Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G4732 Papaver somniferum HOM05D001081 ORTHO05D007101 4.3e-68 261.2 129 100.0
PSO675G3624 Papaver somniferum HOM05D001081 ORTHO05D007101 4.3e-68 261.2 129 100.0
Nn6g34886 Nelumbo nucifera HOM05D001081 ORTHO05D007101 3.8e-56 221.5 126 84.1
Aqoxy4G03008 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 5.0e-56 221.1 126 84.1
Nn3g16671 Nelumbo nucifera HOM05D001081 ORTHO05D007101 6.5e-56 220.7 126 84.1
TAR625G0271 Trochodendron aralioides HOM05D001081 ORTHO05D007101 4.2e-55 218.0 127 82.7
CDE05G3015 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 5.5e-55 217.6 127 81.9
Aqoxy3G01434 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 9.4e-55 216.9 126 83.3
QL09p008866 Quercus lobata HOM05D001081 ORTHO05D007101 1.2e-54 216.5 127 80.3
QL09p009112 Quercus lobata HOM05D001081 ORTHO05D007101 1.2e-54 216.5 127 80.3
PGSC0003DMG401028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 1.2e-54 216.5 124 81.5
PGSC0003DMG402028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 1.2e-54 216.5 124 81.5
Hund21005 Selenicereus undatus HOM05D001081 ORTHO05D007101 6.1e-54 214.2 127 80.3
CAN.G411.51 Capsicum annuum HOM05D001081 ORTHO05D007101 7.9e-54 213.8 124 79.8
Haze_00208 Corylus avellana HOM05D001081 ORTHO05D004708 7.9e-54 213.8 127 78.7
TAR381G1700 Trochodendron aralioides HOM05D001081 ORTHO05D007101 7.9e-54 213.8 127 80.3
vmacro12512 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 7.9e-54 213.8 126 81.0
CiPaw.06G046200 Carya illinoinensis HOM05D001081 ORTHO05D007101 1.0e-53 213.4 127 79.5
AUR62018052 Chenopodium quinoa HOM05D001081 ORTHO05D007101 1.0e-53 213.4 127 81.9
Cpa.g.sc3.88 Carica papaya HOM05D001081 ORTHO05D007101 1.8e-53 212.6 127 79.5
GSVIVG01009969001 Vitis vinifera HOM05D001081 ORTHO05D007101 1.8e-53 212.6 124 81.5
AUR62023429 Chenopodium quinoa HOM05D001081 ORTHO05D007101 2.3e-53 212.2 127 81.1
Glyma.05G143900 Glycine max HOM05D001081 ORTHO05D007101 2.3e-53 212.2 127 78.7
MBI07_g23667_MAGBIO Magnolia biondii HOM05D001081 ORTHO05D007101 2.3e-53 212.2 129 79.8
Sed0012325 Sechium edule HOM05D001081 ORTHO05D007101 2.3e-53 212.2 127 79.5
Sopen12g021840 Solanum pennellii HOM05D001081 ORTHO05D007101 2.3e-53 212.2 124 81.5
Ah.05g173160 Amaranthus hybridus HOM05D001081 ORTHO05D007101 3.0e-53 211.8 127 80.3
CsaV3_3G019840 Cucumis sativus L. HOM05D001081 ORTHO05D007101 5.2e-53 211.1 118 84.7
Lj4P697T30 Lonicera japonica HOM05D001081 ORTHO05D007101 5.2e-53 211.1 131 77.1
MELO3C008496.2 Cucumis melo HOM05D001081 ORTHO05D007101 6.7e-53 210.7 118 84.7
ECA238G0006 Erigeron canadensis HOM05D001081 ORTHO05D007101 8.8e-53 210.3 125 79.2
Nitab4.5_0004513g0030 Nicotiana tabacum HOM05D001081 ORTHO05D007101 8.8e-53 210.3 124 80.6
Glyma.08G100200 Glycine max HOM05D001081 ORTHO05D007101 1.1e-52 209.9 127 78.0
TWI74G0183 Tripterygium wilfordii HOM05D001081 ORTHO05D007101 1.1e-52 209.9 127 78.7
Gohir.D05G099900 Gossypium hirsutum HOM05D001081 ORTHO05D007101 1.5e-52 209.5 127 78.7
Gorai.009G103900 Gossypium raimondii HOM05D001081 ORTHO05D007101 1.5e-52 209.5 127 78.7
Sopen12g021900 Solanum pennellii HOM05D001081 ORTHO05D007101 1.5e-52 209.5 124 80.6
Thecc.03G199300 Theobroma cacao HOM05D001081 ORTHO05D007101 1.5e-52 209.5 127 81.1
Cfa016232 Carpinus fangiana HOM05D001081 ORTHO05D007101 2.0e-52 209.1 127 77.2
Lalb_Chr13g0294051 Lupinus albus HOM05D001081 ORTHO05D007101 2.0e-52 209.1 127 77.2
Nitab4.5_0004146g0010 Nicotiana tabacum HOM05D001081 ORTHO05D007101 2.0e-52 209.1 124 80.6
Peaxi162Scf00071g00017 Petunia axillaris HOM05D001081 ORTHO05D007101 2.6e-52 208.8 124 81.5
Ah.03g146510 Amaranthus hybridus HOM05D001081 ORTHO05D007101 3.3e-52 208.4 127 79.5
Sc13g0009920 Simmondsia chinensis HOM05D001081 ORTHO05D007101 3.3e-52 208.4 127 79.5
EL10Ac1g00785 Beta vulgaris HOM05D001081 ORTHO05D007101 4.4e-52 208.0 129 79.8
Duzib205G0894 Durio zibethinus HOM05D001081 ORTHO05D007101 4.4e-52 208.0 127 79.5
Eucgr.F01156 Eucalyptus grandis HOM05D001081 ORTHO05D007101 4.4e-52 208.0 126 78.6
Prupe.2G309800 Prunus persica HOM05D001081 ORTHO05D007101 7.4e-52 207.2 129 76.7
Duzib068G1165 Durio zibethinus HOM05D001081 ORTHO05D007101 9.7e-52 206.8 127 78.7
FAN10G3364 Fragaria x ananassa HOM05D001081 ORTHO05D007101 9.7e-52 206.8 127 78.7
FAN10G4231 Fragaria x ananassa HOM05D001081 ORTHO05D007101 9.7e-52 206.8 127 78.7
PGR083G2221 Punica granatum HOM05D001081 ORTHO05D007101 9.7e-52 206.8 126 78.6
Sed0024875 Sechium edule HOM05D001081 ORTHO05D007101 9.7e-52 206.8 127 78.7
DCAR_013886 Daucus carota HOM05D001081 ORTHO05D007101 1.3e-51 206.5 131 76.3
Gohir.A05G100100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 1.3e-51 206.5 127 78.0
Lj4g0009093 Lotus japonicus HOM05D001081 ORTHO05D007101 1.7e-51 206.1 127 77.2
Lj5g0017992 Lotus japonicus HOM05D001081 ORTHO05D007101 1.7e-51 206.1 127 78.0
Phvul.001G061700 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 2.2e-51 205.7 127 77.2
HanXRQChr14g0429651 Helianthus annuus HOM05D001081 ORTHO05D007101 2.8e-51 205.3 129 76.7
vmacro07565 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 2.8e-51 205.3 126 77.0
Ciclev10022846m.g Citrus clementina HOM05D001081 ORTHO05D007101 3.7e-51 204.9 127 78.0
COL.COLO4_16767 Corchorus olitorius HOM05D001081 ORTHO05D007101 3.7e-51 204.9 127 77.2
FvH4_7g31560 Fragaria vesca HOM05D001081 ORTHO05D007101 3.7e-51 204.9 127 78.0
FAN06G0656 Fragaria x ananassa HOM05D001081 ORTHO05D007101 3.7e-51 204.9 127 78.0
CANSAT21G1508 Cannabis sativa HOM05D001081 ORTHO05D007101 6.3e-51 204.1 127 78.7
Phvul.003G125501 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 6.3e-51 204.1 127 75.6
SalBow6G0310 Salvia bowleyana HOM05D001081 ORTHO05D007101 1.1e-50 203.4 130 76.2
Cc10_g01340 Coffea canephora HOM05D001081 ORTHO05D007101 1.4e-50 203.0 125 77.6
Psat7g080240 Pisum sativum HOM05D001081 ORTHO05D007101 1.4e-50 203.0 129 75.2
Solyc12g042700.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 1.8e-50 202.6 123 78.0
unitig_32.g11232 Utricularia gibba HOM05D001081 ORTHO05D007101 1.8e-50 202.6 129 76.7
FAN06G3917 Fragaria x ananassa HOM05D001081 ORTHO05D007101 2.4e-50 202.2 127 77.2
Migut.N03179 Erythranthe guttata HOM05D001081 ORTHO05D007101 3.1e-50 201.8 130 76.2
VMungo0251G0734 Vigna mungo HOM05D001081 ORTHO05D007101 4.1e-50 201.4 127 75.6
Lsat_1_v5_gn_2_7800 Lactuca sativa HOM05D000015 ORTHO05D002445 5.3e-50 201.1 126 76.2
RcHm_v2.0_Chr1g0380551 Rosa chinensis HOM05D001081 ORTHO05D007101 5.3e-50 201.1 127 76.4
TPR.G9557 Trifolium pratense HOM05D001081 ORTHO05D007101 5.3e-50 201.1 127 76.4
FAN01G2588 Fragaria x ananassa HOM05D001081 ORTHO05D007101 9.1e-50 200.3 127 76.4
Os05g0114600 Oryza sativa ssp. japonica HOM05D001081 ORTHO05D007101 9.1e-50 200.3 129 76.7
SGA_v2.0_scaffold19G08564 Striga asiatica HOM05D001081 ORTHO05D007101 1.6e-49 199.5 129 76.0
Atru.chr12.2201 Acer truncatum HOM05D001081 ORTHO05D007101 2.0e-49 199.1 128 75.0
MSTRG.22347 Avicennia marina HOM05D001081 ORTHO05D007101 2.6e-49 198.7 129 75.2
FAN03G0412 Fragaria x ananassa HOM05D001081 ORTHO05D007101 2.6e-49 198.7 127 76.4
MD07G1288300 Malus domestica HOM05D001081 ORTHO05D007101 2.6e-49 198.7 127 73.2
Zm00001eb355650 Zea mays HOM05D001081 ORTHO05D007101 3.5e-49 198.4 129 78.3
Manes.18G126800 Manihot esculenta HOM05D001081 ORTHO05D007101 4.5e-49 198.0 126 74.6
Potri.012G015800 Populus trichocarpa HOM05D001081 ORTHO05D007101 7.7e-49 197.2 127 73.2
Ca_18157_v3 Cicer arietinum L. HOM05D001081 ORTHO05D007101 1.0e-48 196.8 127 73.2
Potri.015G012700 Populus trichocarpa HOM05D001081 ORTHO05D007101 1.3e-48 196.4 127 73.2
SGA_v2.0_scaffold25G11207 Striga asiatica HOM05D001081 ORTHO05D007101 1.3e-48 196.4 129 74.4
Medtr8g079498 Medicago truncatula HOM05D001081 ORTHO05D007101 2.2e-48 195.7 128 75.0
THA.LOC104798899 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 2.2e-48 195.7 127 71.7
A01p13390 Brassica napus HOM05D001081 ORTHO05D007101 2.9e-48 195.3 127 74.0
BraA01t01281Z Brassica rapa HOM05D001081 ORTHO05D007101 2.9e-48 195.3 127 74.0
Thhalv10026223m.g Eutrema salsugineum HOM05D001081 ORTHO05D007101 3.8e-48 194.9 127 74.0
AL7G31700 Arabidopsis lyrata HOM05D001081 ORTHO05D007101 5.0e-48 194.5 127 74.0
Carub.0007s1934 Capsella rubella HOM05D001081 ORTHO05D007101 6.5e-48 194.1 127 73.2
BcaC09g51172 Brassica carinata HOM05D001081 ORTHO05D007101 8.5e-48 193.7 127 74.0
BcaNung05107 Brassica carinata HOM05D001081 ORTHO05D007101 8.5e-48 193.7 127 74.0
BolC1t01570H Brassica oleracea HOM05D001081 ORTHO05D007101 8.5e-48 193.7 127 74.0
C01p16100 Brassica napus HOM05D001081 ORTHO05D007101 1.1e-47 193.4 127 74.0
THA.LOC104823111 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 1.1e-47 193.4 127 70.9
AT4G22000 Arabidopsis thaliana HOM05D001081 ORTHO05D007101 1.9e-47 192.6 127 73.2
Sp7g20190 Schrenkiella parvula HOM05D001081 ORTHO05D007101 1.9e-47 192.6 127 73.2
HPP92_008968 Vanilla planifolia HOM05D001081 ORTHO05D007101 2.5e-47 192.2 111 80.2
CDE11G0170 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 4.7e-46 188.0 127 74.8
Atru.chr9.478 Acer truncatum HOM05D001081 ORTHO05D007101 6.1e-46 187.6 128 70.3
SHI02421 Sapria himalayana HOM05D006156 ORTHO05D007101 6.1e-46 187.6 124 71.8
Aa31LG6G3950 Aethionema arabicum HOM05D001081 ORTHO05D007101 1.4e-45 186.4 127 70.1
CARHR228810 Cardamine hirsuta HOM05D001081 ORTHO05D007101 1.4e-45 186.4 128 71.9
AUR62013725 Chenopodium quinoa HOM05D001081 ORTHO05D007101 1.2e-44 183.3 106 84.0
MSTRG.25269 Avicennia marina HOM05D001081 ORTHO05D007101 1.8e-42 176.0 172 55.8
SEGI_15379 Sequoiadendron giganteum HOM05D001081 ORTHO05D007101 3.1e-42 175.3 127 70.1
ATR1134G096 Amborella trichopoda HOM05D001081 ORTHO05D007101 4.5e-41 171.4 112 75.0
BcaB03g11721 Brassica carinata HOM05D001081 ORTHO05D007101 1.7e-35 152.9 104 74.0
CSS0017659 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 2.8e-35 152.1 82 86.6
ClCG05G008950 Citrullus lanatus HOM05D001081 ORTHO05D007101 2.4e-34 149.1 87 83.9
Actinidia17007 Actinidia chinensis HOM05D001081 ORTHO05D007101 3.1e-34 148.7 82 81.7
Solyc12g042720.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 9.5e-31 137.1 76 85.5
Dinv31879 Davidia involucrata HOM05D001081 ORTHO05D007101 5.7e-28 127.9 80 77.5
Mapoly0012s0096 Marchantia polymorpha HOM05D001081 ORTHO05D007101 5.4e-26 121.3 103 59.2
SMO356G0374 Selaginella moellendorffii HOM05D001081 ORTHO05D007101 9.2e-26 120.6 88 63.6
Pp3c15_6340 Physcomitrium patens HOM05D001081 ORTHO05D007101 4.5e-25 118.2 89 65.2
CSS0023065 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 8.6e-24 114.0 61 88.5
Gorai.006G039100 Gossypium raimondii HOM05D001081 ORTHO05D007101 8.6e-24 114.0 127 52.8
CSS0034162 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 2.1e-22 109.4 59 88.1
Gohir.A09G033580 Gossypium hirsutum HOM05D001081 ORTHO05D007101 1.5e-20 103.2 67 74.6
Gohir.D09G034100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 6.4e-19 97.8 67 71.6
Nitab4.5_0001077g0030 Nicotiana tabacum HOM05D012963 ORTHO05D007101 4.1e-18 95.1 82 53.7
CBR_g8977 Chara braunii HOM05D001081 ORTHO05D007101 5.6e-15 84.7 97 47.4
Zm00001eb266390 Zea mays HOM05D001081 ORTHO05D007101 8.0e-14 80.9 114 48.2
arahy.Tifrunner.gnm1.ann1.EUX55C Arachis hypogaea HOM05D001081 ORTHO05D007101 1.1e-13 80.5 51 76.5
Nitab4.5_0002544g0090 Nicotiana tabacum HOM05D001081 ORTHO05D007101 1.6e-09 66.6 40 72.5
DCAR_016735 Daucus carota HOM05D001081 ORTHO05D007101 2.3e-08 62.8 59 47.5
Nitab4.5_0011266g0010 Nicotiana tabacum HOM05D002996 ORTHO05D025899 8.6e-08 60.8 50 68.0
Actinidia15449 Actinidia chinensis HOM05D001081 ORTHO05D007101 3.3e-07 58.9 36 72.2
Nitab4.5_0005166g0030 Nicotiana tabacum HOM05D001081 ORTHO05D025899 5.6e-07 58.2 50 66.0
Nitab4.5_0008435g0040 Nicotiana tabacum HOM05D002996 ORTHO05D025899 1.2e-06 57.0 50 66.0
Nitab4.5_0026266g0010 Nicotiana tabacum HOM05D002996 ORTHO05D025899 3.6e-06 55.5 50 66.0


User provided reference genes

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