicago truncatula HOM05D004053 ORTHO05D005065 7.0e-65 252.3 453 38.6
Actinidia00729 Actinidia chinensis HOM05D004053 ORTHO05D005065 9.1e-65 251.9 275 51.3
Gohir.D11G124800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 2.0e-64 250.8 451 38.4
DCAR_005821 Daucus carota HOM05D004053 ORTHO05D005065 4.5e-64 249.6 451 40.4
Psat6g168840 Pisum sativum HOM05D004053 ORTHO05D005065 7.7e-64 248.8 450 39.1
Glyma.10G024200 Glycine max HOM05D004053 ORTHO05D005065 1.3e-63 248.1 427 40.7
Gohir.A11G120100 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.3e-63 248.1 457 37.6
Nitab4.5_0008204g0020 Nicotiana tabacum HOM05D004053 ORTHO05D005065 8.5e-63 245.4 450 39.8
Phvul.001G148300 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 1.5e-62 244.6 448 36.8
Ca_10403_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 1.9e-62 244.2 384 41.1
CiPaw.08G102900 Carya illinoinensis HOM05D004053 ORTHO05D005065 7.2e-62 242.3 362 44.8
MD03G1269800 Malus domestica HOM05D004053 ORTHO05D005065 3.6e-61 240.0 447 37.8
Lj2A1179G44 Lonicera japonica HOM05D004053 ORTHO05D005065 8.0e-61 238.8 275 49.1
Lj1g0006875 Lotus japonicus HOM05D004053 ORTHO05D005065 1.0e-60 238.4 462 37.2
VMungo0720G1290 Vigna mungo HOM05D004053 ORTHO05D005065 1.4e-60 238.0 403 40.9
Oeu011173.1 Olea europaea HOM05D004053 ORTHO05D005065 5.2e-60 236.1 456 38.4
arahy.Tifrunner.gnm1.ann1.V8R19R Arachis hypogaea HOM05D004053 ORTHO05D005065 6.7e-60 235.7 448 37.1
Sabra14G0104300 Salix brachista HOM05D004053 ORTHO05D005065 8.8e-60 235.3 477 35.4
Medtr7g094470 Medicago truncatula HOM05D004053 ORTHO05D005065 2.6e-59 233.8 447 36.7
arahy.Tifrunner.gnm1.ann1.K8THJN Arachis hypogaea HOM05D004053 ORTHO05D005065 1.3e-58 231.5 455 36.9
EL10Ac7g17207 Beta vulgaris HOM05D004053 ORTHO05D005065 1.3e-58 231.5 446 37.4
Sc05g0005080 Simmondsia chinensis HOM05D004053 ORTHO05D005065 2.2e-58 230.7 448 37.5
Ca_08561_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 3.7e-58 229.9 448 36.2
Ca_08595_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 3.7e-58 229.9 448 36.2
Nitab4.5_0001323g0010 Nicotiana tabacum HOM05D004053 ORTHO05D005065 1.1e-57 228.4 462 37.7
Psat3g065760 Pisum sativum HOM05D004053 ORTHO05D005065 3.1e-57 226.9 449 37.0
TPR.G32826 Trifolium pratense HOM05D004053 ORTHO05D005065 5.3e-57 226.1 425 37.9
arahy.Tifrunner.gnm1.ann1.U9BU7H Arachis hypogaea HOM05D004053 ORTHO05D005065 7.0e-57 225.7 264 49.2
PGSC0003DMG400003799 Solanum tuberosum HOM05D004053 ORTHO05D005065 1.2e-56 224.9 449 36.3
Cc01_g19820 Coffea canephora HOM05D004053 ORTHO05D005065 1.6e-56 224.6 386 40.7
MSTRG.21579 Avicennia marina HOM05D004053 ORTHO05D005065 4.5e-56 223.0 449 36.5
Phvul.007G169200 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 4.5e-56 223.0 403 38.2
Peaxi162Scf00777g00211 Petunia axillaris HOM05D004053 ORTHO05D005065 1.7e-55 221.1 450 37.6
VMungo1383G0556 Vigna mungo HOM05D004053 ORTHO05D005065 3.8e-55 219.9 447 34.9
DCAR_012450 Daucus carota HOM05D004053 ORTHO05D005065 5.0e-55 219.5 385 38.7
Sed0017907 Sechium edule HOM05D004053 ORTHO05D005065 6.5e-55 219.2 335 41.5
THA.LOC104815946 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 1.9e-54 217.6 415 38.6
Solyc09g072990.3 Solanum lycopersicum HOM05D004053 ORTHO05D005065 2.5e-54 217.2 449 35.2
CDE05G2296 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 5.5e-54 216.1 305 43.6
CDE11G0853 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 7.2e-54 215.7 291 44.3
Migut.D00258 Erythranthe guttata HOM05D004053 ORTHO05D005065 7.2e-54 215.7 449 36.3
Sopen09g028800 Solanum pennellii HOM05D004053 ORTHO05D005065 1.8e-52 211.1 449 34.7
Sp6g02950 Schrenkiella parvula HOM05D004053 ORTHO05D005065 3.4e-51 206.8 427 36.1
THA.LOC104801216 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 1.3e-50 204.9 417 37.2
Thhalv10028686m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 2.2e-50 204.1 428 37.1
A03p30730 Brassica napus HOM05D004053 ORTHO05D005065 1.1e-49 201.8 430 34.4
BraA03t12252Z Brassica rapa HOM05D004053 ORTHO05D005065 1.1e-49 201.8 426 35.2
CARHR251290 Cardamine hirsuta HOM05D004053 ORTHO05D005065 1.1e-49 201.8 431 36.0
C03p37430 Brassica napus HOM05D004053 ORTHO05D005065 3.1e-49 200.3 427 34.9
BolC3t16035H Brassica oleracea HOM05D004053 ORTHO05D005065 3.1e-49 200.3 427 34.9
AT4G02920 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 1.9e-46 191.0 438 34.0
AUR62036816 Chenopodium quinoa HOM05D004053 ORTHO05D005065 3.2e-46 190.3 440 35.5
Carub.0006s3417 Capsella rubella HOM05D004053 ORTHO05D005065 9.4e-46 188.7 428 35.0
AUR62033710 Chenopodium quinoa HOM05D004053 ORTHO05D005065 2.1e-45 187.6 451 34.1
BcaB01g02487 Brassica carinata HOM05D004053 ORTHO05D005065 1.4e-44 184.9 426 33.8
SGA_v2.0_scaffold1G00444 Striga asiatica HOM05D004053 ORTHO05D005065 2.0e-43 181.0 431 33.6
Aa31LG5G2500 Aethionema arabicum HOM05D004053 ORTHO05D005065 7.5e-43 179.1 415 33.3
Oeu041712.1 Olea europaea HOM05D004053 ORTHO05D005065 1.3e-42 178.3 181 57.5
SalBow6G4695 Salvia bowleyana HOM05D004053 ORTHO05D005065 1.8e-41 174.5 439 35.3
AL6G50010 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 1.2e-40 171.8 419 33.2
MBI17_g34956_MAGBIO Magnolia biondii HOM05D004053 ORTHO05D005065 7.7e-40 169.1 303 38.9
Zm00001eb417790 Zea mays HOM05D004053 ORTHO05D005065 1.5e-38 164.9 439 33.3
Carub.0001s0245 Capsella rubella HOM05D004053 ORTHO05D005065 3.3e-38 163.7 451 32.4
Sp1g02330 Schrenkiella parvula HOM05D004053 ORTHO05D005065 3.6e-37 160.2 263 38.4
TPR.G13395 Trifolium pratense HOM05D004053 ORTHO05D005065 7.5e-35 152.5 360 34.2
ATR0665G655 Amborella trichopoda HOM05D004053 ORTHO05D005065 2.2e-34 151.0 235 41.7
AL1G12850 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 2.9e-34 150.6 451 30.6
Os05g0143300 Oryza sativa ssp. japonica HOM05D004053 ORTHO05D005065 9.2e-33 145.6 280 34.3
AT1G03340 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 2.7e-32 144.1 385 31.9
Thhalv10007898m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 1.0e-31 142.1 275 35.3
arahy.Tifrunner.gnm1.ann1.F0KDF8 Arachis hypogaea HOM05D004053 ORTHO05D005065 1.3e-31 141.7 272 35.3
BcaC01g06723 Brassica carinata HOM05D004053 ORTHO05D005065 3.6e-29 133.7 174 44.3
BraA10t42462Z Brassica rapa HOM05D004053 ORTHO05D005065 4.4e-27 126.7 261 33.0
unitig_8.g3318 Utricularia gibba HOM05D004053 ORTHO05D005065 1.0e-23 115.5 276 32.6
BcaC05g24539 Brassica carinata HOM05D004053 ORTHO05D005065 1.9e-22 111.3 170 37.6
BolC2t09985H Brassica oleracea HOM05D004053 ORTHO05D005065 2.3e-20 104.4 144 41.7
C02p39720 Brassica napus HOM05D004053 ORTHO05D005065 4.0e-20 103.6 144 41.7
A10p01890 Brassica napus HOM05D004053 ORTHO05D005065 5.2e-20 103.2 171 35.7
A02p25050 Brassica napus HOM05D004053 ORTHO05D005065 1.2e-19 102.1 144 41.0
BraA02t07493Z Brassica rapa HOM05D004053 ORTHO05D005065 1.2e-19 102.1 144 41.0
BcaC03g16190 Brassica carinata HOM05D004053 ORTHO05D005065 3.4e-19 100.5 133 42.1
RcHm_v2.0_Chr6g0291831 Rosa chinensis HOM05D004053 ORTHO05D005065 5.8e-19 99.8 83 61.4
Hma1.2p1_4080F.1_g338240 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 2.2e-18 97.8 124 50.8
arahy.Tifrunner.gnm1.ann1.LMB138 Arachis hypogaea HOM05D004053 ORTHO05D005065 2.4e-09 67.8 52 71.2
BcaB04g19084 Brassica carinata HOM05D004053 ORTHO05D005065 9.2e-09 65.9 62 48.4
SEGI_15237 Sequoiadendron giganteum HOM05D004053 ORTHO05D005065 1.2e-08 65.5 171 30.4
Hma1.2p1_0377F.1_g139390 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 6.0e-08 63.2 56 55.4
BcaC01g06721 Brassica carinata HOM05D004053 ORTHO05D005065 1.3e-07 62.0 70 42.9
Psat1g163200 Pisum sativum HOM05D000871 ORTHO05D008698 1.7e-07 61.6 185 27.6
C08p10690 Brassica napus HOM05D004053 ORTHO05D031745 3.0e-07 60.8 74 41.9
BolC8t48741H Brassica oleracea HOM05D004053 ORTHO05D031745 3.0e-07 60.8 74 41.9
VMungo0540G1158 Vigna mungo HOM05D004053 ORTHO05D005065 5.1e-07 60.1 138 30.4
BcaC02g12834 Brassica carinata HOM05D004053 ORTHO05D005065 1.9e-06 58.2 65 46.2
C04p39350 Brassica napus HOM05D004053 ORTHO05D005065 1.9e-06 58.2 65 46.2
BolC4t25502H Brassica oleracea HOM05D004053 ORTHO05D005065 1.9e-06 58.2 65 46.2
BcaB06g27908 Brassica carinata HOM05D000021 ORTHO05D000010 3.3e-06 57.4 78 39.7
Eucgr.H01039 Eucalyptus grandis HOM05D005016 ORTHO05D005740 9.6e-06 55.8 70 47.1
Eucgr.H03488 Eucalyptus grandis HOM05D005016 ORTHO05D005740 9.6e-06 55.8 70 47.1


User provided reference genes

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