Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G4755 Papaver somniferum HOM05D004624 ORTHO05D005357 1.8e-31 138.7 73 100.0
PSO675G0528 Papaver somniferum HOM05D004624 ORTHO05D005357 1.2e-30 136.0 73 98.6
PSO063G3723 Papaver somniferum HOM05D004624 ORTHO05D005357 2.6e-25 118.2 72 87.5
Ah.13g077180 Amaranthus hybridus HOM05D004624 ORTHO05D005357 5.0e-21 104.0 71 78.9
Cpa.g.sc116.84 Carica papaya HOM05D004624 ORTHO05D005357 1.9e-20 102.1 69 76.8
Cfa010947 Carpinus fangiana HOM05D004624 ORTHO05D005357 1.9e-20 102.1 62 79.0
Haze_02997 Corylus avellana HOM05D004624 ORTHO05D005357 1.9e-20 102.1 72 72.2
Cfa019982 Carpinus fangiana HOM05D004624 ORTHO05D005357 2.5e-20 101.7 74 73.0
Haze_20251 Corylus avellana HOM05D004624 ORTHO05D005357 3.3e-20 101.3 74 73.0
arahy.Tifrunner.gnm1.ann1.QE2DSJ Arachis hypogaea HOM05D004624 ORTHO05D005357 4.2e-20 100.9 71 73.2
PGR142G2854 Punica granatum HOM05D004624 ORTHO05D005357 4.2e-20 100.9 73 69.9
TAR633G0121 Trochodendron aralioides HOM05D004624 ORTHO05D005357 4.2e-20 100.9 70 70.0
vmacro17426 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 4.2e-20 100.9 76 68.4
arahy.Tifrunner.gnm1.ann1.Q8D3CZ Arachis hypogaea HOM05D004624 ORTHO05D005357 5.5e-20 100.5 70 74.3
vmacro08998 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 7.2e-20 100.1 73 71.2
Lalb_Chr19g0128161 Lupinus albus HOM05D004624 ORTHO05D005357 9.5e-20 99.8 72 70.8
Manes.10G062600 Manihot esculenta HOM05D004624 ORTHO05D005357 1.2e-19 99.4 73 69.9
CiPaw.10G042300 Carya illinoinensis HOM05D004624 ORTHO05D005357 1.6e-19 99.0 72 70.8
Glyma.03G068900 Glycine max HOM05D004624 ORTHO05D005357 2.1e-19 98.6 74 68.9
BcaB03g15084 Brassica carinata HOM05D004624 ORTHO05D005357 2.8e-19 98.2 66 75.8
AUR62018375 Chenopodium quinoa HOM05D004624 ORTHO05D005357 2.8e-19 98.2 64 78.1
Nitab4.5_0002193g0050 Nicotiana tabacum HOM05D004624 ORTHO05D005357 2.8e-19 98.2 74 67.6
Rhsim13G0121200 Rhododendron simsii HOM05D004624 ORTHO05D005357 2.8e-19 98.2 73 68.5
CAN.G65.122 Capsicum annuum HOM05D004624 ORTHO05D005357 3.6e-19 97.8 74 70.3
QL07p012089 Quercus lobata HOM05D004624 ORTHO05D005357 3.6e-19 97.8 77 68.8
Cc03_g11260 Coffea canephora HOM05D004624 ORTHO05D005357 4.7e-19 97.4 81 65.4
Glyma.01G100100 Glycine max HOM05D004624 ORTHO05D005357 4.7e-19 97.4 72 69.4
Gorai.001G127500 Gossypium raimondii HOM05D004624 ORTHO05D005357 4.7e-19 97.4 73 71.2
Hma1.2p1_0223F.1_g094210 Hydrangea macrophylla HOM05D004624 ORTHO05D005357 4.7e-19 97.4 58 81.0
Sabra16G0036900 Salix brachista HOM05D004624 ORTHO05D005357 4.7e-19 97.4 63 76.2
CSS0035187 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 6.1e-19 97.1 70 72.9
AUR62030290 Chenopodium quinoa HOM05D004624 ORTHO05D005357 6.1e-19 97.1 64 76.6
Gohir.D07G118600 Gossypium hirsutum HOM05D004624 ORTHO05D005357 6.1e-19 97.1 73 71.2
Nn7g37680 Nelumbo nucifera HOM05D004624 ORTHO05D005357 6.1e-19 97.1 71 67.6
GSVIVG01025772001 Vitis vinifera HOM05D004624 ORTHO05D005357 6.1e-19 97.1 70 70.0
AL6G43100 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 8.0e-19 96.7 67 73.1
AT4G09550 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 8.0e-19 96.7 67 73.1
CARHR260420 Cardamine hirsuta HOM05D004624 ORTHO05D005357 8.0e-19 96.7 67 73.1
Ciclev10010500m.g Citrus clementina HOM05D004624 ORTHO05D005357 8.0e-19 96.7 70 67.1
COL.COLO4_05868 Corchorus olitorius HOM05D004624 ORTHO05D005357 8.0e-19 96.7 58 81.0
Gorai.008G288400 Gossypium raimondii HOM05D004624 ORTHO05D005357 8.0e-19 96.7 58 81.0
Atru.chr12.1276 Acer truncatum HOM05D004624 ORTHO05D005357 1.0e-18 96.3 69 71.0
Aqoxy3G00212 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 1.0e-18 96.3 69 71.0
DCAR_020589 Daucus carota HOM05D004624 ORTHO05D005357 1.0e-18 96.3 66 72.7
Migut.J01633 Erythranthe guttata HOM05D004624 ORTHO05D005357 1.0e-18 96.3 72 66.7
Nitab4.5_0000645g0040 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.0e-18 96.3 74 66.2
Sp6g08080 Schrenkiella parvula HOM05D004624 ORTHO05D005357 1.0e-18 96.3 67 74.6
THA.LOC109116606 Tarenaya hassleriana HOM05D004624 ORTHO05D005357 1.0e-18 96.3 66 72.7
Migut.J01335 Erythranthe guttata HOM05D004624 ORTHO05D005357 1.4e-18 95.9 58 81.0
Lj1g0004051 Lotus japonicus HOM05D004624 ORTHO05D005357 1.4e-18 95.9 71 69.0
ECA248G3900 Erigeron canadensis HOM05D004624 ORTHO05D005357 1.8e-18 95.5 72 69.4
Thhalv10019414m.g Eutrema salsugineum HOM05D004624 ORTHO05D005357 1.8e-18 95.5 62 77.4
FvH4_5g29300 Fragaria vesca HOM05D004624 ORTHO05D005357 1.8e-18 95.5 73 65.8
FAN13G0550 Fragaria x ananassa HOM05D004624 ORTHO05D005357 1.8e-18 95.5 73 65.8
FAN18G4513 Fragaria x ananassa HOM05D004624 ORTHO05D005357 1.8e-18 95.5 73 65.8
Gohir.A07G114500 Gossypium hirsutum HOM05D004624 ORTHO05D005357 1.8e-18 95.5 73 68.5
Gohir.D12G268300 Gossypium hirsutum HOM05D004624 ORTHO05D005357 1.8e-18 95.5 73 68.5
Sed0025002 Sechium edule HOM05D004624 ORTHO05D005357 1.8e-18 95.5 65 70.8
PGSC0003DMG400026480 Solanum tuberosum HOM05D004624 ORTHO05D005357 1.8e-18 95.5 72 63.9
GSVIVG01021751001 Vitis vinifera HOM05D004624 ORTHO05D005357 1.8e-18 95.5 58 81.0
MBI17_g08328_MAGBIO Magnolia biondii HOM05D004624 ORTHO05D005357 2.3e-18 95.1 54 83.3
Nitab4.5_0000021g0900 Nicotiana tabacum HOM05D004624 ORTHO05D005357 2.3e-18 95.1 75 64.0
Nitab4.5_0006270g0030 Nicotiana tabacum HOM05D004624 ORTHO05D005357 2.3e-18 95.1 74 66.2
QL04p073121 Quercus lobata HOM05D004624 ORTHO05D005357 2.3e-18 95.1 55 85.5
AT1G73790 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 3.0e-18 94.7 65 73.8
Carub.0006s2800 Capsella rubella HOM05D004624 ORTHO05D005357 3.0e-18 94.7 67 71.6
Migut.J01336 Erythranthe guttata HOM05D004624 ORTHO05D005357 3.0e-18 94.7 58 81.0
Medtr4g124060 Medicago truncatula HOM05D004624 ORTHO05D005357 3.0e-18 94.7 72 68.1
Peaxi162Scf00815g00038 Petunia axillaris HOM05D004624 ORTHO05D005357 3.0e-18 94.7 74 63.5
Potri.016G034200 Populus trichocarpa HOM05D004624 ORTHO05D005357 3.0e-18 94.7 63 73.0
BraA07t31513Z Brassica rapa HOM05D004624 ORTHO05D005357 4.0e-18 94.4 68 70.6
CAN.G732.25 Capsicum annuum HOM05D004624 ORTHO05D005357 4.0e-18 94.4 64 71.9
Duzib205G0906 Durio zibethinus HOM05D004624 ORTHO05D005357 4.0e-18 94.4 58 79.3
MD03G1113900 Malus domestica HOM05D004624 ORTHO05D005357 4.0e-18 94.4 58 77.6
Phvul.001G120800 Phaseolus vulgaris HOM05D004624 ORTHO05D005357 4.0e-18 94.4 72 68.1
Psat0s1206g0080 Pisum sativum HOM05D004624 ORTHO05D005357 4.0e-18 94.4 69 66.7
Sc13g0000990 Simmondsia chinensis HOM05D004624 ORTHO05D005357 4.0e-18 94.4 72 66.7
Dinv15634 Davidia involucrata HOM05D004624 ORTHO05D005357 5.2e-18 94.0 63 76.2
Medtr2g008230 Medicago truncatula HOM05D004624 ORTHO05D005357 5.2e-18 94.0 71 67.6
Sp5g28970 Schrenkiella parvula HOM05D004624 ORTHO05D005357 5.2e-18 94.0 65 72.3
Sopen06g029060 Solanum pennellii HOM05D004624 ORTHO05D005357 5.2e-18 94.0 74 66.2
TPR.G12609 Trifolium pratense HOM05D004624 ORTHO05D005357 5.2e-18 94.0 70 67.1
AL2G33600 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 6.8e-18 93.6 68 73.5
Ca_07684_v3 Cicer arietinum L. HOM05D004624 ORTHO05D005357 6.8e-18 93.6 58 75.9
DCAR_028787 Daucus carota HOM05D004624 ORTHO05D005357 6.8e-18 93.6 58 77.6
Lalb_Chr19g0128151 Lupinus albus HOM05D004624 ORTHO05D005357 6.8e-18 93.6 72 66.7
Thecc.03G049000 Theobroma cacao HOM05D004624 ORTHO05D005357 6.8e-18 93.6 70 70.0
BcaC08g46798 Brassica carinata HOM05D004624 ORTHO05D005357 8.9e-18 93.2 58 79.3
C06p47930 Brassica napus HOM05D004624 ORTHO05D005357 8.9e-18 93.2 58 79.3
BolC6t39828H Brassica oleracea HOM05D004624 ORTHO05D005357 8.9e-18 93.2 58 79.3
CSS0023921 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 8.9e-18 93.2 67 68.7
CSS0026932 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 8.9e-18 93.2 67 68.7
Lj4g0019310 Lotus japonicus HOM05D004624 ORTHO05D005357 8.9e-18 93.2 58 77.6
Peaxi162Scf00516g00035 Petunia axillaris HOM05D004624 ORTHO05D005357 1.2e-17 92.8 76 60.5
Potri.006G035900 Populus trichocarpa HOM05D004624 ORTHO05D005357 1.2e-17 92.8 69 66.7
RcHm_v2.0_Chr7g0222161 Rosa chinensis HOM05D004624 ORTHO05D005357 1.2e-17 92.8 59 74.6
Sabra16G0054100 Salix brachista HOM05D004624 ORTHO05D005357 1.2e-17 92.8 63 74.6
CANSAT78G0048 Cannabis sativa HOM05D004624 ORTHO05D005357 1.5e-17 92.4 64 71.9
CANSAT78G2147 Cannabis sativa HOM05D004624 ORTHO05D005357 1.5e-17 92.4 64 71.9
Carub.0002s2054 Capsella rubella HOM05D004624 ORTHO05D005357 1.5e-17 92.4 68 72.1
MELO3C008583.2 Cucumis melo HOM05D004624 ORTHO05D005357 1.5e-17 92.4 64 68.8
FAN08G1983 Fragaria x ananassa HOM05D004624 ORTHO05D005357 1.5e-17 92.4 73 64.4
BraA07t30607Z Brassica rapa HOM05D004624 ORTHO05D005357 2.0e-17 92.0 62 74.2
ClCG11G007400 Citrullus lanatus HOM05D004624 ORTHO05D005357 2.0e-17 92.0 64 68.8
CsaV3_2G010390 Cucumis sativus L. HOM05D004624 ORTHO05D005357 2.0e-17 92.0 64 68.8
Rhsim04G0113600 Rhododendron simsii HOM05D004624 ORTHO05D005357 2.0e-17 92.0 70 68.6
RcHm_v2.0_Chr1g0330241 Rosa chinensis HOM05D004624 ORTHO05D005357 2.0e-17 92.0 73 64.4
Sabra06G0024000 Salix brachista HOM05D004624 ORTHO05D005357 2.0e-17 92.0 72 65.3
BcaB03g15728 Brassica carinata HOM05D004624 ORTHO05D005357 2.6e-17 91.7 58 77.6
C06p33840 Brassica napus HOM05D004624 ORTHO05D005357 2.6e-17 91.7 58 77.6
Manes.15G024800 Manihot esculenta HOM05D004624 ORTHO05D005357 2.6e-17 91.7 72 63.9
TWI53G0657 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 2.6e-17 91.7 58 77.6
TWI74G0338 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 2.6e-17 91.7 58 77.6
Aa31LG4G10460 Aethionema arabicum HOM05D004624 ORTHO05D005357 3.4e-17 91.3 67 67.2
CDE05G2943 Ceratophyllum demersum HOM05D004624 ORTHO05D005357 3.4e-17 91.3 59 72.9
Prupe.8G075600 Prunus persica HOM05D004624 ORTHO05D005357 3.4e-17 91.3 73 64.4
TPR.G16719 Trifolium pratense HOM05D004624 ORTHO05D005357 3.4e-17 91.3 70 65.7
Eucgr.K01650 Eucalyptus grandis HOM05D004624 ORTHO05D005357 4.4e-17 90.9 58 75.9
BcaC08g45622 Brassica carinata HOM05D004624 ORTHO05D005357 5.7e-17 90.5 58 77.6
HanXRQChr11g0352301 Helianthus annuus HOM05D004624 ORTHO05D005357 9.8e-17 89.7 65 69.2
Nitab4.5_0003447g0020 Nicotiana tabacum HOM05D004624 ORTHO05D005357 9.8e-17 89.7 58 72.4
CARHR066880 Cardamine hirsuta HOM05D004624 ORTHO05D005357 1.7e-16 89.0 64 70.3
TAR627G0533 Trochodendron aralioides HOM05D004624 ORTHO05D005357 1.7e-16 89.0 67 67.2
Sopen03g028160 Solanum pennellii HOM05D004624 ORTHO05D005357 2.8e-16 88.2 66 65.2
unitig_746.g26892 Utricularia gibba HOM05D004624 ORTHO05D005357 3.7e-16 87.8 65 66.2
Actinidia05484 Actinidia chinensis HOM05D004624 ORTHO05D005357 4.9e-16 87.4 58 77.6
Aqoxy3G02929 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 4.9e-16 87.4 58 75.9
Cpa.g.sc883.1 Carica papaya HOM05D004624 ORTHO05D005357 8.3e-16 86.7 58 74.1
Nitab4.5_0006185g0060 Nicotiana tabacum HOM05D004624 ORTHO05D005357 8.3e-16 86.7 58 70.7
COL.COLO4_37401 Corchorus olitorius HOM05D004624 ORTHO05D005357 1.1e-15 86.3 67 65.7
ECA238G3634 Erigeron canadensis HOM05D000185 ORTHO05D000105 1.1e-15 86.3 70 60.0
Thecc.05G198400 Theobroma cacao HOM05D004624 ORTHO05D005357 3.2e-15 84.7 55 74.5
SHI11762 Sapria himalayana HOM05D004624 ORTHO05D005357 5.4e-15 84.0 67 64.2
EL10Ac4g09929 Beta vulgaris HOM05D004624 ORTHO05D005357 9.2e-15 83.2 55 72.7
Zm00001eb062930 Zea mays HOM05D004624 ORTHO05D005357 2.0e-14 82.0 51 78.4
Os03g0435900 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 3.5e-14 81.3 66 62.1
Os11g0368172 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 3.5e-14 81.3 66 62.1
Os03g0824000 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 4.6e-14 80.9 51 76.5
Pp3c13_4560 Physcomitrium patens HOM05D004624 ORTHO05D005357 7.8e-14 80.1 58 69.0
PRCOL_00005147 Prasinoderma coloniale HOM05D004624 ORTHO05D005357 1.3e-13 79.3 58 63.8
Pp3c12_8260 Physcomitrium patens HOM05D004624 ORTHO05D005357 1.1e-12 76.3 67 59.7
CBR_g23420 Chara braunii HOM05D004624 ORTHO05D005357 2.5e-12 75.1 58 58.6
AagrBONN_evm.TU.Sc2ySwM_340.447 Anthoceros agrestis HOM05D004624 ORTHO05D005357 3.3e-12 74.7 58 62.1
SalBow6G5026 Salvia bowleyana HOM05D004624 ORTHO05D005357 4.3e-12 74.3 49 75.5
HPP92_018529 Vanilla planifolia HOM05D004624 ORTHO05D005357 5.6e-12 73.9 70 51.4
FvH4_2g13790 Fragaria vesca HOM05D004624 ORTHO05D005357 9.5e-12 73.2 59 62.7
FAN24G0569 Fragaria x ananassa HOM05D004624 ORTHO05D005357 9.5e-12 73.2 59 62.7
Atru.chr12.1164 Acer truncatum HOM05D004624 ORTHO05D005357 1.2e-11 72.8 51 68.6
SMO172G0211 Selaginella moellendorffii HOM05D004624 ORTHO05D005357 1.6e-11 72.4 52 65.4
Mapoly0109s0047 Marchantia polymorpha HOM05D004624 ORTHO05D005357 2.8e-11 71.6 66 54.5
MD11G1133700 Malus domestica HOM05D004624 ORTHO05D005357 3.6e-11 71.2 41 80.5
Solyc03g097400.1 Solanum lycopersicum HOM05D004624 ORTHO05D005357 8.0e-11 70.1 54 61.1
MCO02G029 Micromonas commoda HOM05D004624 ORTHO05D005357 1.0e-10 69.7 58 55.2
Solyc06g072690.3 Solanum lycopersicum HOM05D004624 ORTHO05D005357 1.2e-09 66.2 56 62.5
Cre14.g610000 Chlamydomonas reinhardtii HOM05D004624 ORTHO05D005357 3.2e-07 58.2 57 49.1
Lsat_1_v5_gn_1_43120 Lactuca sativa HOM05D004624 ORTHO05D005357 3.5e-06 54.7 32 78.1


User provided reference genes

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