Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G4622 Papaver somniferum HOM05D006200 ORTHO05D007569 1.9e-59 232.3 112 100.0
PSO675G7132 Papaver somniferum HOM05D006200 ORTHO05D007569 3.9e-57 224.6 112 97.3
PGSC0003DMG400006126 Solanum tuberosum HOM05D006200 ORTHO05D007569 3.2e-51 204.9 112 84.8
Sopen07g024150 Solanum pennellii HOM05D006200 ORTHO05D007569 5.5e-51 204.1 112 84.8
Hma1.2p1_0545F.1_g176060 Hydrangea macrophylla HOM05D006200 ORTHO05D007569 7.1e-51 203.8 112 83.9
Solyc07g047700.4 Solanum lycopersicum HOM05D006200 ORTHO05D007569 7.1e-51 203.8 112 83.9
Prupe.3G200400 Prunus persica HOM05D006200 ORTHO05D007569 9.3e-51 203.4 112 83.0
Atru.chr6.3355 Acer truncatum HOM05D006200 ORTHO05D007569 1.6e-50 202.6 112 83.9
MD09G1123700 Malus domestica HOM05D006200 ORTHO05D007569 2.7e-50 201.8 112 83.0
TWI36G1668 Tripterygium wilfordii HOM05D006200 ORTHO05D007569 6.0e-50 200.7 112 82.1
CAN.G1036.6 Capsicum annuum HOM05D006200 ORTHO05D007569 7.9e-50 200.3 112 83.0
QL08p028355 Quercus lobata HOM05D006200 ORTHO05D007569 1.0e-49 199.9 111 82.0
Cfa014235 Carpinus fangiana HOM05D000160 ORTHO05D000496 1.3e-49 199.5 112 82.1
HPP92_012226 Vanilla planifolia HOM05D006200 ORTHO05D007569 1.8e-49 199.1 112 83.0
Rhsim04G0037800 Rhododendron simsii HOM05D006200 ORTHO05D007569 2.3e-49 198.7 112 82.1
Dinv05360 Davidia involucrata HOM05D006200 ORTHO05D007569 3.0e-49 198.4 112 82.1
FvH4_6g40890 Fragaria vesca HOM05D006200 ORTHO05D007569 3.9e-49 198.0 112 82.1
MD17G1114500 Malus domestica HOM05D006200 ORTHO05D007569 3.9e-49 198.0 112 82.1
Potri.014G164500 Populus trichocarpa HOM05D006200 ORTHO05D007569 3.9e-49 198.0 112 80.4
Sed0007295 Sechium edule HOM05D006200 ORTHO05D007569 3.9e-49 198.0 112 83.9
MSTRG.14921 Avicennia marina HOM05D006200 ORTHO05D007569 5.1e-49 197.6 112 80.4
Haze_12649 Corylus avellana HOM05D006200 ORTHO05D007569 5.1e-49 197.6 112 82.1
arahy.Tifrunner.gnm1.ann1.GBED9Y Arachis hypogaea HOM05D006200 ORTHO05D007569 6.7e-49 197.2 112 82.1
Carub.0003s2650 Capsella rubella HOM05D006200 ORTHO05D007569 6.7e-49 197.2 112 81.2
Hma1.2p1_2053F.1_g312740 Hydrangea macrophylla HOM05D006200 ORTHO05D007569 8.7e-49 196.8 112 80.4
Nitab4.5_0001774g0080 Nicotiana tabacum HOM05D006200 ORTHO05D007569 8.7e-49 196.8 112 82.1
CANSAT64G0383 Cannabis sativa HOM05D006200 ORTHO05D007569 1.1e-48 196.4 112 81.2
FAN02G1931 Fragaria x ananassa HOM05D006200 ORTHO05D007569 1.1e-48 196.4 112 81.2
Lalb_Chr04g0250001 Lupinus albus HOM05D006200 ORTHO05D007569 1.1e-48 196.4 112 81.2
Aqoxy4G02230 Aquilegia oxysepala HOM05D006200 ORTHO05D007569 1.5e-48 196.1 112 82.1
Rhsim02G0017500 Rhododendron simsii HOM05D006200 ORTHO05D007569 1.5e-48 196.1 112 80.4
ATR0624G019 Amborella trichopoda HOM05D006200 ORTHO05D007569 1.9e-48 195.7 112 82.1
LjContig00029g0002447 Lotus japonicus HOM05D006200 ORTHO05D007569 2.5e-48 195.3 112 80.4
Nn1g07469 Nelumbo nucifera HOM05D006200 ORTHO05D007569 2.5e-48 195.3 112 80.4
AT2G04900 Arabidopsis thaliana HOM05D006200 ORTHO05D007569 3.3e-48 194.9 112 82.1
ClCG02G002790 Citrullus lanatus HOM05D006200 ORTHO05D007569 3.3e-48 194.9 112 81.2
Glyma.14G048700 Glycine max HOM05D006200 ORTHO05D007569 3.3e-48 194.9 112 80.4
AL3G42530 Arabidopsis lyrata HOM05D006200 ORTHO05D007569 4.3e-48 194.5 112 82.1
A07p06630 Brassica napus HOM05D006200 ORTHO05D007569 4.3e-48 194.5 112 81.2
SGA_v2.0_scaffold181G39681 Striga asiatica HOM05D006200 ORTHO05D007569 4.3e-48 194.5 112 80.4
THA.LOC104815354 Tarenaya hassleriana HOM05D006200 ORTHO05D007569 4.3e-48 194.5 112 81.2
BcaB06g26789 Brassica carinata HOM05D006200 ORTHO05D007569 5.7e-48 194.1 112 81.2
C07p10040 Brassica napus HOM05D006200 ORTHO05D007569 5.7e-48 194.1 112 81.2
BraA07t28456Z Brassica rapa HOM05D006200 ORTHO05D007569 5.7e-48 194.1 112 81.2
Cc05_g02100 Coffea canephora HOM05D006200 ORTHO05D007569 5.7e-48 194.1 112 81.2
Thhalv10002727m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 5.7e-48 194.1 112 81.2
CDE07G1212 Ceratophyllum demersum HOM05D006200 ORTHO05D007569 7.4e-48 193.7 112 79.5
CSS0021565 Camellia sinensis var. sinensis HOM05D006200 ORTHO05D007569 9.7e-48 193.4 112 77.7
Migut.M00041 Erythranthe guttata HOM05D006200 ORTHO05D007569 9.7e-48 193.4 112 79.5
RcHm_v2.0_Chr2g0156461 Rosa chinensis HOM05D006200 ORTHO05D007569 9.7e-48 193.4 112 81.2
Sp3g23500 Schrenkiella parvula HOM05D006200 ORTHO05D007569 9.7e-48 193.4 112 80.4
Ciclev10017136m.g Citrus clementina HOM05D006200 ORTHO05D007569 1.3e-47 193.0 112 77.7
Glyma.02G268700 Glycine max HOM05D006200 ORTHO05D007569 1.3e-47 193.0 112 79.5
BcaC06g35887 Brassica carinata HOM05D006200 ORTHO05D007569 1.6e-47 192.6 112 80.4
BolC7t41451H Brassica oleracea HOM05D006200 ORTHO05D007569 1.6e-47 192.6 112 80.4
TAR626G0047 Trochodendron aralioides HOM05D006200 ORTHO05D007569 1.6e-47 192.6 112 79.5
Manes.13G063700 Manihot esculenta HOM05D006200 ORTHO05D007569 2.2e-47 192.2 112 80.4
MELO3C024201.2 Cucumis melo HOM05D006200 ORTHO05D007569 2.8e-47 191.8 117 78.6
SalBow7G0450 Salvia bowleyana HOM05D006200 ORTHO05D007569 2.8e-47 191.8 112 76.8
Actinidia09782 Actinidia chinensis HOM05D006200 ORTHO05D007569 3.7e-47 191.4 112 77.7
CiPaw.04G196600 Carya illinoinensis HOM05D006200 ORTHO05D007569 3.7e-47 191.4 112 79.5
Cc02_g04700 Coffea canephora HOM05D006200 ORTHO05D007569 3.7e-47 191.4 112 79.5
Lsat_1_v5_gn_5_121761 Lactuca sativa HOM05D006200 ORTHO05D007569 1.4e-46 189.5 112 76.8
Medtr5g085420 Medicago truncatula HOM05D006200 ORTHO05D007569 1.4e-46 189.5 112 78.6
Psat2g026360 Pisum sativum HOM05D006200 ORTHO05D007569 1.4e-46 189.5 112 77.7
Os03g0751000 Oryza sativa ssp. japonica HOM05D006200 ORTHO05D007569 1.8e-46 189.1 111 80.2
Peaxi162Scf00776g00024 Petunia axillaris HOM05D006200 ORTHO05D007569 1.8e-46 189.1 112 78.6
Oeu040457.1 Olea europaea HOM05D006200 ORTHO05D007569 3.1e-46 188.3 112 76.8
FAN09G2038 Fragaria x ananassa HOM05D006200 ORTHO05D007569 4.1e-46 188.0 127 72.4
CARHR102920 Cardamine hirsuta HOM05D006200 ORTHO05D007569 6.9e-46 187.2 112 77.7
Sed0012997 Sechium edule HOM05D006200 ORTHO05D007569 9.0e-46 186.8 110 80.0
FAN05G3226 Fragaria x ananassa HOM05D006200 ORTHO05D007569 1.2e-45 186.4 127 71.7
FAN14G5749 Fragaria x ananassa HOM05D006200 ORTHO05D007569 1.2e-45 186.4 127 71.7
HanXRQChr10g0306841 Helianthus annuus HOM05D006200 ORTHO05D007569 1.5e-45 186.0 112 75.9
TPR.G25628 Trifolium pratense HOM05D006200 ORTHO05D007569 5.9e-45 184.1 112 76.8
Zm00001eb057520 Zea mays HOM05D006200 ORTHO05D007569 7.6e-45 183.7 111 78.4
Cpa.g.sc136.18 Carica papaya HOM05D006200 ORTHO05D007569 6.5e-44 180.6 112 74.1
vmacro09406 Vaccinium macrocarpon HOM05D006200 ORTHO05D007569 6.5e-44 180.6 145 62.8
Thecc.01G190500 Theobroma cacao HOM05D006200 ORTHO05D007569 8.5e-44 180.3 112 72.3
Aa31sc107G30 Aethionema arabicum HOM05D006200 ORTHO05D007569 5.5e-43 177.6 141 63.1
Manes.12G061800 Manihot esculenta HOM05D006200 ORTHO05D007569 5.5e-43 177.6 112 76.8
CSS0018696 Camellia sinensis var. sinensis HOM05D006200 ORTHO05D007569 2.7e-42 175.3 100 80.0
Duzib138G0810 Durio zibethinus HOM05D006200 ORTHO05D007569 4.6e-42 174.5 112 70.5
Sabra14G0125300 Salix brachista HOM05D006200 ORTHO05D007569 4.6e-42 174.5 139 61.9
Gohir.A07G167000 Gossypium hirsutum HOM05D006200 ORTHO05D007569 2.3e-41 172.2 112 69.6
Gohir.D07G172300 Gossypium hirsutum HOM05D006200 ORTHO05D007569 2.3e-41 172.2 112 69.6
Gorai.001G192600 Gossypium raimondii HOM05D006200 ORTHO05D007569 2.3e-41 172.2 112 69.6
Lj8A134G80 Lonicera japonica HOM05D006200 ORTHO05D007569 3.0e-41 171.8 98 81.6
SEGI_07661 Sequoiadendron giganteum HOM05D006200 ORTHO05D007569 3.0e-41 171.8 112 72.3
GSVIVG01030518001 Vitis vinifera HOM05D006200 ORTHO05D007569 3.9e-41 171.4 107 72.9
GSVIVG01030523001 Vitis vinifera HOM05D006200 ORTHO05D007569 3.9e-41 171.4 107 72.9
Zm00001eb181090 Zea mays HOM05D006200 ORTHO05D007569 1.9e-40 169.1 106 75.5
AUR62029092 Chenopodium quinoa HOM05D006200 ORTHO05D007569 1.7e-39 166.0 96 79.2
ECA234G3013 Erigeron canadensis HOM05D006200 ORTHO05D007569 4.8e-39 164.5 98 76.5
Eucgr.A01040 Eucalyptus grandis HOM05D006200 ORTHO05D007569 4.1e-38 161.4 98 75.5
Zm00001eb025380 Zea mays HOM05D006200 ORTHO05D007569 1.2e-37 159.8 126 63.5
COL.COLO4_33018 Corchorus olitorius HOM05D006200 ORTHO05D007569 1.3e-36 156.4 155 50.3
MBI16_g28733_MAGBIO Magnolia biondii HOM05D006200 ORTHO05D007569 5.0e-36 154.5 99 71.7
Phvul.008G213600 Phaseolus vulgaris HOM05D006200 ORTHO05D007569 2.7e-34 148.7 79 86.1
Mapoly0007s0279 Marchantia polymorpha HOM05D006200 ORTHO05D007569 3.6e-34 148.3 107 65.4
arahy.Tifrunner.gnm1.ann1.HJ95Y2 Arachis hypogaea HOM05D006200 ORTHO05D007569 3.9e-33 144.8 79 82.3
Pp3c6_18880 Physcomitrium patens HOM05D006200 ORTHO05D007569 2.6e-32 142.1 107 62.6
DCAR_021101 Daucus carota HOM05D006200 ORTHO05D007569 7.4e-32 140.6 79 79.7
SMO356G0472 Selaginella moellendorffii HOM05D006200 ORTHO05D007569 9.7e-32 140.2 87 70.1
Pp3c6_18900 Physcomitrium patens HOM05D006200 ORTHO05D007569 1.3e-31 139.8 98 67.3
Zm00001eb402120 Zea mays HOM05D006200 ORTHO05D007569 2.4e-30 135.6 109 62.4
CsaV3_7G002590 Cucumis sativus L. HOM05D006200 ORTHO05D007569 1.7e-28 129.4 75 82.7
MSTRG.6639 Avicennia marina HOM05D006200 ORTHO05D007569 3.6e-26 121.7 75 77.3
Cre12.g543050 Chlamydomonas reinhardtii HOM05D006200 ORTHO05D007569 4.7e-26 121.3 107 51.4
AUR62015021 Chenopodium quinoa HOM05D006200 ORTHO05D007569 1.0e-25 120.2 64 81.2
AagrBONN_evm.TU.Sc2ySwM_368.977 Anthoceros agrestis HOM05D006200 ORTHO05D007569 5.2e-25 117.9 64 78.1
Zm00001eb093000 Zea mays HOM05D006200 ORTHO05D007569 4.4e-24 114.8 109 56.0
Thhalv10009367m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 7.4e-24 114.0 64 76.6
Zm00001eb414470 Zea mays HOM05D006200 ORTHO05D007569 7.4e-24 114.0 69 81.2
Thhalv10016039m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 1.3e-23 113.2 64 75.0
Thhalv10023849m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 2.2e-23 112.5 64 75.0
Ah.01g013830 Amaranthus hybridus HOM05D004982 ORTHO05D007569 1.1e-22 110.2 63 76.2
PGR042G1757 Punica granatum HOM05D006200 ORTHO05D007569 1.1e-22 110.2 64 73.4
Thhalv10027363m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 1.8e-22 109.4 64 73.4
SHI10134 Sapria himalayana HOM05D006200 ORTHO05D007569 1.3e-20 103.2 65 66.2
MD17G1249100 Malus domestica HOM05D006200 ORTHO05D007569 3.6e-18 95.1 50 80.0
Pp3c16_4930 Physcomitrium patens HOM05D006200 ORTHO05D007569 8.8e-17 90.5 105 48.6
Pp3c16_5110 Physcomitrium patens HOM05D006200 ORTHO05D007569 8.8e-17 90.5 105 48.6
Hund21568 Selenicereus undatus HOM05D006200 ORTHO05D007569 9.7e-16 87.0 152 41.4
Zm00001eb125940 Zea mays HOM05D000001 ORTHO05D007569 2.7e-13 79.0 56 73.2
Aqoxy5G00520 Aquilegia oxysepala HOM05D006200 ORTHO05D007569 5.0e-12 74.7 40 80.0
RcHm_v2.0_Chr5g0026981 Rosa chinensis HOM05D006200 ORTHO05D007569 1.8e-09 66.2 37 75.7
C03p34670 Brassica napus HOM05D006200 ORTHO05D007569 1.2e-08 63.5 50 70.0
BolC3t15778H Brassica oleracea HOM05D006200 ORTHO05D007569 1.2e-08 63.5 50 70.0


User provided reference genes

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