Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G4760 Papaver somniferum HOM05D005555 ORTHO05D006923 1.0e-235 819.7 427 100.0
PSO675G4173 Papaver somniferum HOM05D005555 ORTHO05D006923 2.6e-226 788.5 427 96.0
TAR627G0887 Trochodendron aralioides HOM05D005555 ORTHO05D006923 9.9e-194 680.2 424 83.0
GSVIVG01037655001 Vitis vinifera HOM05D005555 ORTHO05D006923 1.5e-189 666.4 422 82.2
Gorai.009G438400 Gossypium raimondii HOM05D005555 ORTHO05D006923 4.0e-187 658.3 416 81.5
Aqoxy1G02148 Aquilegia oxysepala HOM05D005555 ORTHO05D006923 9.9e-186 653.7 427 79.9
Nn1g07133 Nelumbo nucifera HOM05D005555 ORTHO05D006923 1.7e-185 652.9 421 80.5
Duzib268G1179 Durio zibethinus HOM05D005555 ORTHO05D006923 4.2e-184 648.3 416 80.0
Eucgr.F03470 Eucalyptus grandis HOM05D005555 ORTHO05D006923 1.2e-183 646.7 423 79.2
TWI39G0347 Tripterygium wilfordii HOM05D005555 ORTHO05D006923 1.3e-182 643.3 423 79.7
QL08p010014 Quercus lobata HOM05D005555 ORTHO05D006923 3.9e-182 641.7 419 79.0
Gohir.A04G016500 Gossypium hirsutum HOM05D005555 ORTHO05D006923 6.9e-179 630.9 416 78.6
CsaV3_7G021840 Cucumis sativus L. HOM05D005555 ORTHO05D006923 2.6e-178 629.0 421 77.2
Sed0005603 Sechium edule HOM05D005555 ORTHO05D006923 1.0e-177 627.1 421 77.2
CSS0046165 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 4.9e-177 624.8 422 77.0
Dinv22259 Davidia involucrata HOM05D005555 ORTHO05D006923 4.9e-177 624.8 427 77.0
Thecc.07G035900 Theobroma cacao HOM05D005555 ORTHO05D006923 6.5e-177 624.4 416 78.8
Manes.15G071400 Manihot esculenta HOM05D005555 ORTHO05D006923 8.4e-177 624.0 423 78.0
Ciclev10008353m.g Citrus clementina HOM05D005555 ORTHO05D006923 7.9e-175 617.5 422 77.0
Gohir.D05G369700 Gossypium hirsutum HOM05D005555 ORTHO05D006923 2.3e-174 615.9 416 77.4
BcaC08g43250 Brassica carinata HOM05D005555 ORTHO05D006923 1.5e-173 613.2 416 77.4
A06p02920 Brassica napus HOM05D005555 ORTHO05D006923 1.9e-173 612.8 416 77.6
BraA06t23497Z Brassica rapa HOM05D005555 ORTHO05D006923 1.9e-173 612.8 416 77.6
arahy.Tifrunner.gnm1.ann1.P3VUIG Arachis hypogaea HOM05D005555 ORTHO05D006923 3.3e-173 612.1 418 76.6
BcaC08g43248 Brassica carinata HOM05D005555 ORTHO05D006923 3.3e-173 612.1 416 77.4
C06p05960 Brassica napus HOM05D005555 ORTHO05D006923 3.3e-173 612.1 416 77.4
BolC6t35709H Brassica oleracea HOM05D005555 ORTHO05D006923 3.3e-173 612.1 416 77.4
Cpa.g.sc12.303 Carica papaya HOM05D005555 ORTHO05D006923 3.3e-173 612.1 417 77.2
arahy.Tifrunner.gnm1.ann1.UR7PB1 Arachis hypogaea HOM05D005555 ORTHO05D006923 4.3e-173 611.7 418 76.8
THA.LOC104817858 Tarenaya hassleriana HOM05D005555 ORTHO05D006923 9.7e-173 610.5 418 77.0
Actinidia35345 Actinidia chinensis HOM05D005555 ORTHO05D006923 2.2e-172 609.4 422 76.5
Sp1g37550 Schrenkiella parvula HOM05D005555 ORTHO05D006923 3.7e-172 608.6 419 77.6
Lj6g0008930 Lotus japonicus HOM05D005555 ORTHO05D006923 6.3e-172 607.8 416 75.5
Rhsim06G0217300 Rhododendron simsii HOM05D005555 ORTHO05D006923 6.3e-172 607.8 440 72.7
AL1G58400 Arabidopsis lyrata HOM05D005555 ORTHO05D006923 1.8e-171 606.3 416 76.9
arahy.Tifrunner.gnm1.ann1.QY89IE Arachis hypogaea HOM05D005555 ORTHO05D006923 3.1e-171 605.5 417 76.0
ECA240G0357 Erigeron canadensis HOM05D005555 ORTHO05D006923 6.9e-171 604.4 419 74.0
AT1G50710 Arabidopsis thaliana HOM05D005555 ORTHO05D006923 9.0e-171 604.0 416 76.7
Carub.0001s3974 Capsella rubella HOM05D005555 ORTHO05D006923 1.2e-170 603.6 416 76.7
CANSAT11G1088 Cannabis sativa HOM05D005555 ORTHO05D006923 2.0e-170 602.8 420 76.4
CSS0038584 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 3.4e-170 602.1 424 75.7
RcHm_v2.0_Chr2g0139231 Rosa chinensis HOM05D005555 ORTHO05D006923 5.9e-170 601.3 419 74.5
Hund15555 Selenicereus undatus HOM05D005555 ORTHO05D006923 5.9e-170 601.3 420 74.3
CiPaw.12G130100 Carya illinoinensis HOM05D005555 ORTHO05D006923 7.7e-170 600.9 418 74.2
Lj8C169T24 Lonicera japonica HOM05D005555 ORTHO05D006923 2.2e-169 599.4 461 70.5
MSTRG.6923 Avicennia marina HOM05D005555 ORTHO05D006923 3.8e-169 598.6 427 72.6
Migut.M01757 Erythranthe guttata HOM05D005555 ORTHO05D006923 1.1e-168 597.0 427 72.4
CiPaw.11G190000 Carya illinoinensis HOM05D005555 ORTHO05D006923 1.4e-168 596.7 421 74.8
Solyc12g005050.2 Solanum lycopersicum HOM05D005555 ORTHO05D006923 1.9e-168 596.3 414 74.2
CARHR040810 Cardamine hirsuta HOM05D005555 ORTHO05D006923 3.2e-168 595.5 416 75.7
Lalb_Chr20g0113831 Lupinus albus HOM05D005555 ORTHO05D006923 3.2e-168 595.5 417 74.6
Gorai.009G438500 Gossypium raimondii HOM05D005555 ORTHO05D006923 5.5e-168 594.7 416 75.2
Nn1g03520 Nelumbo nucifera HOM05D005555 ORTHO05D006923 5.5e-168 594.7 421 73.9
BcaB02g11175 Brassica carinata HOM05D005555 ORTHO05D006923 1.6e-167 593.2 416 75.7
CDE04G3207 Ceratophyllum demersum HOM05D005555 ORTHO05D006923 1.6e-167 593.2 422 72.3
Thhalv10011513m.g Eutrema salsugineum HOM05D005555 ORTHO05D006923 3.6e-167 592.0 418 75.6
Cc05_g13620 Coffea canephora HOM05D005555 ORTHO05D006923 6.1e-167 591.3 429 72.0
Sopen12g001050 Solanum pennellii HOM05D005555 ORTHO05D006923 1.0e-166 590.5 414 73.4
DCAR_016709 Daucus carota HOM05D005555 ORTHO05D006923 1.8e-166 589.7 426 73.7
Prupe.3G065100 Prunus persica HOM05D005555 ORTHO05D006923 1.8e-166 589.7 417 74.8
SGA_v2.0_scaffold172G39000 Striga asiatica HOM05D005555 ORTHO05D006923 1.8e-166 589.7 428 72.0
TPR.G33802 Trifolium pratense HOM05D005555 ORTHO05D006923 1.8e-166 589.7 431 73.5
Cc07_g19690 Coffea canephora HOM05D005555 ORTHO05D006923 3.0e-166 589.0 428 72.4
ClCG09G010820 Citrullus lanatus HOM05D005555 ORTHO05D006923 1.5e-165 586.6 465 68.4
VMungo0540G1244 Vigna mungo HOM05D005555 ORTHO05D006923 2.5e-165 585.9 416 73.6
Glyma.08G316800 Glycine max HOM05D005555 ORTHO05D006923 3.3e-165 585.5 416 74.3
Psat5g178680 Pisum sativum HOM05D005555 ORTHO05D006923 4.3e-165 585.1 417 73.9
FAN14G2902 Fragaria x ananassa HOM05D005555 ORTHO05D006923 1.3e-164 583.6 418 72.2
MELO3C013162.2 Cucumis melo HOM05D005555 ORTHO05D006923 6.3e-164 581.3 432 72.2
FAN05G3309 Fragaria x ananassa HOM05D005555 ORTHO05D006923 6.3e-164 581.3 418 72.0
BraA05t20906Z Brassica rapa HOM05D005555 ORTHO05D006923 8.2e-164 580.9 411 75.4
Glyma.18G096300 Glycine max HOM05D005555 ORTHO05D006923 1.1e-163 580.5 416 73.3
Medtr3g052180 Medicago truncatula HOM05D005555 ORTHO05D006923 1.1e-163 580.5 418 73.4
Aa31LG10G3630 Aethionema arabicum HOM05D005555 ORTHO05D006923 1.8e-163 579.7 423 72.6
PGR031G0129 Punica granatum HOM05D005555 ORTHO05D006923 4.1e-163 578.6 425 72.7
MBI05_g12021_MAGBIO Magnolia biondii HOM05D005555 ORTHO05D006923 6.9e-163 577.8 426 74.2
PGSC0003DMG400027869 Solanum tuberosum HOM05D005555 ORTHO05D006923 9.1e-163 577.4 420 72.1
A05p19990 Brassica napus HOM05D005555 ORTHO05D006923 2.6e-162 575.9 411 75.4
MD17G1190200 Malus domestica HOM05D005555 ORTHO05D006923 4.5e-162 575.1 419 72.6
Nitab4.5_0008473g0010 Nicotiana tabacum HOM05D005555 ORTHO05D006923 7.7e-162 574.3 420 71.0
Lsat_1_v5_gn_2_47780 Lactuca sativa HOM05D005555 ORTHO05D006923 1.0e-161 573.9 425 71.8
Phvul.006G044000 Phaseolus vulgaris HOM05D005555 ORTHO05D006923 1.7e-161 573.2 416 72.4
Potri.011G090800 Populus trichocarpa HOM05D005555 ORTHO05D006923 3.8e-161 572.0 426 73.0
Sc03g0008570 Simmondsia chinensis HOM05D005555 ORTHO05D006923 1.4e-160 570.1 374 78.3
Medtr5g049170 Medicago truncatula HOM05D005555 ORTHO05D006923 3.2e-160 568.9 418 72.0
Atru.chr2.3417 Acer truncatum HOM05D005555 ORTHO05D006923 7.2e-160 567.8 423 73.3
DCAR_001508 Daucus carota HOM05D005555 ORTHO05D006923 2.7e-159 565.8 426 72.1
HanXRQChr03g0076481 Helianthus annuus HOM05D005555 ORTHO05D006923 2.7e-159 565.8 403 72.5
CAN.G542.3 Capsicum annuum HOM05D005555 ORTHO05D006923 3.6e-159 565.5 414 70.8
CSS0007038 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 1.4e-158 563.5 438 70.8
EL10Ac2g03146 Beta vulgaris HOM05D005555 ORTHO05D006923 5.1e-158 561.6 432 70.4
arahy.Tifrunner.gnm1.ann1.GVQ212 Arachis hypogaea HOM05D005555 ORTHO05D006923 8.8e-158 560.8 453 67.3
Ah.10g032310 Amaranthus hybridus HOM05D005555 ORTHO05D006923 2.6e-157 559.3 414 72.2
ATR0752G192 Amborella trichopoda HOM05D005555 ORTHO05D006923 4.4e-157 558.5 422 70.4
FAN02G4472 Fragaria x ananassa HOM05D005555 ORTHO05D006923 1.1e-155 553.9 418 69.6
BcaB07g33510 Brassica carinata HOM05D005555 ORTHO05D006923 1.2e-154 550.4 430 70.5
MD09G1208700 Malus domestica HOM05D005555 ORTHO05D006923 1.1e-152 543.9 410 71.0
Nitab4.5_0000981g0050 Nicotiana tabacum HOM05D005555 ORTHO05D006923 1.4e-150 537.0 463 64.8
MD03G1200100 Malus domestica HOM05D005555 ORTHO05D006923 8.8e-150 534.3 417 68.3
Sabra11G0086200 Salix brachista HOM05D005555 ORTHO05D006923 2.6e-149 532.7 426 69.5
Ca_14731_v3 Cicer arietinum L. HOM05D005555 ORTHO05D006923 5.7e-149 531.6 499 59.9
unitig_744.g24404 Utricularia gibba HOM05D005555 ORTHO05D006923 8.2e-148 527.7 422 65.4
HPP92_010410 Vanilla planifolia HOM05D005555 ORTHO05D006923 1.8e-147 526.6 420 69.0
Peaxi162Scf00660g00816 Petunia axillaris HOM05D005555 ORTHO05D006923 5.3e-147 525.0 382 72.0
HanXRQChr05g0134351 Helianthus annuus HOM05D005555 ORTHO05D006923 2.6e-141 506.1 429 65.3
vmacro11723 Vaccinium macrocarpon HOM05D005555 ORTHO05D006923 3.3e-141 505.8 515 57.9
AUR62018195 Chenopodium quinoa HOM05D005555 ORTHO05D006923 1.7e-140 503.4 417 66.7
Cfa020338 Carpinus fangiana HOM05D005555 ORTHO05D006923 7.7e-138 494.6 379 72.0
Gohir.D05G369900 Gossypium hirsutum HOM05D005555 ORTHO05D006923 1.3e-137 493.8 416 66.8
RcHm_v2.0_Chr5g0039771 Rosa chinensis HOM05D005555 ORTHO05D006923 6.5e-137 491.5 414 64.3
Dinv40759 Davidia involucrata HOM05D005555 ORTHO05D006923 4.2e-136 488.8 380 71.6
Gohir.D05G370300 Gossypium hirsutum HOM05D005555 ORTHO05D006923 9.4e-136 487.6 372 71.8
Haze_09680 Corylus avellana HOM05D005555 ORTHO05D006923 2.1e-135 486.5 484 60.5
SMO352G0045 Selaginella moellendorffii HOM05D005555 ORTHO05D006923 9.8e-133 477.6 406 62.3
Zm00001eb230170 Zea mays HOM05D005555 ORTHO05D006923 3.1e-131 472.6 414 63.0
FvH4_3g22760 Fragaria vesca HOM05D005555 ORTHO05D006923 7.7e-130 468.0 415 61.9
Mapoly0032s0110 Marchantia polymorpha HOM05D005555 ORTHO05D006923 1.6e-127 460.3 436 56.9
Prupe.4G214200 Prunus persica HOM05D005555 ORTHO05D006923 8.9e-126 454.5 362 67.4
Sed0020027 Sechium edule HOM05D005555 ORTHO05D006923 2.4e-123 446.4 388 64.9
FAN16G3656 Fragaria x ananassa HOM05D005555 ORTHO05D006923 1.8e-118 430.3 398 60.3
FvH4_6g31880 Fragaria vesca HOM05D005555 ORTHO05D006923 6.8e-118 428.3 316 72.2
Pp3c17_11280 Physcomitrium patens HOM05D005555 ORTHO05D006923 6.8e-118 428.3 412 57.3
arahy.Tifrunner.gnm1.ann1.92YVPD Arachis hypogaea HOM05D005555 ORTHO05D006923 3.7e-116 422.5 422 55.5
TPR.G5778 Trifolium pratense HOM05D005555 ORTHO05D006923 7.0e-115 418.3 333 69.1
arahy.Tifrunner.gnm1.ann1.21WID0 Arachis hypogaea HOM05D005555 ORTHO05D006923 9.2e-107 391.3 429 51.7
AUR62038682 Chenopodium quinoa HOM05D005555 ORTHO05D006923 4.6e-106 389.0 415 54.9
FAN25G0297 Fragaria x ananassa HOM05D005555 ORTHO05D006923 8.3e-100 368.2 354 58.8
CBR_g19746 Chara braunii HOM05D005555 ORTHO05D006923 1.6e-71 274.2 376 41.0
Medtr5g049150 Medicago truncatula HOM05D005555 ORTHO05D006923 9.3e-67 258.5 206 68.0
CBR_g6714 Chara braunii HOM05D005555 ORTHO05D006923 5.7e-64 249.2 421 36.1
Os02g0119100 Oryza sativa ssp. japonica HOM05D005555 ORTHO05D006923 4.4e-40 169.9 204 51.5
TPR.G5733 Trifolium pratense HOM05D005555 ORTHO05D006923 1.7e-28 131.3 84 77.4
Lsat_1_v5_gn_9_94361 Lactuca sativa HOM05D005555 ORTHO05D006923 1.5e-16 91.7 55 76.4
Hma1.2p1_0206F.1_g087650 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 2.2e-15 87.8 44 90.9
Hma1.2p1_0545F.1_g176020 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 2.2e-15 87.8 44 90.9
Actinidia13832 Actinidia chinensis HOM05D005555 ORTHO05D006923 4.0e-09 67.0 53 73.6


User provided reference genes

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