Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G4510 Papaver somniferum HOM05D002173 ORTHO05D002189 3.8e-108 394.8 195 100.0
PSO675G6517 Papaver somniferum HOM05D002173 ORTHO05D002189 3.2e-62 242.3 184 66.3
PSO541G0163 Papaver somniferum HOM05D002173 ORTHO05D002189 1.4e-46 190.3 160 58.8
MBI13_g41462_MAGBIO Magnolia biondii HOM05D002173 ORTHO05D002189 1.1e-14 84.3 158 31.6
MBI13_g45471_MAGBIO Magnolia biondii HOM05D002173 ORTHO05D002189 1.1e-14 84.3 158 31.6
EL10Ac2g02882 Beta vulgaris HOM05D002173 ORTHO05D002189 9.3e-14 81.3 130 35.4
VMungo1383G2459 Vigna mungo HOM05D002173 ORTHO05D002189 1.2e-13 80.9 142 33.8
Thecc.03G248700 Theobroma cacao HOM05D002173 ORTHO05D002189 7.9e-13 78.2 128 32.8
Ah.10g030890 Amaranthus hybridus HOM05D002173 ORTHO05D002189 1.0e-12 77.8 130 35.4
Phvul.001G128400 Phaseolus vulgaris HOM05D002173 ORTHO05D002189 1.0e-12 77.8 142 34.5
Haze_03105 Corylus avellana HOM05D002173 ORTHO05D002189 1.3e-12 77.4 129 34.9
Nn7g36438 Nelumbo nucifera HOM05D002173 ORTHO05D002189 2.3e-12 76.6 117 34.2
QL04p013027 Quercus lobata HOM05D002173 ORTHO05D002189 2.3e-12 76.6 128 34.4
RcHm_v2.0_Chr3g0484321 Rosa chinensis HOM05D002173 ORTHO05D002189 2.3e-12 76.6 131 34.4
QL04p012417 Quercus lobata HOM05D002173 ORTHO05D002189 3.9e-12 75.9 110 37.3
Lj1g0005167 Lotus japonicus HOM05D002173 ORTHO05D002189 5.1e-12 75.5 182 29.7
CSS0036465 Camellia sinensis var. sinensis HOM05D002173 ORTHO05D002189 6.7e-12 75.1 121 36.4
Cfa010839 Carpinus fangiana HOM05D002173 ORTHO05D002189 6.7e-12 75.1 129 33.3
Potri.006G045900 Populus trichocarpa HOM05D002173 ORTHO05D002189 6.7e-12 75.1 150 30.7
Sp6g38770 Schrenkiella parvula HOM05D002173 ORTHO05D002189 6.7e-12 75.1 132 31.8
Dinv30304 Davidia involucrata HOM05D002173 ORTHO05D002189 1.1e-11 74.3 146 32.2
Dinv39677 Davidia involucrata HOM05D002173 ORTHO05D002189 1.1e-11 74.3 146 32.2
AUR62026806 Chenopodium quinoa HOM05D002173 ORTHO05D002189 1.5e-11 73.9 130 33.8
AUR62037246 Chenopodium quinoa HOM05D002173 ORTHO05D002189 1.5e-11 73.9 101 37.6
unitig_26.g8824 Utricularia gibba HOM05D002173 ORTHO05D002189 1.5e-11 73.9 111 38.7
CSS0001503 Camellia sinensis var. sinensis HOM05D002173 ORTHO05D002189 1.9e-11 73.6 137 34.3
CSS0041155 Camellia sinensis var. sinensis HOM05D002173 ORTHO05D002189 1.9e-11 73.6 137 34.3
Migut.B01196 Erythranthe guttata HOM05D002173 ORTHO05D002189 1.9e-11 73.6 97 38.1
Gohir.A13G011000 Gossypium hirsutum HOM05D002173 ORTHO05D002189 1.9e-11 73.6 164 31.7
Nitab4.5_0000316g0280 Nicotiana tabacum HOM05D002173 ORTHO05D002189 1.9e-11 73.6 107 38.3
PSO384G0372 Papaver somniferum HOM05D002173 ORTHO05D002189 1.9e-11 73.6 151 30.5
Sabra06G0031300 Salix brachista HOM05D003639 ORTHO05D004246 1.9e-11 73.6 128 32.8
CANSAT80G2767 Cannabis sativa HOM05D002173 ORTHO05D002189 2.5e-11 73.2 108 34.3
Haze_19746 Corylus avellana HOM05D002173 ORTHO05D002189 2.5e-11 73.2 127 33.9
PSO339G1669 Papaver somniferum HOM05D002173 ORTHO05D002189 2.5e-11 73.2 151 30.5
SalBow5G2690 Salvia bowleyana HOM05D002173 ORTHO05D002189 2.5e-11 73.2 165 31.5
SGA_v2.0_scaffold119G32788 Striga asiatica HOM05D002173 ORTHO05D002189 2.5e-11 73.2 100 40.0
Cpa.g.sc120.5 Carica papaya HOM05D002173 ORTHO05D002189 4.3e-11 72.4 151 29.1
Cfa016755 Carpinus fangiana HOM05D000751 ORTHO05D005618 4.3e-11 72.4 130 30.8
Hma1.2p1_0579F.1_g182700 Hydrangea macrophylla HOM05D002173 ORTHO05D002189 4.3e-11 72.4 113 36.3
QL04p012430 Quercus lobata HOM05D002173 ORTHO05D002189 4.3e-11 72.4 110 37.3
Sabra16G0047900 Salix brachista HOM05D002173 ORTHO05D002189 4.3e-11 72.4 117 32.5
Solyc01g068170.3 Solanum lycopersicum HOM05D002173 ORTHO05D002189 4.3e-11 72.4 101 38.6
Sopen01g030110 Solanum pennellii HOM05D002173 ORTHO05D002189 4.3e-11 72.4 101 38.6
TAR623G0334 Trochodendron aralioides HOM05D002173 ORTHO05D002189 4.3e-11 72.4 162 30.2
Lsat_1_v5_gn_4_30361 Lactuca sativa HOM05D002173 ORTHO05D002189 5.6e-11 72.0 101 36.6
Ca_22953_v3 Cicer arietinum L. HOM05D002173 ORTHO05D002189 7.4e-11 71.6 108 36.1
Gorai.003G173500 Gossypium raimondii HOM05D002173 ORTHO05D002189 7.4e-11 71.6 97 36.1
Potri.016G042400 Populus trichocarpa HOM05D002173 ORTHO05D002189 7.4e-11 71.6 117 33.3
Hund13320 Selenicereus undatus HOM05D002173 ORTHO05D002189 7.4e-11 71.6 101 36.6
Duzib093G0515 Durio zibethinus HOM05D002173 ORTHO05D002189 9.6e-11 71.2 117 35.0
Thhalv10014260m.g Eutrema salsugineum HOM05D002173 ORTHO05D002189 9.6e-11 71.2 99 35.4
FvH4_6g24740 Fragaria vesca HOM05D002173 ORTHO05D002189 9.6e-11 71.2 98 36.7
FAN14G1603 Fragaria x ananassa HOM05D002173 ORTHO05D002189 9.6e-11 71.2 98 36.7
Gohir.D03G164600 Gossypium hirsutum HOM05D002173 ORTHO05D002189 9.6e-11 71.2 97 36.1
Gorai.003G174300 Gossypium raimondii HOM05D002173 ORTHO05D002189 9.6e-11 71.2 97 36.1
Oeu027350.1 Olea europaea HOM05D002173 ORTHO05D002189 9.6e-11 71.2 108 37.0
Gohir.D13G011700 Gossypium hirsutum HOM05D002173 ORTHO05D002189 1.3e-10 70.9 171 29.8
Gorai.013G012800 Gossypium raimondii HOM05D002173 ORTHO05D002189 1.3e-10 70.9 171 29.8
Nitab4.5_0001775g0100 Nicotiana tabacum HOM05D002173 ORTHO05D002189 1.3e-10 70.9 107 37.4
FAN10G4218 Fragaria x ananassa HOM05D002173 ORTHO05D002189 1.6e-10 70.5 151 31.1
Glyma.04G142100 Glycine max HOM05D002173 ORTHO05D002189 1.6e-10 70.5 99 35.4
Manes.04G163500 Manihot esculenta HOM05D002173 ORTHO05D002189 1.6e-10 70.5 134 35.1
Manes.08G054000 Manihot esculenta HOM05D002173 ORTHO05D002189 1.6e-10 70.5 117 34.2
Atru.chr11.2562 Acer truncatum HOM05D002173 ORTHO05D002189 2.1e-10 70.1 99 36.4
BraA10t45256Z Brassica rapa HOM05D002173 ORTHO05D002189 2.1e-10 70.1 112 31.2
Duzib205G1193 Durio zibethinus HOM05D002173 ORTHO05D002189 2.1e-10 70.1 92 35.9
QL04p013053 Quercus lobata HOM05D002173 ORTHO05D002189 2.1e-10 70.1 110 36.4
Thecc.05G145400 Theobroma cacao HOM05D002173 ORTHO05D002189 2.1e-10 70.1 117 34.2
A10p32130 Brassica napus HOM05D002173 ORTHO05D002189 2.8e-10 69.7 99 33.3
C09p72860 Brassica napus HOM05D002173 ORTHO05D002189 2.8e-10 69.7 99 33.3
BolC9t60022H Brassica oleracea HOM05D002173 ORTHO05D002189 2.8e-10 69.7 99 33.3
FAN02G1189 Fragaria x ananassa HOM05D002173 ORTHO05D002189 3.7e-10 69.3 98 36.7
FAN09G4735 Fragaria x ananassa HOM05D002173 ORTHO05D002189 3.7e-10 69.3 97 37.1
Gorai.003G172500 Gossypium raimondii HOM05D002173 ORTHO05D002189 3.7e-10 69.3 97 35.1
PGR142G0080 Punica granatum HOM05D002173 ORTHO05D002189 3.7e-10 69.3 131 31.3
MD10G1269800 Malus domestica HOM05D002173 ORTHO05D002189 4.8e-10 68.9 119 31.9
CANSAT80G2573 Cannabis sativa HOM05D002173 ORTHO05D002189 6.2e-10 68.6 157 28.0
Lsat_1_v5_gn_5_161041 Lactuca sativa HOM05D002173 ORTHO05D002189 6.2e-10 68.6 138 31.2
Medtr1g051750 Medicago truncatula HOM05D002173 ORTHO05D002189 6.2e-10 68.6 96 38.5
RcHm_v2.0_Chr1g0319371 Rosa chinensis HOM05D002173 ORTHO05D002189 6.2e-10 68.6 111 35.1
THA.LOC104816399 Tarenaya hassleriana HOM05D002173 ORTHO05D002189 6.2e-10 68.6 132 30.3
TWI53G2055 Tripterygium wilfordii HOM05D002173 ORTHO05D002189 6.2e-10 68.6 117 34.2
TAR633G0304 Trochodendron aralioides HOM05D002173 ORTHO05D002189 6.2e-10 68.6 117 33.3
BcaC06g32101 Brassica carinata HOM05D002173 ORTHO05D002189 8.2e-10 68.2 112 32.1
Duzib106G0754 Durio zibethinus HOM05D002173 ORTHO05D002189 8.2e-10 68.2 117 33.3
Duzib128G1350 Durio zibethinus HOM05D002173 ORTHO05D002189 8.2e-10 68.2 117 34.2
FvH4_7g02130 Fragaria vesca HOM05D002173 ORTHO05D002189 8.2e-10 68.2 140 32.1
FAN03G0241 Fragaria x ananassa HOM05D002173 ORTHO05D002189 8.2e-10 68.2 115 34.8
FAN06G0642 Fragaria x ananassa HOM05D002173 ORTHO05D002189 8.2e-10 68.2 140 32.1
BcaC01g02591 Brassica carinata HOM05D002173 ORTHO05D002189 1.1e-09 67.8 99 33.3
CANSAT80G0152 Cannabis sativa HOM05D002173 ORTHO05D002189 1.1e-09 67.8 118 30.5
Prupe.7G050400 Prunus persica HOM05D002173 ORTHO05D002189 1.1e-09 67.8 97 37.1
Actinidia39195 Actinidia chinensis HOM05D002173 ORTHO05D002189 1.4e-09 67.4 119 30.3
MD02G1297200 Malus domestica HOM05D002173 ORTHO05D002189 1.4e-09 67.4 101 36.6
MSTRG.20544 Avicennia marina HOM05D002173 ORTHO05D002189 1.8e-09 67.0 154 30.5
Cpa.g.c35010 Carica papaya HOM05D002173 ORTHO05D002189 1.8e-09 67.0 132 33.3
Eucgr.G03269 Eucalyptus grandis HOM05D002173 ORTHO05D002189 1.8e-09 67.0 109 30.3
MD10G1269900 Malus domestica HOM05D002173 ORTHO05D002189 1.8e-09 67.0 100 35.0
PGSC0003DMG400006821 Solanum tuberosum HOM05D002173 ORTHO05D002189 1.8e-09 67.0 101 35.6
Gohir.D03G164233 Gossypium hirsutum HOM05D002173 ORTHO05D002189 2.4e-09 66.6 97 34.0
Gohir.D10G254000 Gossypium hirsutum HOM05D002173 ORTHO05D002189 2.4e-09 66.6 99 33.3
Gorai.011G295000 Gossypium raimondii HOM05D002173 ORTHO05D002189 2.4e-09 66.6 99 33.3
Atru.chr1.1190 Acer truncatum HOM05D002173 ORTHO05D002189 3.1e-09 66.2 98 35.7
FAN05G4205 Fragaria x ananassa HOM05D002173 ORTHO05D002189 3.1e-09 66.2 98 35.7
Gohir.A10G242000 Gossypium hirsutum HOM05D002173 ORTHO05D002189 3.1e-09 66.2 99 34.3
Lj3g0016127 Lotus japonicus HOM05D002173 ORTHO05D002189 3.1e-09 66.2 100 36.0
Peaxi162Scf00087g00125 Petunia axillaris HOM05D002173 ORTHO05D002189 4.0e-09 65.9 102 39.2
Sc11g0006790 Simmondsia chinensis HOM05D002173 ORTHO05D002189 4.0e-09 65.9 167 31.1
GSVIVG01033550001 Vitis vinifera HOM05D002173 ORTHO05D002189 4.0e-09 65.9 117 32.5
CANSAT80G0648 Cannabis sativa HOM05D002173 ORTHO05D002189 5.3e-09 65.5 136 30.9
CANSAT80G1665 Cannabis sativa HOM05D002173 ORTHO05D002189 5.3e-09 65.5 136 30.9
Medtr7g090775 Medicago truncatula HOM05D002173 ORTHO05D002189 5.3e-09 65.5 111 31.5
Phvul.005G033600 Phaseolus vulgaris HOM05D002173 ORTHO05D002189 5.3e-09 65.5 96 35.4
AT5G03990 Arabidopsis thaliana HOM05D002173 ORTHO05D002189 6.9e-09 65.1 99 32.3
Manes.09G015800 Manihot esculenta HOM05D002173 ORTHO05D002189 6.9e-09 65.1 117 33.3
TAR369G1091 Trochodendron aralioides HOM05D002173 ORTHO05D002189 6.9e-09 65.1 117 31.6
CiPaw.14G005100 Carya illinoinensis HOM05D002173 ORTHO05D002189 1.2e-08 64.3 97 37.1
Ca_03389_v3 Cicer arietinum L. HOM05D002173 ORTHO05D002189 1.2e-08 64.3 99 33.3
Ca_29548_v3 Cicer arietinum L. HOM05D002173 ORTHO05D002189 1.2e-08 64.3 99 33.3
TPR.G2760 Trifolium pratense HOM05D002173 ORTHO05D002189 1.2e-08 64.3 99 34.3
Actinidia21530 Actinidia chinensis HOM05D002173 ORTHO05D002189 1.5e-08 63.9 106 34.0
AL6G13580 Arabidopsis lyrata HOM05D002173 ORTHO05D002189 1.5e-08 63.9 99 32.3
Lj9P645T33 Lonicera japonica HOM05D002173 ORTHO05D002189 1.5e-08 63.9 101 36.6
Ca_14295_v3 Cicer arietinum L. HOM05D002173 ORTHO05D002189 2.6e-08 63.2 93 34.4
Lj2A389T87 Lonicera japonica HOM05D002173 ORTHO05D002189 2.6e-08 63.2 117 34.2
CARHR209290 Cardamine hirsuta HOM05D002173 ORTHO05D002189 3.4e-08 62.8 99 31.3
Lj2A389G85 Lonicera japonica HOM05D002173 ORTHO05D002189 3.4e-08 62.8 99 38.4
ECA248G3224 Erigeron canadensis HOM05D002173 ORTHO05D002189 4.5e-08 62.4 132 28.8
Lj2g0006533 Lotus japonicus HOM05D002173 ORTHO05D002189 4.5e-08 62.4 152 27.6
Oeu023135.1 Olea europaea HOM05D002173 ORTHO05D002189 7.6e-08 61.6 139 30.2
CDE08G0338 Ceratophyllum demersum HOM05D002173 ORTHO05D002189 1.0e-07 61.2 140 30.0
Eucgr.K01576 Eucalyptus grandis HOM05D002173 ORTHO05D002189 1.7e-07 60.5 118 28.8
Medtr3g023510 Medicago truncatula HOM05D002173 ORTHO05D002189 1.7e-07 60.5 99 32.3
Medtr7g090830 Medicago truncatula HOM05D002173 ORTHO05D002189 1.7e-07 60.5 111 31.5
HPP92_015232 Vanilla planifolia HOM05D002173 ORTHO05D002189 1.7e-07 60.5 98 34.7
CDE09G0032 Ceratophyllum demersum HOM05D002411 ORTHO05D002564 2.2e-07 60.1 117 31.6
MD12G1086400 Malus domestica HOM05D002173 ORTHO05D002189 2.2e-07 60.1 110 33.6
MD14G1080400 Malus domestica HOM05D002173 ORTHO05D002189 2.2e-07 60.1 97 33.0
QL05p068290 Quercus lobata HOM05D002173 ORTHO05D002189 2.2e-07 60.1 101 34.7
Prupe.2G026900 Prunus persica HOM05D002173 ORTHO05D002189 2.9e-07 59.7 115 35.7
Lalb_Chr01g0013831 Lupinus albus HOM05D002173 ORTHO05D002189 3.8e-07 59.3 99 32.3
PGR031G2870 Punica granatum HOM05D002173 ORTHO05D002189 6.5e-07 58.5 109 29.4
QL05p068784 Quercus lobata HOM05D002173 ORTHO05D002189 6.5e-07 58.5 101 33.7
HanXRQChr17g0564991 Helianthus annuus HOM05D002173 ORTHO05D002189 8.4e-07 58.2 101 33.7
Ah.06g193820 Amaranthus hybridus HOM05D002173 ORTHO05D002189 1.9e-06 57.0 109 30.3
Glyma.11G149400 Glycine max HOM05D002173 ORTHO05D002189 3.2e-06 56.2 99 30.3
DCAR_001917 Daucus carota HOM05D002173 ORTHO05D002189 4.2e-06 55.8 112 34.8
Gorai.003G172800 Gossypium raimondii HOM05D002173 ORTHO05D002189 5.5e-06 55.5 86 33.7
Medtr7g090860 Medicago truncatula HOM05D002173 ORTHO05D002189 9.3e-06 54.7 92 32.6


User provided reference genes

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