Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G4728 Papaver somniferum HOM05D005001 ORTHO05D005796 0.0e+00 1678.7 906 100.0
PSO675G2514 Papaver somniferum HOM05D005001 ORTHO05D005796 0.0e+00 1466.4 908 84.7
TAR628G1461 Trochodendron aralioides HOM05D005001 ORTHO05D005796 6.6e-171 605.5 942 44.8
Aqoxy5G01010 Aquilegia oxysepala HOM05D005001 ORTHO05D005796 5.8e-151 539.3 937 42.2
Nn6g31704 Nelumbo nucifera HOM05D005001 ORTHO05D005796 2.9e-142 510.4 919 40.5
Nn5g30991 Nelumbo nucifera HOM05D005001 ORTHO05D005796 3.1e-136 490.3 921 40.0
Dinv40189 Davidia involucrata HOM05D005001 ORTHO05D005796 3.8e-134 483.4 952 39.4
Dinv08162 Davidia involucrata HOM05D005001 ORTHO05D005796 1.1e-133 481.9 941 39.6
Atru.chr3.132 Acer truncatum HOM05D005001 ORTHO05D005796 9.3e-133 478.8 935 39.4
Ciclev10024851m.g Citrus clementina HOM05D005001 ORTHO05D005796 4.6e-132 476.5 951 38.9
MBI08_g12258_MAGBIO Magnolia biondii HOM05D005001 ORTHO05D005796 4.3e-130 469.9 998 37.0
CSS0006057 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 3.7e-129 466.8 938 39.0
Gohir.D03G002000 Gossypium hirsutum HOM05D005001 ORTHO05D005796 3.7e-129 466.8 937 37.8
Duzib147G1512 Durio zibethinus HOM05D005001 ORTHO05D005796 6.2e-129 466.1 947 37.9
PSO210G6136 Papaver somniferum HOM05D005001 ORTHO05D005796 6.2e-129 466.1 969 38.5
Gorai.003G002300 Gossypium raimondii HOM05D005001 ORTHO05D005796 8.1e-129 465.7 941 37.7
PSO761G0634 Papaver somniferum HOM05D005001 ORTHO05D005796 8.1e-129 465.7 967 38.4
Cc07_g11880 Coffea canephora HOM05D005001 ORTHO05D005796 9.0e-128 462.2 945 37.6
Gohir.A02G177800 Gossypium hirsutum HOM05D005001 ORTHO05D005796 5.8e-127 459.5 943 37.6
Actinidia22897 Actinidia chinensis HOM05D005001 ORTHO05D005796 6.5e-126 456.1 940 37.9
QL06p052982 Quercus lobata HOM05D005001 ORTHO05D005796 1.2e-124 451.8 949 38.7
Cfa007079 Carpinus fangiana HOM05D005001 ORTHO05D005796 2.1e-124 451.1 946 38.8
COL.COLO4_22551 Corchorus olitorius HOM05D005001 ORTHO05D005796 7.9e-124 449.1 916 38.0
ClCG10G000290 Citrullus lanatus HOM05D005001 ORTHO05D005796 3.0e-123 447.2 930 36.9
Sabra05G0084100 Salix brachista HOM05D005001 ORTHO05D005796 3.0e-123 447.2 954 38.3
Cpa.g.sc6.369 Carica papaya HOM05D005001 ORTHO05D005796 1.9e-122 444.5 952 36.7
Actinidia17358 Actinidia chinensis HOM05D005001 ORTHO05D005796 1.6e-121 441.4 947 37.9
CSS0002200 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 6.3e-121 439.5 939 37.8
Manes.01G155500 Manihot esculenta HOM05D005001 ORTHO05D005796 8.2e-121 439.1 952 38.1
Potri.005G101700 Populus trichocarpa HOM05D005001 ORTHO05D005796 1.1e-120 438.7 960 37.9
CsaV3_3G000320 Cucumis sativus L. HOM05D005001 ORTHO05D005796 2.6e-119 434.1 935 36.4
Thecc.01G005400 Theobroma cacao HOM05D005001 ORTHO05D005796 2.2e-118 431.0 905 37.5
Prupe.7G183200 Prunus persica HOM05D005001 ORTHO05D005796 3.8e-118 430.3 935 38.1
FAN26G0131 Fragaria x ananassa HOM05D005001 ORTHO05D005796 5.0e-118 429.9 948 37.4
RcHm_v2.0_Chr2g0097131 Rosa chinensis HOM05D005001 ORTHO05D005796 6.5e-118 429.5 944 38.1
FvH4_1g10290 Fragaria vesca HOM05D005001 ORTHO05D005796 1.4e-117 428.3 948 37.3
Manes.02G114100 Manihot esculenta HOM05D005001 ORTHO05D005796 1.4e-117 428.3 943 37.0
FAN19G0848 Fragaria x ananassa HOM05D005001 ORTHO05D005796 1.9e-117 427.9 944 37.4
GSVIVG01026639001 Vitis vinifera HOM05D005001 ORTHO05D005796 1.6e-116 424.9 914 37.6
Lj2C499T6 Lonicera japonica HOM05D005001 ORTHO05D005796 2.1e-116 424.5 906 37.2
MSTRG.3631 Avicennia marina HOM05D005001 ORTHO05D005796 6.1e-116 422.9 965 36.5
CiPaw.07G002600 Carya illinoinensis HOM05D005001 ORTHO05D005796 7.9e-116 422.5 938 36.1
Haze_03653 Corylus avellana HOM05D005001 ORTHO05D005796 3.0e-115 420.6 919 38.1
Migut.L00777 Erythranthe guttata HOM05D005001 ORTHO05D005796 3.0e-115 420.6 930 36.3
Rhsim10G0195500 Rhododendron simsii HOM05D005001 ORTHO05D005796 1.5e-114 418.3 940 36.9
MD15G1231000 Malus domestica HOM05D005001 ORTHO05D005796 2.5e-114 417.5 920 37.7
Sed0016412 Sechium edule HOM05D005001 ORTHO05D005796 3.3e-114 417.2 934 35.4
Glyma.11G086000 Glycine max HOM05D005001 ORTHO05D005796 4.3e-114 416.8 936 36.6
Glyma.01G158600 Glycine max HOM05D005001 ORTHO05D005796 9.7e-114 415.6 942 36.6
TWI09G0186 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 9.7e-114 415.6 938 36.7
Peaxi162Scf01475g00020 Petunia axillaris HOM05D005001 ORTHO05D005796 1.4e-112 411.8 943 36.8
Solyc02g082680.4 Solanum lycopersicum HOM05D005001 ORTHO05D005796 2.4e-112 411.0 940 36.7
Oeu042477.2 Olea europaea HOM05D005001 ORTHO05D005796 1.2e-111 408.7 896 36.6
Phvul.002G116700 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 2.0e-111 407.9 941 35.9
Sopen02g027420 Solanum pennellii HOM05D005001 ORTHO05D005796 2.0e-111 407.9 940 36.3
vmacro20631 Vaccinium macrocarpon HOM05D005001 ORTHO05D005796 2.2e-110 404.4 920 36.8
PGSC0003DMG400001566 Solanum tuberosum HOM05D005001 ORTHO05D005796 1.1e-109 402.1 922 37.0
Nitab4.5_0001467g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 1.4e-109 401.7 945 36.4
Lj2g0010904 Lotus japonicus HOM05D005001 ORTHO05D005796 2.5e-109 401.0 932 35.2
MELO3C013726.2 Cucumis melo HOM05D005001 ORTHO05D005796 9.4e-109 399.1 879 35.0
Nitab4.5_0004608g0060 Nicotiana tabacum HOM05D005001 ORTHO05D005796 1.6e-108 398.3 948 35.9
arahy.Tifrunner.gnm1.ann1.1YR532 Arachis hypogaea HOM05D005001 ORTHO05D005796 2.1e-108 397.9 943 36.2
arahy.Tifrunner.gnm1.ann1.XJ0R0A Arachis hypogaea HOM05D005001 ORTHO05D005796 2.1e-108 397.9 943 36.2
SalBow3G4537 Salvia bowleyana HOM05D005001 ORTHO05D005796 2.7e-108 397.5 924 36.8
SalBow3G0770 Salvia bowleyana HOM05D005001 ORTHO05D005796 6.1e-108 396.4 924 36.7
CSS0020393 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 1.0e-107 395.6 899 37.2
CANSAT25G0747 Cannabis sativa HOM05D005001 ORTHO05D005796 3.9e-107 393.7 930 36.1
DCAR_002956 Daucus carota HOM05D005001 ORTHO05D005796 2.0e-106 391.3 903 36.3
MD02G1115000 Malus domestica HOM05D005001 ORTHO05D005796 9.7e-106 389.0 918 36.2
VMungo1215G1172 Vigna mungo HOM05D005001 ORTHO05D005796 9.7e-106 389.0 922 35.6
TWI53G0117 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 2.2e-105 387.9 879 35.7
FAN23G2126 Fragaria x ananassa HOM05D005001 ORTHO05D005796 3.8e-102 377.1 932 35.7
Gorai.001G199100 Gossypium raimondii HOM05D005001 ORTHO05D005796 5.0e-102 376.7 1015 33.3
Lsat_1_v5_gn_3_67981 Lactuca sativa HOM05D005001 ORTHO05D005796 8.5e-102 375.9 912 35.6
SalBow5G1781 Salvia bowleyana HOM05D005001 ORTHO05D005796 1.5e-98 365.2 912 35.4
EL10Ac6g15057 Beta vulgaris HOM05D005001 ORTHO05D005796 3.7e-97 360.5 945 35.2
Lalb_Chr05g0214801 Lupinus albus HOM05D005001 ORTHO05D005796 3.1e-96 357.5 928 35.1
Psat2g148080 Pisum sativum HOM05D005001 ORTHO05D005796 3.1e-96 357.5 927 34.4
Ah.02g122920 Amaranthus hybridus HOM05D005001 ORTHO05D005796 4.1e-96 357.1 953 34.0
CiPaw.08G181700 Carya illinoinensis HOM05D005001 ORTHO05D005796 1.0e-94 352.4 894 36.1
TPR.G33869 Trifolium pratense HOM05D005001 ORTHO05D005796 5.0e-94 350.1 924 33.9
ECA246G0522 Erigeron canadensis HOM05D005001 ORTHO05D005796 8.5e-94 349.4 785 35.4
Medtr5g024240 Medicago truncatula HOM05D005001 ORTHO05D005796 4.2e-93 347.1 926 33.6
Ca_24983_v3 Cicer arietinum L. HOM05D005001 ORTHO05D005796 1.2e-92 345.5 945 33.2
MBI05_g14348_MAGBIO Magnolia biondii HOM05D005001 ORTHO05D005796 1.2e-92 345.5 893 33.9
AUR62003748 Chenopodium quinoa HOM05D005001 ORTHO05D005796 6.1e-92 343.2 1002 31.7
Hund03602 Selenicereus undatus HOM05D005001 ORTHO05D005796 6.1e-92 343.2 1017 32.1
Peaxi162Scf00122g02417 Petunia axillaris HOM05D005001 ORTHO05D005796 5.2e-91 340.1 852 34.9
AUR62002047 Chenopodium quinoa HOM05D005001 ORTHO05D005796 7.5e-90 336.3 1002 31.5
Glyma.16G116100 Glycine max HOM05D005001 ORTHO05D005796 3.7e-89 334.0 935 32.6
Eucgr.J02537 Eucalyptus grandis HOM05D005001 ORTHO05D005796 3.5e-87 327.4 620 40.8
HanXRQChr16g0531881 Helianthus annuus HOM05D005001 ORTHO05D005796 4.5e-87 327.0 913 33.1
Sopen03g005960 Solanum pennellii HOM05D005001 ORTHO05D005796 5.9e-87 326.6 896 33.7
PGR119G1974 Punica granatum HOM05D005001 ORTHO05D005796 4.2e-85 320.5 868 34.4
Solyc03g032110.3 Solanum lycopersicum HOM05D005001 ORTHO05D005796 4.2e-85 320.5 918 33.1
Lalb_Chr16g0380031 Lupinus albus HOM05D005001 ORTHO05D005796 7.2e-85 319.7 665 38.3
PGSC0003DMG400018683 Solanum tuberosum HOM05D005001 ORTHO05D005796 1.2e-84 318.9 920 33.7
Nitab4.5_0005297g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 7.5e-82 309.7 862 32.8
Glyma.09G198000 Glycine max HOM05D005001 ORTHO05D005796 2.2e-81 308.1 906 32.6
Gohir.A07G171200 Gossypium hirsutum HOM05D005001 ORTHO05D005796 8.3e-81 306.2 678 36.1
THA.LOC104804295 Tarenaya hassleriana HOM05D005001 ORTHO05D005796 2.4e-80 304.7 911 32.8
Phvul.003G270200 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 5.4e-80 303.5 931 31.5
Nitab4.5_0000495g0110 Nicotiana tabacum HOM05D005001 ORTHO05D005796 3.5e-79 300.8 854 32.2
AL3G50520 Arabidopsis lyrata HOM05D005001 ORTHO05D005796 5.9e-79 300.1 926 32.2
ATR0807G148 Amborella trichopoda HOM05D005001 ORTHO05D005796 1.5e-77 295.4 893 32.0
Carub.0003s3164 Capsella rubella HOM05D005001 ORTHO05D005796 2.1e-76 291.6 935 32.1
AT2G17550 Arabidopsis thaliana HOM05D005001 ORTHO05D005796 3.6e-76 290.8 935 31.8
Thhalv10022564m.g Eutrema salsugineum HOM05D005001 ORTHO05D005796 8.0e-76 289.7 934 32.0
SGA_v2.0_scaffold41G15753 Striga asiatica HOM05D005001 ORTHO05D005796 8.0e-76 289.7 906 33.1
Gohir.D07G178000 Gossypium hirsutum HOM05D005001 ORTHO05D005796 7.5e-74 283.1 711 34.2
VMungo0251G3365 Vigna mungo HOM05D005001 ORTHO05D005796 1.7e-73 282.0 932 30.5
A07p03420 Brassica napus HOM05D005001 ORTHO05D005796 2.8e-73 281.2 924 30.7
BraA07t28140Z Brassica rapa HOM05D005001 ORTHO05D005796 2.8e-73 281.2 924 30.7
C07p05710 Brassica napus HOM05D005001 ORTHO05D005796 1.8e-72 278.5 919 30.6
BolC7t40970H Brassica oleracea HOM05D005001 ORTHO05D005796 1.8e-72 278.5 919 30.6
Os03g0130700 Oryza sativa ssp. japonica HOM05D005001 ORTHO05D005796 2.4e-72 278.1 960 30.0
BcaC06g36289 Brassica carinata HOM05D005001 ORTHO05D005796 3.5e-71 274.2 922 30.6
Sc03g0003960 Simmondsia chinensis HOM05D005001 ORTHO05D005796 1.0e-70 272.7 618 38.7
BcaB03g16525 Brassica carinata HOM05D005001 ORTHO05D005796 4.3e-69 267.3 931 30.5
Sp3g30910 Schrenkiella parvula HOM05D005001 ORTHO05D005796 1.6e-68 265.4 928 30.8
Zm00001eb002440 Zea mays HOM05D005001 ORTHO05D005796 1.6e-68 265.4 962 28.8
Hund19695 Selenicereus undatus HOM05D005001 ORTHO05D005796 3.6e-68 264.2 948 30.6
CARHR107730 Cardamine hirsuta HOM05D005001 ORTHO05D005796 1.3e-65 255.8 929 31.0
HPP92_007108 Vanilla planifolia HOM05D005001 ORTHO05D005796 2.1e-60 238.4 969 28.4
Aa31LG8G14850 Aethionema arabicum HOM05D005001 ORTHO05D005796 6.8e-59 233.4 916 28.9
Lj4g0000674 Lotus japonicus HOM05D005001 ORTHO05D005796 3.5e-55 221.1 899 29.1
THA.LOC104819718 Tarenaya hassleriana HOM05D005001 ORTHO05D005796 2.3e-46 191.8 912 27.9
Lj4A237T62 Lonicera japonica HOM05D005001 ORTHO05D005796 1.6e-44 185.7 521 35.1
arahy.Tifrunner.gnm1.ann1.3933SP Arachis hypogaea HOM05D005001 ORTHO05D005796 4.6e-39 167.5 903 26.1
Os06g0728200 Oryza sativa ssp. japonica HOM05D005001 ORTHO05D005796 1.4e-24 119.4 951 25.6
HPP92_022688 Vanilla planifolia HOM05D005001 ORTHO05D005796 3.5e-23 114.8 366 29.5
unitig_37.g12434 Utricularia gibba HOM05D005001 ORTHO05D005796 6.0e-23 114.0 464 27.2
unitig_37.g12435 Utricularia gibba HOM05D005001 ORTHO05D005796 1.1e-21 109.8 319 33.9
FAN28G2205 Fragaria x ananassa HOM05D005001 ORTHO05D005796 8.1e-20 103.6 181 38.1
HPP92_022687 Vanilla planifolia HOM05D005001 ORTHO05D005796 2.6e-18 98.6 409 28.6
Lj4P237T25 Lonicera japonica HOM05D005001 ORTHO05D005796 7.1e-16 90.5 203 35.5
Medtr5g025350 Medicago truncatula HOM05D005001 ORTHO05D005796 9.3e-16 90.1 138 42.8
arahy.Tifrunner.gnm1.ann1.8C07DS Arachis hypogaea HOM05D005001 ORTHO05D005796 1.1e-13 83.2 497 26.2
CDE05G1993 Ceratophyllum demersum HOM05D005001 ORTHO05D005796 4.3e-13 81.3 469 26.0
SEGI_23141 Sequoiadendron giganteum HOM05D002769 ORTHO05D001913 5.6e-13 80.9 146 38.4
Lalb_Chr16g0380041 Lupinus albus HOM05D005001 ORTHO05D005796 1.1e-11 76.6 225 32.0
PGSC0003DMG400018957 Solanum tuberosum HOM05D002769 ORTHO05D003160 4.9e-09 67.8 606 24.3
VMungo0720G0231 Vigna mungo HOM05D002515 ORTHO05D002722 1.1e-08 66.6 150 29.3
ECA236G1034 Erigeron canadensis HOM05D002515 ORTHO05D005057 2.5e-08 65.5 156 30.8
Eucgr.J02056 Eucalyptus grandis HOM05D002515 ORTHO05D002722 2.5e-08 65.5 148 31.1
SEGI_29651 Sequoiadendron giganteum HOM05D002769 ORTHO05D003160 4.2e-08 64.7 505 23.6
Pp3c9_5030 Physcomitrium patens HOM05D031362 ORTHO05D002722 1.2e-07 63.2 212 32.5
CSS0005557 Camellia sinensis var. sinensis HOM05D002769 ORTHO05D003160 7.9e-07 60.5 107 35.5
Pp3c15_3050 Physcomitrium patens HOM05D031362 ORTHO05D002722 1.0e-06 60.1 256 28.5
TAR633G1102 Trochodendron aralioides HOM05D002515 ORTHO05D002722 1.8e-06 59.3 118 32.2
ATR0787G113 Amborella trichopoda HOM05D002769 ORTHO05D003160 3.0e-06 58.5 113 31.9
CSS0028630 Camellia sinensis var. sinensis HOM05D002515 ORTHO05D002722 3.9e-06 58.2 118 33.9
DCAR_018538 Daucus carota HOM05D002769 ORTHO05D003160 3.9e-06 58.2 306 25.2
Lalb_Chr03g0036731 Lupinus albus HOM05D002515 ORTHO05D002722 3.9e-06 58.2 118 31.4
PSO384G3367 Papaver somniferum HOM05D002515 ORTHO05D002722 3.9e-06 58.2 238 27.3
Haze_20717 Corylus avellana HOM05D002036 ORTHO05D001913 5.1e-06 57.8 145 30.3
Duzib168G0968 Durio zibethinus HOM05D002515 ORTHO05D002722 5.1e-06 57.8 117 30.8
Eucgr.H00827 Eucalyptus grandis HOM05D002769 ORTHO05D003160 6.7e-06 57.4 115 33.9
Cfa017446 Carpinus fangiana HOM05D002036 ORTHO05D001913 8.7e-06 57.0 128 32.0
CiPaw.09G187300 Carya illinoinensis HOM05D002036 ORTHO05D001913 8.7e-06 57.0 81 34.6
FAN11G3380 Fragaria x ananassa HOM05D002515 ORTHO05D002722 8.7e-06 57.0 126 33.3
PSO339G4477 Papaver somniferum HOM05D002515 ORTHO05D002722 8.7e-06 57.0 238 26.9
Psat6g068640 Pisum sativum HOM05D002036 ORTHO05D001913 8.7e-06 57.0 73 39.7


User provided reference genes

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