Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G4613 Papaver somniferum HOM05D001108 ORTHO05D005418 1.1e-159 566.6 284 100.0
PSO675G3815 Papaver somniferum HOM05D001108 ORTHO05D005418 1.2e-158 563.1 284 98.9
PSO478G1555 Papaver somniferum HOM05D001108 ORTHO05D005418 2.0e-150 535.8 284 94.0
PSO782G4551 Papaver somniferum HOM05D001108 ORTHO05D005418 3.8e-149 531.6 284 94.0
TAR627G0387 Trochodendron aralioides HOM05D001108 ORTHO05D005418 2.7e-102 375.9 272 71.3
Nn1g04079 Nelumbo nucifera HOM05D001108 ORTHO05D005418 5.6e-100 368.2 274 69.3
EL10Ac9g20764 Beta vulgaris HOM05D001108 ORTHO05D005418 8.3e-96 354.4 270 67.4
AUR62019549 Chenopodium quinoa HOM05D001108 ORTHO05D005418 9.2e-95 350.9 277 64.6
CSS0042510 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 2.0e-94 349.7 280 65.7
CSS0002926 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 2.7e-94 349.4 280 65.7
Hund07929 Selenicereus undatus HOM05D001108 ORTHO05D005418 7.8e-94 347.8 280 65.7
Sc21g0002830 Simmondsia chinensis HOM05D001108 ORTHO05D005418 1.7e-93 346.7 266 69.5
vmacro12300 Vaccinium macrocarpon HOM05D001108 ORTHO05D005418 3.9e-93 345.5 280 65.4
AUR62036092 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.1e-92 344.0 276 63.8
CSS0044059 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 3.3e-92 342.4 272 66.2
Ah.01g015170 Amaranthus hybridus HOM05D001108 ORTHO05D005418 7.3e-92 341.3 272 67.3
CSS0039738 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 9.5e-92 340.9 289 63.7
HanXRQChr06g0171321 Helianthus annuus HOM05D001108 ORTHO05D005418 4.7e-91 338.6 296 63.2
MD09G1247800 Malus domestica HOM05D001108 ORTHO05D005418 2.3e-90 336.3 251 70.1
CiPaw.04G125800 Carya illinoinensis HOM05D001108 ORTHO05D005418 4.0e-90 335.5 280 63.6
Prupe.3G137500 Prunus persica HOM05D001108 ORTHO05D005418 6.8e-90 334.7 281 63.7
HanXRQChr06g0171311 Helianthus annuus HOM05D001108 ORTHO05D005418 8.9e-90 334.3 288 63.2
MD17G1240700 Malus domestica HOM05D001108 ORTHO05D005418 8.9e-90 334.3 261 67.4
EL10Ac4g08320 Beta vulgaris HOM05D001108 ORTHO05D005418 1.5e-89 333.6 254 66.1
Aqoxy1G02436 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 2.0e-89 333.2 184 90.2
QL08p038694 Quercus lobata HOM05D001108 ORTHO05D005418 2.6e-89 332.8 280 64.3
Thecc.05G172000 Theobroma cacao HOM05D001108 ORTHO05D005418 3.4e-89 332.4 281 63.3
Haze_21052 Corylus avellana HOM05D001108 ORTHO05D001619 5.8e-89 331.6 280 62.9
Ciclev10013903m.g Citrus clementina HOM05D001108 ORTHO05D005418 7.5e-89 331.3 280 63.6
Rhsim06G0142500 Rhododendron simsii HOM05D001108 ORTHO05D005418 7.5e-89 331.3 281 63.0
Lsat_1_v5_gn_4_70021 Lactuca sativa HOM05D001108 ORTHO05D005418 9.8e-89 330.9 247 68.4
RcHm_v2.0_Chr7g0232111 Rosa chinensis HOM05D001108 ORTHO05D005418 1.3e-88 330.5 282 63.1
FAN04G2154 Fragaria x ananassa HOM05D001108 ORTHO05D005418 2.2e-88 329.7 289 61.9
Sopen07g028120 Solanum pennellii HOM05D001108 ORTHO05D005418 3.7e-88 328.9 264 66.3
Solyc07g054190.4 Solanum lycopersicum HOM05D001108 ORTHO05D005418 1.1e-87 327.4 264 65.9
CAN.G248.33 Capsicum annuum HOM05D001108 ORTHO05D005418 1.4e-87 327.0 210 77.1
Lsat_1_v5_gn_3_37280 Lactuca sativa HOM05D001108 ORTHO05D005418 1.4e-87 327.0 264 65.5
Nitab4.5_0004071g0020 Nicotiana tabacum HOM05D001108 ORTHO05D005418 1.4e-87 327.0 225 72.9
CANSAT80G2367 Cannabis sativa HOM05D001108 ORTHO05D005418 2.4e-87 326.2 264 63.3
TWI75G0959 Tripterygium wilfordii HOM05D001108 ORTHO05D005418 4.1e-87 325.5 266 65.0
Nitab4.5_0000512g0050 Nicotiana tabacum HOM05D001108 ORTHO05D005418 5.4e-87 325.1 225 72.9
Lalb_Chr03g0029441 Lupinus albus HOM05D001108 ORTHO05D005418 9.2e-87 324.3 273 63.7
Nn1g06569 Nelumbo nucifera HOM05D001108 ORTHO05D005418 9.2e-87 324.3 241 68.9
Ca_20056_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 1.2e-86 323.9 250 65.6
AUR62002952 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.6e-86 323.6 229 72.5
Atru.chr6.2997 Acer truncatum HOM05D001108 ORTHO05D005418 3.5e-86 322.4 283 63.3
Lj3g0011439 Lotus japonicus HOM05D001108 ORTHO05D005418 4.6e-86 322.0 242 68.6
COL.COLO4_33977 Corchorus olitorius HOM05D001108 ORTHO05D005418 7.8e-86 321.2 280 61.4
FvH4_5g33380 Fragaria vesca HOM05D001108 ORTHO05D005418 1.0e-85 320.9 294 60.2
FAN18G0425 Fragaria x ananassa HOM05D001108 ORTHO05D005418 1.0e-85 320.9 294 60.2
Gohir.A09G128300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 1.0e-85 320.9 281 60.5
DCAR_013007 Daucus carota HOM05D001108 ORTHO05D005418 1.3e-85 320.5 195 81.0
VMungo1127G1775 Vigna mungo HOM05D001108 ORTHO05D005418 1.7e-85 320.1 261 65.5
Cpa.g.sc34.160 Carica papaya HOM05D001108 ORTHO05D005418 3.0e-85 319.3 263 64.3
Migut.C01348 Erythranthe guttata HOM05D001108 ORTHO05D005418 1.5e-84 317.0 267 64.4
MSTRG.5628 Avicennia marina HOM05D001108 ORTHO05D005418 1.9e-84 316.6 225 72.0
Phvul.011G114100 Phaseolus vulgaris HOM05D001108 ORTHO05D005418 1.9e-84 316.6 207 75.4
Medtr1g066930 Medicago truncatula HOM05D001108 ORTHO05D005418 2.5e-84 316.2 229 68.1
Aqoxy1G02437 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 3.3e-84 315.8 257 63.0
Manes.13G146800 Manihot esculenta HOM05D001108 ORTHO05D005418 3.3e-84 315.8 273 64.8
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 4.3e-84 315.5 214 75.2
CAN.G248.11 Capsicum annuum HOM05D001108 ORTHO05D005418 9.5e-84 314.3 206 75.2
ClCG02G017630 Citrullus lanatus HOM05D001108 ORTHO05D005418 9.5e-84 314.3 265 61.9
Glyma.12G112900 Glycine max HOM05D001108 ORTHO05D005418 9.5e-84 314.3 210 74.8
Duzib093G1006 Durio zibethinus HOM05D001108 ORTHO05D005418 1.2e-83 313.9 282 60.6
Gohir.D09G124300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 1.6e-83 313.5 267 62.2
Medtr0004s0220 Medicago truncatula HOM05D001108 ORTHO05D005418 1.6e-83 313.5 220 70.9
Sed0006413 Sechium edule HOM05D001108 ORTHO05D005418 2.1e-83 313.2 270 61.5
Gorai.006G143100 Gossypium raimondii HOM05D001108 ORTHO05D005418 4.7e-83 312.0 267 62.2
Cpa.g.sc34.159 Carica papaya HOM05D001108 ORTHO05D005418 6.2e-83 311.6 278 57.6
AT2G20690 Arabidopsis thaliana HOM05D001108 ORTHO05D005418 1.8e-82 310.1 204 74.5
ECA246G0340 Erigeron canadensis HOM05D001108 ORTHO05D005418 1.8e-82 310.1 203 76.8
HPP92_003131 Vanilla planifolia HOM05D001108 ORTHO05D005418 1.8e-82 310.1 204 73.5
CARHR111330 Cardamine hirsuta HOM05D001108 ORTHO05D005418 2.3e-82 309.7 204 74.5
THA.LOC104824701 Tarenaya hassleriana HOM05D001108 ORTHO05D005418 2.3e-82 309.7 204 75.5
CDE02G0464 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 3.1e-82 309.3 197 76.6
Carub.0003s3520 Capsella rubella HOM05D001108 ORTHO05D005418 4.0e-82 308.9 204 75.5
CsaV3_6G013000 Cucumis sativus L. HOM05D001108 ORTHO05D005418 4.0e-82 308.9 238 65.5
CsaV3_6G012940 Cucumis sativus L. HOM05D001108 ORTHO05D005418 5.2e-82 308.5 239 65.7
SalBow1G0161 Salvia bowleyana HOM05D001108 ORTHO05D005418 5.2e-82 308.5 249 66.7
Haze_13157 Corylus avellana HOM05D001108 ORTHO05D005418 6.8e-82 308.1 198 77.3
Thhalv10002078m.g Eutrema salsugineum HOM05D001108 ORTHO05D005418 1.2e-81 307.4 204 74.5
AL3G53780 Arabidopsis lyrata HOM05D001108 ORTHO05D005418 1.5e-81 307.0 204 74.0
PGSC0003DMG400018350 Solanum tuberosum HOM05D001108 ORTHO05D005418 2.0e-81 306.6 198 77.3
AUR62007757 Chenopodium quinoa HOM05D001108 ORTHO05D005418 3.4e-81 305.8 221 70.6
BcaB03g16863 Brassica carinata HOM05D001108 ORTHO05D005418 4.4e-81 305.4 213 72.8
unitig_60.g25406 Utricularia gibba HOM05D001108 ORTHO05D005418 5.8e-81 305.1 225 69.3
Sabra19G0110800 Salix brachista HOM05D001108 ORTHO05D005418 7.5e-81 304.7 272 61.8
Sabra19G0112200 Salix brachista HOM05D001108 ORTHO05D005418 7.5e-81 304.7 272 61.8
Potri.013G131800 Populus trichocarpa HOM05D001108 ORTHO05D005418 9.8e-81 304.3 273 60.1
Cc05_g07130 Coffea canephora HOM05D001108 ORTHO05D005418 1.7e-80 303.5 198 76.8
Eucgr.K01017 Eucalyptus grandis HOM05D001108 ORTHO05D005418 2.2e-80 303.1 216 70.4
Potri.019G100500 Populus trichocarpa HOM05D001108 ORTHO05D005418 2.2e-80 303.1 266 62.0
Cfa017142 Carpinus fangiana HOM05D001108 ORTHO05D005418 3.7e-80 302.4 198 75.8
PGR142G4253 Punica granatum HOM05D001108 ORTHO05D005418 2.4e-79 299.7 205 73.7
C07p00210 Brassica napus HOM05D001108 ORTHO05D005418 5.4e-79 298.5 201 74.6
BcaC06g36761 Brassica carinata HOM05D001108 ORTHO05D005418 2.7e-78 296.2 201 74.1
BolC7t40471H Brassica oleracea HOM05D001108 ORTHO05D005418 2.7e-78 296.2 201 74.1
Sabra13G0111300 Salix brachista HOM05D001108 ORTHO05D005418 2.7e-78 296.2 263 61.2
Sp3g33940 Schrenkiella parvula HOM05D001108 ORTHO05D005418 3.5e-78 295.8 193 76.2
SEGI_26411 Sequoiadendron giganteum HOM05D001108 ORTHO05D005418 6.0e-78 295.0 210 71.4
A07p00070 Brassica napus HOM05D001108 ORTHO05D005418 1.3e-77 293.9 214 71.0
SGA_v2.0_scaffold92G28314 Striga asiatica HOM05D001108 ORTHO05D005418 5.1e-77 292.0 250 61.6
BraA07t27798Z Brassica rapa HOM05D001108 ORTHO05D005418 8.6e-77 291.2 214 70.6
Dinv26419 Davidia involucrata HOM05D001108 ORTHO05D005418 1.5e-76 290.4 177 79.7
Pp3c2_19260 Physcomitrium patens HOM05D001108 ORTHO05D005418 1.9e-76 290.0 201 72.1
Dinv23643 Davidia involucrata HOM05D001108 ORTHO05D005418 7.3e-76 288.1 177 79.7
Lj1P722T15 Lonicera japonica HOM05D001108 ORTHO05D005418 9.5e-76 287.7 178 80.3
MELO3C000760.2 Cucumis melo HOM05D001108 ORTHO05D005418 1.2e-75 287.3 224 65.6
AagrBONN_evm.TU.Sc2ySwM_228.5414 Anthoceros agrestis HOM05D001108 ORTHO05D005418 2.3e-74 283.1 205 68.8
Mapoly0026s0114 Marchantia polymorpha HOM05D001108 ORTHO05D005418 3.4e-73 279.3 200 70.0
CDE09G0563 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 4.4e-73 278.9 179 76.5
arahy.Tifrunner.gnm1.ann1.85LIYI Arachis hypogaea HOM05D001108 ORTHO05D005418 1.7e-72 276.9 204 71.1
arahy.Tifrunner.gnm1.ann1.SGC5R3 Arachis hypogaea HOM05D001108 ORTHO05D005418 2.2e-72 276.6 202 71.8
arahy.Tifrunner.gnm1.ann1.PPEG78 Arachis hypogaea HOM05D001108 ORTHO05D005418 4.9e-72 275.4 212 68.9
SMO137G0361 Selaginella moellendorffii HOM05D001108 ORTHO05D005418 6.4e-72 275.0 199 67.8
arahy.Tifrunner.gnm1.ann1.S0UG05 Arachis hypogaea HOM05D001108 ORTHO05D005418 4.1e-71 272.3 204 70.6
CBR_g36747 Chara braunii HOM05D001108 ORTHO05D005418 1.7e-69 266.9 220 62.3
Ah.04g164360 Amaranthus hybridus HOM05D001108 ORTHO05D005418 3.0e-69 266.2 237 59.1
ATR1096G056 Amborella trichopoda HOM05D001108 ORTHO05D005418 5.1e-69 265.4 217 61.3
Duzib128G0360 Durio zibethinus HOM05D001108 ORTHO05D005418 1.6e-67 260.4 255 55.7
Actinidia11036 Actinidia chinensis HOM05D001108 ORTHO05D005418 3.6e-67 259.2 184 71.2
Zm00001eb410410 Zea mays HOM05D001108 ORTHO05D005418 3.8e-64 249.2 223 57.0
Zm00001eb410210 Zea mays HOM05D001108 ORTHO05D005418 4.9e-64 248.8 224 55.8
Os12g0541000 Oryza sativa ssp. japonica HOM05D001108 ORTHO05D005418 7.8e-62 241.5 242 50.8
BcaC04g22783 Brassica carinata HOM05D001108 ORTHO05D005418 3.3e-60 236.1 234 58.1
CAN.G248.16 Capsicum annuum HOM05D001108 ORTHO05D005418 1.6e-59 233.8 165 70.3
CAN.G851.1 Capsicum annuum HOM05D001108 ORTHO05D005418 1.6e-59 233.8 165 70.3
HanXRQChr06g0169711 Helianthus annuus HOM05D001108 ORTHO05D005418 7.6e-57 224.9 276 50.7
Sabra19G0110900 Salix brachista HOM05D001108 ORTHO05D005418 2.2e-56 223.4 264 51.5
MD09G1265300 Malus domestica HOM05D001108 ORTHO05D005418 4.3e-52 209.1 181 61.9
Psat4g001880 Pisum sativum HOM05D001108 ORTHO05D005418 3.6e-51 206.1 271 45.8
C09p15330 Brassica napus HOM05D001108 ORTHO05D005418 1.8e-50 203.8 198 57.6
CANSAT80G2295 Cannabis sativa HOM05D001108 ORTHO05D005418 7.1e-47 191.8 135 68.9
Lsat_1_v5_gn_4_42240 Lactuca sativa HOM05D001108 ORTHO05D005418 1.3e-43 181.0 115 76.5
Cfa026241 Carpinus fangiana HOM05D001108 ORTHO05D005418 1.4e-42 177.6 229 44.5
unitig_88.g27586 Utricularia gibba HOM05D001108 ORTHO05D005418 6.9e-42 175.3 111 76.6
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 1.3e-40 171.0 199 46.2
HanXRQChr06g0169731 Helianthus annuus HOM05D001108 ORTHO05D005418 5.5e-39 165.6 97 82.5
CAN.G362.18 Capsicum annuum HOM05D001108 ORTHO05D005418 3.1e-34 149.8 216 43.1
FAN08G2132 Fragaria x ananassa HOM05D001108 ORTHO05D005418 1.1e-31 141.4 88 76.1
Cfa014613 Carpinus fangiana HOM05D001108 ORTHO05D005418 6.1e-30 135.6 195 44.6
PRCOL_00001102 Prasinoderma coloniale HOM05D001108 ORTHO05D005418 1.3e-24 117.9 156 41.0
unitig_88.g27587 Utricularia gibba HOM05D001108 ORTHO05D005418 6.5e-24 115.5 94 61.7
MCO11G757 Micromonas commoda HOM05D001108 ORTHO05D005418 8.5e-24 115.2 226 37.6
Cre06.g296600 Chlamydomonas reinhardtii HOM05D001108 ORTHO05D005418 1.9e-23 114.0 211 36.5
Psat5g098840 Pisum sativum HOM05D001108 ORTHO05D005418 3.0e-21 106.7 134 45.5
CAN.G248.14 Capsicum annuum HOM05D001108 ORTHO05D005418 3.9e-21 106.3 70 71.4
Ca_28725_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 3.3e-20 103.2 205 35.6
AagrBONN_evm.TU.Sc2ySwM_228.459 Anthoceros agrestis HOM05D001108 ORTHO05D005418 3.1e-18 96.7 205 32.2
Psat5g097760 Pisum sativum HOM05D002292 ORTHO05D005418 2.2e-16 90.5 186 34.9
Medtr4g063470 Medicago truncatula HOM05D001108 ORTHO05D005418 6.5e-16 89.0 66 62.1
Lsat_1_v5_gn_8_150060 Lactuca sativa HOM05D001108 ORTHO05D005418 7.4e-12 75.5 65 55.4
RcHm_v2.0_Chr2g0153941 Rosa chinensis HOM05D001108 ORTHO05D005418 2.8e-11 73.6 113 42.5
Psat0s773g0040 Pisum sativum HOM05D001108 ORTHO05D005418 1.0e-08 65.1 155 34.2
BolC9t54441H Brassica oleracea HOM05D001108 ORTHO05D005418 1.7e-08 64.3 47 68.1
MBI06_g06479_MAGBIO Magnolia biondii HOM05D001108 ORTHO05D005418 2.2e-08 63.9 67 56.7
C09p34920 Brassica napus HOM05D001108 ORTHO05D005418 3.6e-06 56.6 55 52.7
BolC9t56339H Brassica oleracea HOM05D001108 ORTHO05D005418 3.6e-06 56.6 55 52.7


User provided reference genes

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