Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G4803 Papaver somniferum HOM05D004657 ORTHO05D005562 1.4e-182 643.3 434 100.0
PSO781G0272 Papaver somniferum HOM05D004657 ORTHO05D005562 4.3e-160 568.5 462 79.9
FAN28G0529 Fragaria x ananassa HOM05D004657 ORTHO05D005562 4.1e-94 349.4 253 69.2
DCAR_014230 Daucus carota HOM05D004657 ORTHO05D005562 7.0e-94 348.6 253 73.1
BolC3t20095H Brassica oleracea HOM05D004657 ORTHO05D005562 1.2e-93 347.8 253 70.0
MD15G1325300 Malus domestica HOM05D004657 ORTHO05D005562 1.2e-93 347.8 251 69.7
C03p78370 Brassica napus HOM05D004657 ORTHO05D005562 1.5e-93 347.4 253 70.0
BcaNung05325 Brassica carinata HOM05D004657 ORTHO05D005562 2.6e-93 346.7 253 70.0
Haze_24945 Corylus avellana HOM05D004657 ORTHO05D005562 4.5e-93 345.9 256 70.7
Prupe.6G184700 Prunus persica HOM05D004657 ORTHO05D005562 4.5e-93 345.9 446 54.5
FAN19G1231 Fragaria x ananassa HOM05D004657 ORTHO05D005562 5.9e-93 345.5 253 68.8
Thhalv10026765m.g Eutrema salsugineum HOM05D004657 ORTHO05D005562 1.0e-92 344.7 253 71.1
Cfa002676 Carpinus fangiana HOM05D004657 ORTHO05D005562 1.3e-92 344.4 256 69.9
A08p23310 Brassica napus HOM05D004657 ORTHO05D005562 2.9e-92 343.2 253 68.8
BraA08t34286Z Brassica rapa HOM05D004657 ORTHO05D005562 2.9e-92 343.2 253 68.8
AL7G12070 Arabidopsis lyrata HOM05D004657 ORTHO05D005562 3.8e-92 342.8 253 70.8
AT4G39840 Arabidopsis thaliana HOM05D004657 ORTHO05D005562 3.8e-92 342.8 253 70.8
Sp7g36050 Schrenkiella parvula HOM05D004657 ORTHO05D005562 3.8e-92 342.8 253 70.4
Eucgr.I00428 Eucalyptus grandis HOM05D004657 ORTHO05D005562 5.0e-92 342.4 253 69.2
CANSAT01G2418 Cannabis sativa HOM05D004657 ORTHO05D005562 6.5e-92 342.0 250 68.8
FAN26G2002 Fragaria x ananassa HOM05D004657 ORTHO05D005562 6.5e-92 342.0 253 68.0
TAR381G0611 Trochodendron aralioides HOM05D004657 ORTHO05D005562 6.5e-92 342.0 246 72.0
Aqoxy6G00812 Aquilegia oxysepala HOM05D004657 ORTHO05D005562 8.5e-92 341.7 259 70.3
Carub.0007s0176 Capsella rubella HOM05D004657 ORTHO05D005562 8.5e-92 341.7 253 70.4
PGR004G1209 Punica granatum HOM05D004657 ORTHO05D005562 1.1e-91 341.3 248 69.8
FAN23G0181 Fragaria x ananassa HOM05D004657 ORTHO05D005562 1.5e-91 340.9 248 69.4
Hma1.2p1_0047F.1_g027890 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 1.5e-91 340.9 253 70.0
CARHR246860 Cardamine hirsuta HOM05D004657 ORTHO05D005562 1.9e-91 340.5 253 70.4
RcHm_v2.0_Chr2g0114541 Rosa chinensis HOM05D004657 ORTHO05D005562 1.9e-91 340.5 250 68.4
Aa31LG6G15430 Aethionema arabicum HOM05D004657 ORTHO05D005562 2.5e-91 340.1 253 70.0
A01p00750 Brassica napus HOM05D004657 ORTHO05D005562 2.5e-91 340.1 253 68.8
BraA01t00078Z Brassica rapa HOM05D004657 ORTHO05D005562 2.5e-91 340.1 253 68.8
Gohir.A02G143600 Gossypium hirsutum HOM05D004657 ORTHO05D005562 4.2e-91 339.3 248 70.2
Cpa.g.sc621.1 Carica papaya HOM05D004657 ORTHO05D005562 1.2e-90 337.8 250 69.6
Gorai.003G038700 Gossypium raimondii HOM05D004657 ORTHO05D005562 1.2e-90 337.8 248 69.4
BcaNung00905 Brassica carinata HOM05D004657 ORTHO05D005562 2.1e-90 337.0 253 68.0
C01p00860 Brassica napus HOM05D004657 ORTHO05D005562 2.1e-90 337.0 253 68.0
BolC1t00087H Brassica oleracea HOM05D004657 ORTHO05D005562 2.1e-90 337.0 253 68.0
Potri.007G091900 Populus trichocarpa HOM05D004657 ORTHO05D005562 2.1e-90 337.0 246 68.3
TAR625G0843 Trochodendron aralioides HOM05D004657 ORTHO05D005562 2.7e-90 336.7 433 54.7
COL.COLO4_09954 Corchorus olitorius HOM05D004657 ORTHO05D005562 4.7e-90 335.9 248 68.5
Thecc.01G102700 Theobroma cacao HOM05D004657 ORTHO05D005562 4.7e-90 335.9 248 69.4
Sabra07G0075500 Salix brachista HOM05D004657 ORTHO05D005562 8.0e-90 335.1 248 69.0
Potri.005G076500 Populus trichocarpa HOM05D004657 ORTHO05D005562 1.0e-89 334.7 248 69.0
Ciclev10027598m.g Citrus clementina HOM05D004657 ORTHO05D005562 1.8e-89 334.0 243 71.6
Sabra05G0063000 Salix brachista HOM05D004657 ORTHO05D005562 1.8e-89 334.0 248 69.4
Lsat_1_v5_gn_4_142741 Lactuca sativa HOM05D004657 ORTHO05D005562 2.3e-89 333.6 252 69.0
Gohir.D03G036900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 3.0e-89 333.2 248 69.0
Lj6g0008145 Lotus japonicus HOM05D004657 ORTHO05D005562 3.9e-89 332.8 253 66.8
Cc00_g16220 Coffea canephora HOM05D004657 ORTHO05D005562 1.5e-88 330.9 252 69.8
QL06p049779 Quercus lobata HOM05D004657 ORTHO05D005562 1.5e-88 330.9 255 68.6
ClCG01G018830 Citrullus lanatus HOM05D004657 ORTHO05D005562 2.0e-88 330.5 248 68.5
Duzib147G0720 Durio zibethinus HOM05D004657 ORTHO05D005562 5.7e-88 328.9 248 67.7
MELO3C007762.2 Cucumis melo HOM05D004657 ORTHO05D005562 7.4e-88 328.6 248 68.1
Sed0024330 Sechium edule HOM05D004657 ORTHO05D005562 4.8e-87 325.9 243 70.0
THA.LOC104807698 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 6.3e-87 325.5 253 67.2
Duzib264G0234 Durio zibethinus HOM05D004657 ORTHO05D005562 1.1e-86 324.7 248 66.5
arahy.Tifrunner.gnm1.ann1.4BU7T8 Arachis hypogaea HOM05D004657 ORTHO05D005562 1.4e-86 324.3 246 67.5
arahy.Tifrunner.gnm1.ann1.Q2VPH2 Arachis hypogaea HOM05D004657 ORTHO05D005562 1.4e-86 324.3 246 67.5
CiPaw.04G098700 Carya illinoinensis HOM05D004657 ORTHO05D005562 1.8e-86 323.9 246 67.1
VMungo1383G1250 Vigna mungo HOM05D004657 ORTHO05D005562 1.8e-86 323.9 254 65.7
Lj2P550T25 Lonicera japonica HOM05D004657 ORTHO05D005562 2.4e-86 323.6 244 70.9
CsaV3_6G045490 Cucumis sativus L. HOM05D004657 ORTHO05D005562 4.1e-86 322.8 248 66.9
Medtr3g087360 Medicago truncatula HOM05D004657 ORTHO05D005562 2.0e-85 320.5 253 64.8
THA.LOC104824872 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 2.0e-85 320.5 253 65.2
Medtr8g090265 Medicago truncatula HOM05D004657 ORTHO05D005562 2.6e-85 320.1 259 66.0
Psat5g089640 Pisum sativum HOM05D004657 ORTHO05D005562 5.9e-85 318.9 435 53.3
TWI53G1309 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 1.0e-84 318.2 254 66.9
Atru.chr4.84 Acer truncatum HOM05D004657 ORTHO05D005562 2.9e-84 316.6 250 65.2
Phvul.002G255300 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 3.8e-84 316.2 246 65.0
CSS0006663 Camellia sinensis var. sinensis HOM05D004657 ORTHO05D005562 5.0e-84 315.8 255 64.3
CiPaw.03G141100 Carya illinoinensis HOM05D004657 ORTHO05D005562 5.0e-84 315.8 466 43.6
TPR.G6250 Trifolium pratense HOM05D004657 ORTHO05D005562 5.0e-84 315.8 236 69.5
VMungo0251G2127 Vigna mungo HOM05D004657 ORTHO05D005562 6.5e-84 315.5 252 64.3
Lalb_Chr07g0185151 Lupinus albus HOM05D004657 ORTHO05D005562 8.5e-84 315.1 245 67.3
Glyma.08G136600 Glycine max HOM05D004657 ORTHO05D005562 1.5e-83 314.3 254 64.6
Hma1.2p1_0308F.1_g120150 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 4.2e-83 312.8 444 46.2
Manes.12G135900 Manihot esculenta HOM05D004657 ORTHO05D005562 4.2e-83 312.8 455 45.7
Psat7g054320 Pisum sativum HOM05D004657 ORTHO05D005562 4.2e-83 312.8 235 69.8
Sc16g0005630 Simmondsia chinensis HOM05D004657 ORTHO05D005562 1.2e-82 311.2 248 64.5
Glyma.11G239700 Glycine max HOM05D004657 ORTHO05D005562 4.7e-82 309.3 249 64.3
HanXRQChr17g0543271 Helianthus annuus HOM05D004657 ORTHO05D005562 4.7e-82 309.3 255 65.9
Glyma.18G017700 Glycine max HOM05D004657 ORTHO05D005562 6.1e-82 308.9 249 63.9
DCAR_011511 Daucus carota HOM05D004657 ORTHO05D005562 1.4e-81 307.8 252 65.1
Rhsim10G0161200 Rhododendron simsii HOM05D004657 ORTHO05D005562 1.4e-81 307.8 243 66.7
MSTRG.23340 Avicennia marina HOM05D004657 ORTHO05D005562 2.3e-81 307.0 238 65.5
Peaxi162Scf00805g00021 Petunia axillaris HOM05D004657 ORTHO05D005562 4.0e-81 306.2 248 66.1
Phvul.001G251700 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 4.0e-81 306.2 249 63.5
MSTRG.3785 Avicennia marina HOM05D004657 ORTHO05D005562 6.8e-81 305.4 250 64.4
Lj4g0007261 Lotus japonicus HOM05D004657 ORTHO05D005562 1.2e-80 304.7 256 63.3
Migut.L00115 Erythranthe guttata HOM05D004657 ORTHO05D005562 1.5e-80 304.3 253 62.5
Manes.13G075300 Manihot esculenta HOM05D004657 ORTHO05D005562 1.5e-80 304.3 449 47.0
TWI77G0153 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 1.5e-80 304.3 248 62.5
Gohir.A11G200900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 3.4e-80 303.1 253 62.1
Gohir.D11G222100 Gossypium hirsutum HOM05D004657 ORTHO05D005562 3.4e-80 303.1 253 62.8
Solyc03g078640.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 7.5e-80 302.0 244 66.0
Nitab4.5_0000897g0030 Nicotiana tabacum HOM05D004657 ORTHO05D005562 1.7e-79 300.8 244 66.4
Lsat_1_v5_gn_5_43821 Lactuca sativa HOM05D004657 ORTHO05D005562 2.2e-79 300.4 247 64.0
Sopen03g021540 Solanum pennellii HOM05D004657 ORTHO05D005562 2.2e-79 300.4 244 65.6
PGSC0003DMG400023187 Solanum tuberosum HOM05D004657 ORTHO05D005562 3.7e-79 299.7 244 65.2
PGSC0003DMG400001895 Solanum tuberosum HOM05D004657 ORTHO05D005562 4.8e-79 299.3 248 64.1
unitig_748.g8654 Utricularia gibba HOM05D004657 ORTHO05D005562 6.3e-79 298.9 243 63.0
MBI02_g08733_MAGBIO Magnolia biondii HOM05D004657 ORTHO05D005562 3.1e-78 296.6 243 65.4
Nitab4.5_0000004g0340 Nicotiana tabacum HOM05D004657 ORTHO05D005562 4.1e-78 296.2 246 64.2
Gorai.007G239400 Gossypium raimondii HOM05D004657 ORTHO05D005562 9.1e-78 295.0 253 61.7
Solyc04g055090.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 9.1e-78 295.0 248 63.7
CAN.G480.1 Capsicum annuum HOM05D004657 ORTHO05D005562 7.7e-77 292.0 247 64.0
Sopen04g024940 Solanum pennellii HOM05D004657 ORTHO05D005562 2.2e-76 290.4 248 63.3
SGA_v2.0_scaffold34G13594 Striga asiatica HOM05D004657 ORTHO05D005562 8.5e-76 288.5 225 65.3
unitig_32.g11813 Utricularia gibba HOM05D004657 ORTHO05D005562 3.2e-75 286.6 253 58.9
Glyma.05G179100 Glycine max HOM05D004657 ORTHO05D005562 4.2e-75 286.2 238 63.0
MSTRG.2565 Avicennia marina HOM05D004657 ORTHO05D005562 6.1e-74 282.3 235 61.3
SalBow3G2946 Salvia bowleyana HOM05D004657 ORTHO05D005562 4.0e-73 279.6 218 67.4
DCAR_001485 Daucus carota HOM05D004657 ORTHO05D005562 3.1e-70 270.0 252 58.3
SGA_v2.0_scaffold47G17783 Striga asiatica HOM05D004657 ORTHO05D005562 1.7e-68 264.2 231 58.0
unitig_88.g27724 Utricularia gibba HOM05D004657 ORTHO05D005562 7.2e-67 258.8 224 58.0
Lj4g0017498 Lotus japonicus HOM05D004657 ORTHO05D005562 7.5e-64 248.8 247 55.9
SHI11535 Sapria himalayana HOM05D004657 ORTHO05D000023 1.6e-53 214.5 246 45.5
HPP92_016347 Vanilla planifolia HOM05D004657 ORTHO05D008789 7.3e-51 205.7 239 46.9
SEGI_28024 Sequoiadendron giganteum HOM05D004657 ORTHO05D005562 2.2e-47 194.1 257 43.6
Os08g0411300 Oryza sativa ssp. japonica HOM05D004657 ORTHO05D005562 5.4e-46 189.5 246 45.5
Zm00001eb001010 Zea mays HOM05D004657 ORTHO05D005562 1.6e-45 188.0 253 45.1
Actinidia36592 Actinidia chinensis HOM05D004657 ORTHO05D005562 1.1e-41 175.3 112 74.1
ATR0564G070 Amborella trichopoda HOM05D004657 ORTHO05D005562 1.1e-41 175.3 234 41.5
Mapoly0036s0106 Marchantia polymorpha HOM05D004657 ORTHO05D005562 1.2e-37 161.8 249 39.8
Nitab4.5_0000104g0160 Nicotiana tabacum HOM05D004657 ORTHO05D005562 3.1e-33 147.1 253 36.0
TPR.G17843 Trifolium pratense HOM05D004657 ORTHO05D005562 5.8e-32 142.9 89 71.9
CDE12G0473 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 1.4e-30 138.3 136 53.7
AagrBONN_evm.TU.Sc2ySwM_368.2671 Anthoceros agrestis HOM05D004657 ORTHO05D005562 2.4e-30 137.5 242 36.8
SMO012G0039 Selaginella moellendorffii HOM05D004657 ORTHO05D005562 2.1e-29 134.4 251 35.9
Pp3c24_14210 Physcomitrium patens HOM05D004657 ORTHO05D005562 1.7e-28 131.3 224 37.1
Zm00001eb119110 Zea mays HOM05D004657 ORTHO05D005562 2.3e-28 131.0 232 38.8
Pp3c8_17900 Physcomitrium patens HOM05D004657 ORTHO05D005562 2.0e-24 117.9 220 31.8
Zm00001eb272140 Zea mays HOM05D004657 ORTHO05D005562 4.4e-24 116.7 162 43.2
CBR_g45841 Chara braunii HOM05D004657 ORTHO05D005562 3.2e-22 110.5 230 33.0
Zm00001eb168110 Zea mays HOM05D004657 ORTHO05D005562 1.2e-21 108.6 225 35.1
CBR_g57642 Chara braunii HOM05D004657 ORTHO05D005562 2.3e-20 104.4 230 31.7
MD01G1028100 Malus domestica HOM05D004657 ORTHO05D005562 8.1e-18 95.9 89 50.6
Zm00001eb295260 Zea mays HOM05D004657 ORTHO05D005562 2.9e-15 87.4 247 32.8
Zm00001eb030060 Zea mays HOM05D004657 ORTHO05D005562 2.1e-13 81.3 105 45.7
Zm00001eb342170 Zea mays HOM05D004657 ORTHO05D005562 2.1e-13 81.3 105 44.8
Zm00001eb342160 Zea mays HOM05D004657 ORTHO05D005562 1.8e-12 78.2 136 37.5
Zm00001eb024090 Zea mays HOM05D004657 ORTHO05D005562 2.3e-12 77.8 108 43.5
Oeu054841.2 Olea europaea HOM05D004657 ORTHO05D005562 1.1e-11 75.5 84 46.4
Zm00001eb332070 Zea mays HOM05D004657 ORTHO05D005562 2.8e-10 70.9 55 50.9
Zm00001eb008600 Zea mays HOM05D004657 ORTHO05D005562 4.8e-10 70.1 216 29.6
Oeu002176.1 Olea europaea HOM05D004657 ORTHO05D005562 8.1e-10 69.3 48 54.2
Zm00001eb210920 Zea mays HOM05D004657 ORTHO05D005562 1.1e-09 68.9 182 31.3
Zm00001eb310250 Zea mays HOM05D004657 ORTHO05D005562 9.0e-09 65.9 140 36.4
CDE04G1361 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 2.6e-08 64.3 54 50.0
Sed0008262 Sechium edule HOM05D004657 ORTHO05D005562 1.0e-07 62.4 48 60.4
Zm00001eb394500 Zea mays HOM05D002775 ORTHO05D005562 1.1e-06 58.9 72 44.4
Zm00001eb272130 Zea mays HOM05D004657 ORTHO05D005562 3.2e-06 57.4 47 59.6


User provided reference genes

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