Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G4749 Papaver somniferum HOM05D005072 ORTHO05D006209 0.0e+00 1194.1 603 100.0
PSO675G4775 Papaver somniferum HOM05D005072 ORTHO05D006209 0.0e+00 1169.5 603 97.7
Aqoxy2G00052 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 1.7e-255 885.9 597 72.5
TAR623G1264 Trochodendron aralioides HOM05D005072 ORTHO05D006209 5.4e-254 880.9 603 72.8
Dinv24604 Davidia involucrata HOM05D005072 ORTHO05D006209 4.4e-240 834.7 589 70.1
Cfa010164 Carpinus fangiana HOM05D005072 ORTHO05D006209 9.6e-235 817.0 590 68.5
Hma1.2p1_1843F.1_g305080 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 4.2e-230 801.6 594 67.7
MBI13_g20755_MAGBIO Magnolia biondii HOM05D005072 ORTHO05D006209 1.5e-227 793.1 662 62.5
Prupe.4G269200 Prunus persica HOM05D005072 ORTHO05D006209 7.4e-227 790.8 590 66.3
Ciclev10014694m.g Citrus clementina HOM05D005072 ORTHO05D006209 6.9e-225 784.3 591 65.3
TWI79G0414 Tripterygium wilfordii HOM05D005072 ORTHO05D006209 4.2e-222 775.0 596 64.8
Atru.chr3.2833 Acer truncatum HOM05D005072 ORTHO05D006209 4.6e-221 771.5 606 65.2
MD03G1163400 Malus domestica HOM05D005072 ORTHO05D006209 4.6e-221 771.5 590 65.6
GSVIVG01037391001 Vitis vinifera HOM05D005072 ORTHO05D006209 7.9e-221 770.8 610 63.6
vmacro14280 Vaccinium macrocarpon HOM05D005072 ORTHO05D006209 1.6e-218 763.1 599 63.4
Haze_23549 Corylus avellana HOM05D005072 ORTHO05D006209 6.2e-218 761.1 615 64.1
Thecc.09G251600 Theobroma cacao HOM05D005072 ORTHO05D006209 3.1e-217 758.8 594 64.1
RcHm_v2.0_Chr7g0190441 Rosa chinensis HOM05D005072 ORTHO05D006209 4.2e-214 748.4 605 64.0
Lj1C290G6 Lonicera japonica HOM05D005072 ORTHO05D006209 2.3e-212 742.7 596 62.2
Hund21956 Selenicereus undatus HOM05D005072 ORTHO05D006209 7.4e-211 737.6 586 62.6
SGA_v2.0_scaffold16G07591 Striga asiatica HOM05D005072 ORTHO05D006209 2.8e-210 735.7 605 61.5
CiPaw.14G108700 Carya illinoinensis HOM05D005072 ORTHO05D006209 3.7e-210 735.3 522 69.2
COL.COLO4_33262 Corchorus olitorius HOM05D005072 ORTHO05D006209 3.7e-210 735.3 593 61.9
Duzib170G0952 Durio zibethinus HOM05D005072 ORTHO05D006209 3.7e-210 735.3 593 62.7
CANSAT54G0197 Cannabis sativa HOM05D005072 ORTHO05D006209 4.8e-210 734.9 589 63.8
Gohir.D08G019500 Gossypium hirsutum HOM05D005072 ORTHO05D006209 4.1e-209 731.9 593 61.6
Gorai.004G014000 Gossypium raimondii HOM05D005072 ORTHO05D006209 5.3e-209 731.5 593 61.4
Ca_06178_v3 Cicer arietinum L. HOM05D005072 ORTHO05D006209 2.6e-208 729.2 593 63.7
CAN.G651.4 Capsicum annuum HOM05D005072 ORTHO05D006209 5.9e-208 728.0 590 61.9
Migut.N02404 Erythranthe guttata HOM05D005072 ORTHO05D006209 5.9e-208 728.0 609 61.2
Cpa.g.sc34.205 Carica papaya HOM05D005072 ORTHO05D006209 1.3e-207 726.9 601 61.7
Oeu032059.1 Olea europaea HOM05D005072 ORTHO05D006209 1.7e-207 726.5 595 61.3
QL01p016041 Quercus lobata HOM05D005072 ORTHO05D006209 2.9e-207 725.7 791 50.3
Gohir.A08G009400 Gossypium hirsutum HOM05D005072 ORTHO05D006209 3.8e-207 725.3 593 61.2
Lalb_Chr10g0106071 Lupinus albus HOM05D005072 ORTHO05D006209 3.8e-207 725.3 592 62.7
Eucgr.B03761 Eucalyptus grandis HOM05D005072 ORTHO05D006209 6.5e-207 724.5 601 61.4
Medtr5g088780 Medicago truncatula HOM05D005072 ORTHO05D006209 1.9e-206 723.0 576 63.7
TPR.G16394 Trifolium pratense HOM05D005072 ORTHO05D006209 9.4e-206 720.7 556 66.0
FAN18G1184 Fragaria x ananassa HOM05D005072 ORTHO05D006209 6.1e-205 718.0 605 61.0
FvH4_5g07960 Fragaria vesca HOM05D005072 ORTHO05D006209 2.3e-204 716.1 611 60.2
PGR102G1516 Punica granatum HOM05D005072 ORTHO05D006209 3.9e-204 715.3 591 61.1
Sopen01g004520 Solanum pennellii HOM05D005072 ORTHO05D006209 5.1e-204 714.9 585 60.9
Glyma.02G277200 Glycine max HOM05D005072 ORTHO05D006209 3.3e-203 712.2 586 62.1
Glyma.14G038000 Glycine max HOM05D005072 ORTHO05D006209 4.3e-203 711.8 588 62.2
HanXRQChr05g0144311 Helianthus annuus HOM05D005072 ORTHO05D006209 7.4e-203 711.1 586 61.9
Solyc01g009030.4 Solanum lycopersicum HOM05D005072 ORTHO05D006209 7.4e-203 711.1 585 60.5
Cc01_g07180 Coffea canephora HOM05D005072 ORTHO05D006209 3.7e-202 708.8 599 60.3
CSS0034993 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 4.8e-202 708.4 585 61.7
arahy.Tifrunner.gnm1.ann1.BCWF2K Arachis hypogaea HOM05D005072 ORTHO05D006209 8.2e-202 707.6 585 61.5
Potri.009G022200 Populus trichocarpa HOM05D005072 ORTHO05D006209 8.2e-202 707.6 597 60.0
Phvul.008G203700 Phaseolus vulgaris HOM05D005072 ORTHO05D006209 1.8e-201 706.4 581 61.1
Nitab4.5_0002300g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 4.1e-201 705.3 597 59.6
FAN04G1678 Fragaria x ananassa HOM05D005072 ORTHO05D006209 2.6e-200 702.6 605 60.2
CsaV3_6G038680 Cucumis sativus L. HOM05D005072 ORTHO05D006209 3.4e-200 702.2 600 59.0
FAN13G0840 Fragaria x ananassa HOM05D005072 ORTHO05D006209 5.9e-200 701.4 605 60.3
ECA238G1118 Erigeron canadensis HOM05D005072 ORTHO05D006209 7.7e-200 701.0 592 62.3
FAN08G0571 Fragaria x ananassa HOM05D005072 ORTHO05D006209 2.2e-199 699.5 605 60.2
MELO3C014531.2 Cucumis melo HOM05D005072 ORTHO05D006209 3.8e-199 698.7 600 58.5
Manes.02G135100 Manihot esculenta HOM05D005072 ORTHO05D006209 6.5e-199 698.0 524 65.8
ClCG02G022550 Citrullus lanatus HOM05D005072 ORTHO05D006209 1.1e-198 697.2 604 58.9
Psat0s680g0080 Pisum sativum HOM05D005072 ORTHO05D006209 1.1e-198 697.2 549 63.8
THA.LOC104799144 Tarenaya hassleriana HOM05D005072 ORTHO05D006209 1.9e-198 696.4 592 58.4
EL10Ac4g10071 Beta vulgaris HOM05D005072 ORTHO05D006209 3.2e-198 695.7 599 58.6
CARHR200820 Cardamine hirsuta HOM05D005072 ORTHO05D006209 4.2e-198 695.3 586 59.4
Sp6g31350 Schrenkiella parvula HOM05D005072 ORTHO05D006209 4.2e-198 695.3 598 57.9
A02p01460 Brassica napus HOM05D005072 ORTHO05D006209 5.5e-198 694.9 586 59.2
DCAR_023860 Daucus carota HOM05D005072 ORTHO05D006209 7.2e-198 694.5 518 65.3
MSTRG.12421 Avicennia marina HOM05D005072 ORTHO05D006209 1.2e-197 693.7 609 59.6
C02p05680 Brassica napus HOM05D005072 ORTHO05D006209 2.1e-197 693.0 586 59.0
arahy.Tifrunner.gnm1.ann1.2SU3A5 Arachis hypogaea HOM05D005072 ORTHO05D006209 6.1e-197 691.4 625 57.8
BraA02t05125Z Brassica rapa HOM05D005072 ORTHO05D006209 6.1e-197 691.4 594 58.6
BolC2t06512H Brassica oleracea HOM05D005072 ORTHO05D006209 5.1e-196 688.3 594 58.2
Nitab4.5_0000428g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 2.6e-195 686.0 577 60.0
Aa31LG3G14940 Aethionema arabicum HOM05D005072 ORTHO05D006209 3.7e-194 682.2 601 57.7
Carub.0006s1080 Capsella rubella HOM05D005072 ORTHO05D006209 3.7e-194 682.2 589 57.6
LjContig00564g0010958 Lotus japonicus HOM05D005072 ORTHO05D006209 8.2e-194 681.0 590 61.2
AL6G23090 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 9.1e-193 677.6 589 57.2
Thhalv10013024m.g Eutrema salsugineum HOM05D005072 ORTHO05D006209 2.6e-192 676.0 586 57.5
A03p05510 Brassica napus HOM05D005072 ORTHO05D006209 2.2e-191 672.9 586 58.0
BolC3t13149H Brassica oleracea HOM05D005072 ORTHO05D006209 6.5e-191 671.4 589 57.6
Lsat_1_v5_gn_2_36161 Lactuca sativa HOM05D005072 ORTHO05D006209 1.9e-190 669.8 577 59.8
C03p06430 Brassica napus HOM05D005072 ORTHO05D006209 2.1e-189 666.4 584 57.4
CSS0024863 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 2.0e-187 659.8 557 60.9
Ah.04g159570 Amaranthus hybridus HOM05D005072 ORTHO05D006209 2.8e-186 656.0 585 57.4
BraA03t09889Z Brassica rapa HOM05D005072 ORTHO05D006209 5.3e-185 651.7 524 60.9
Peaxi162Scf00050g02225 Petunia axillaris HOM05D005072 ORTHO05D006209 1.0e-183 647.5 576 58.5
Sc06g0004780 Simmondsia chinensis HOM05D005072 ORTHO05D006209 3.0e-180 636.0 489 64.2
AUR62006578 Chenopodium quinoa HOM05D005072 ORTHO05D006209 4.4e-179 632.1 598 53.3
Sed0004908 Sechium edule HOM05D005072 ORTHO05D006209 2.2e-175 619.8 561 56.7
AUR62000232 Chenopodium quinoa HOM05D005072 ORTHO05D006209 1.9e-174 616.7 623 52.0
SalBow3G4478 Salvia bowleyana HOM05D005072 ORTHO05D006209 1.4e-172 610.5 628 54.0
ATR0307G105 Amborella trichopoda HOM05D005072 ORTHO05D006209 1.7e-170 603.6 471 65.6
Zm00001eb017230 Zea mays HOM05D005072 ORTHO05D006209 3.8e-167 592.4 580 52.4
BcaB01g05412 Brassica carinata HOM05D005072 ORTHO05D006209 4.2e-166 589.0 586 52.9
AT5G12290 Arabidopsis thaliana HOM05D005072 ORTHO05D006209 2.1e-165 586.6 515 57.3
Actinidia38495 Actinidia chinensis HOM05D005072 ORTHO05D006209 1.4e-156 557.4 355 75.2
unitig_27.g25017 Utricularia gibba HOM05D005072 ORTHO05D006209 1.2e-139 501.1 617 46.2
Os03g0377500 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 3.9e-127 459.5 447 53.7
Pp3c22_1870 Physcomitrium patens HOM05D005072 ORTHO05D006209 4.8e-125 452.6 545 45.7
Duzib168G1271 Durio zibethinus HOM05D005072 ORTHO05D006209 3.2e-121 439.9 378 59.0
Mapoly0034s0093 Marchantia polymorpha HOM05D005072 ORTHO05D006209 3.9e-119 433.0 553 42.3
Pp3c3_6740 Physcomitrium patens HOM05D005072 ORTHO05D006209 1.3e-117 427.9 564 42.4
HPP92_015601 Vanilla planifolia HOM05D005072 ORTHO05D006209 4.8e-117 426.0 300 70.0
SMO147G0386 Selaginella moellendorffii HOM05D005072 ORTHO05D006209 9.0e-116 421.8 504 43.8
Lj1C297T8 Lonicera japonica HOM05D005072 ORTHO05D006209 9.0e-108 395.2 337 57.9
Aqoxy279s001 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 8.4e-106 388.7 284 65.8
Nn7g36972 Nelumbo nucifera HOM05D005072 ORTHO05D006209 3.4e-99 366.7 403 50.1
Actinidia29952 Actinidia chinensis HOM05D005072 ORTHO05D006209 8.5e-90 335.5 280 60.7
CDE07G0611 Ceratophyllum demersum HOM05D005072 ORTHO05D006209 3.2e-89 333.6 216 76.9
Glyma.14G037400 Glycine max HOM05D005072 ORTHO05D006209 1.1e-76 292.0 216 68.1
Os03g0377300 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 1.4e-76 291.6 312 46.8
CBR_g51661 Chara braunii HOM05D005072 ORTHO05D006209 3.8e-74 283.5 583 32.2
AagrBONN_evm.TU.Sc2ySwM_117.924 Anthoceros agrestis HOM05D005072 ORTHO05D006209 5.7e-70 269.6 361 37.4
PGSC0003DMG403022702 Solanum tuberosum HOM05D005072 ORTHO05D006209 1.2e-64 251.9 175 69.1
Actinidia27132 Actinidia chinensis HOM05D005072 ORTHO05D006209 9.4e-57 225.7 170 67.1
SEGI_25760 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 5.6e-41 173.3 123 64.2
Lj1A297G59 Lonicera japonica HOM05D005072 ORTHO05D006209 3.1e-39 167.5 112 69.6
SEGI_30846 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 5.2e-39 166.8 122 68.9
Hma1.2p1_2592F.1_g325060 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 6.2e-32 143.3 107 65.4
Os03g0356470 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 1.7e-29 135.2 168 43.5
ECA233G6112 Erigeron canadensis HOM05D005072 ORTHO05D006209 3.7e-29 134.0 220 36.4
MCO07G292 Micromonas commoda HOM05D005072 ORTHO05D006209 1.3e-26 125.6 617 22.7
SEGI_31829 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 8.6e-26 122.9 129 48.8
Nn001s41348 Nelumbo nucifera HOM05D005072 ORTHO05D006209 1.9e-25 121.7 71 78.9
Hma1.2p1_2592F.1_g325070 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 3.3e-25 120.9 112 56.2
Lsat_1_v5_gn_5_119240 Lactuca sativa HOM05D005072 ORTHO05D006209 4.7e-24 117.1 128 47.7
AL340U10010 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 1.1e-23 115.9 94 55.3
Cre14.g610351 Chlamydomonas reinhardtii HOM05D005072 ORTHO05D006209 5.8e-22 110.2 216 33.3
Lsat_1_v5_gn_4_59101 Lactuca sativa HOM05D005072 ORTHO05D006209 2.1e-16 91.7 102 47.1
ECA248G3958 Erigeron canadensis HOM05D005072 ORTHO05D006209 8.9e-15 86.3 151 37.1
VMungo1215G1729 Vigna mungo HOM05D005072 ORTHO05D006209 4.4e-14 84.0 82 53.7
Lsat_1_v5_gn_8_119321 Lactuca sativa HOM05D005072 ORTHO05D006209 9.9e-14 82.8 60 60.0
Cfa026272 Carpinus fangiana HOM05D005072 ORTHO05D126095 1.3e-13 82.4 237 27.0
VMungo1127G1498 Vigna mungo HOM05D005072 ORTHO05D006209 2.2e-13 81.6 82 52.4
VMungo1245G0001 Vigna mungo HOM05D005072 ORTHO05D006209 2.2e-13 81.6 85 50.6
Oeu032057.1 Olea europaea HOM05D005072 ORTHO05D006209 4.9e-13 80.5 156 34.0
arahy.Tifrunner.gnm1.ann1.N4LM1Q Arachis hypogaea HOM05D005072 ORTHO05D007788 1.6e-11 75.5 58 63.8
arahy.Tifrunner.gnm1.ann1.ELE64U Arachis hypogaea HOM05D005072 ORTHO05D006209 2.1e-11 75.1 117 38.5
SMO025G0001 Selaginella moellendorffii HOM05D012532 ORTHO05D006209 2.3e-10 71.6 138 35.5
Lsat_1_v5_gn_4_56401 Lactuca sativa HOM05D005072 ORTHO05D006209 5.1e-10 70.5 60 55.0
Glyma.09G128251 Glycine max HOM05D005072 ORTHO05D006209 2.8e-08 64.7 62 53.2
Nn1g07055 Nelumbo nucifera HOM05D005072 ORTHO05D006209 6.2e-08 63.5 59 52.5


User provided reference genes

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