Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G4466 Papaver somniferum HOM05D004306 ORTHO05D005055 9.9e-277 956.1 453 100.0
Dinv26913 Davidia involucrata HOM05D004306 ORTHO05D005055 1.2e-242 842.8 444 87.8
Gohir.D11G207000 Gossypium hirsutum HOM05D004306 ORTHO05D005055 6.1e-242 840.5 447 87.2
Aqoxy6G02701 Aquilegia oxysepala HOM05D004306 ORTHO05D005055 7.9e-242 840.1 453 85.4
Gohir.A11G216400 Gossypium hirsutum HOM05D004306 ORTHO05D005055 3.9e-241 837.8 445 87.4
Thecc.01G070200 Theobroma cacao HOM05D004306 ORTHO05D005055 5.2e-241 837.4 448 85.7
Actinidia11991 Actinidia chinensis HOM05D004306 ORTHO05D005055 2.0e-240 835.5 444 86.0
Duzib264G0002 Durio zibethinus HOM05D004306 ORTHO05D005055 8.2e-239 830.1 448 85.5
Phvul.003G236000 Phaseolus vulgaris HOM05D004306 ORTHO05D005055 8.2e-239 830.1 444 85.4
VMungo0251G0785 Vigna mungo HOM05D004306 ORTHO05D005055 8.2e-239 830.1 453 83.9
MD15G1294800 Malus domestica HOM05D004306 ORTHO05D005055 1.4e-238 829.3 449 84.9
CsaV3_6G043980 Cucumis sativus L. HOM05D004306 ORTHO05D005055 4.1e-238 827.8 450 84.0
FvH4_1g17390 Fragaria vesca HOM05D004306 ORTHO05D005055 7.0e-238 827.0 449 84.2
Atru.chr3.158 Acer truncatum HOM05D004306 ORTHO05D005055 2.0e-237 825.5 453 84.8
Atru.chr3.187 Acer truncatum HOM05D004306 ORTHO05D005055 2.0e-237 825.5 453 84.8
Lalb_Chr16g0389191 Lupinus albus HOM05D004306 ORTHO05D005055 2.0e-237 825.5 443 85.6
CSS0001342 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 2.6e-237 825.1 443 85.1
Ca_13922_v3 Cicer arietinum L. HOM05D004306 ORTHO05D005055 3.5e-237 824.7 453 83.2
TPR.G23896 Trifolium pratense HOM05D004306 ORTHO05D005055 3.5e-237 824.7 449 83.7
Gorai.007G222100 Gossypium raimondii HOM05D004306 ORTHO05D005055 4.5e-237 824.3 446 85.7
CiPaw.02G003700 Carya illinoinensis HOM05D004306 ORTHO05D005055 1.0e-236 823.2 449 84.9
Cpa.g.sc6.39 Carica papaya HOM05D004306 ORTHO05D005055 1.3e-236 822.8 449 84.0
GSVIVG01000140001 Vitis vinifera HOM05D004306 ORTHO05D005055 2.9e-236 821.6 443 86.0
ECA238G2426 Erigeron canadensis HOM05D004306 ORTHO05D005055 3.8e-236 821.2 445 84.7
Manes.12G110500 Manihot esculenta HOM05D004306 ORTHO05D005055 5.0e-236 820.8 448 84.6
PGR102G2907 Punica granatum HOM05D004306 ORTHO05D005055 1.1e-235 819.7 446 84.1
AUR62040257 Chenopodium quinoa HOM05D004306 ORTHO05D005055 1.9e-235 818.9 449 84.0
Medtr4g095660 Medicago truncatula HOM05D004306 ORTHO05D005055 1.9e-235 818.9 443 84.0
Duzib187G0102 Durio zibethinus HOM05D004306 ORTHO05D005055 2.5e-235 818.5 444 84.5
TAR628G0028 Trochodendron aralioides HOM05D004306 ORTHO05D005055 2.5e-235 818.5 448 84.4
Glyma.17G161900 Glycine max HOM05D004306 ORTHO05D005055 3.2e-235 818.1 448 83.9
TWI09G0703 Tripterygium wilfordii HOM05D004306 ORTHO05D005055 3.2e-235 818.1 449 84.0
Lsat_1_v5_gn_2_82860 Lactuca sativa HOM05D004306 ORTHO05D005055 5.5e-235 817.4 444 84.9
Rhsim10G0101200 Rhododendron simsii HOM05D004306 ORTHO05D005055 5.5e-235 817.4 448 84.6
CANSAT01G0675 Cannabis sativa HOM05D004306 ORTHO05D005055 9.4e-235 816.6 443 84.9
AUR62003989 Chenopodium quinoa HOM05D004306 ORTHO05D005055 1.2e-234 816.2 448 83.5
FAN23G0931 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.2e-234 816.2 448 83.3
Potri.005G145400 Populus trichocarpa HOM05D004306 ORTHO05D005055 2.1e-234 815.5 449 83.7
FAN26G3311 Fragaria x ananassa HOM05D004306 ORTHO05D005055 2.7e-234 815.1 448 83.5
CAN.G1075.22 Capsicum annuum HOM05D004306 ORTHO05D005055 3.6e-234 814.7 448 83.9
Cfa004112 Carpinus fangiana HOM05D004306 ORTHO05D005055 3.6e-234 814.7 448 83.3
Prupe.6G223000 Prunus persica HOM05D004306 ORTHO05D005055 4.7e-234 814.3 448 83.3
Nn1g04599 Nelumbo nucifera HOM05D004306 ORTHO05D005055 8.0e-234 813.5 448 83.0
GSVIVG01000135001 Vitis vinifera HOM05D004306 ORTHO05D005055 1.4e-233 812.8 443 85.1
FAN28G1176 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.8e-233 812.4 446 83.0
ClCG01G017440 Citrullus lanatus HOM05D004306 ORTHO05D005055 2.3e-233 812.0 448 83.3
MBI16_g09132_MAGBIO Magnolia biondii HOM05D004306 ORTHO05D005055 3.0e-233 811.6 442 84.8
GSVIVG01000137001 Vitis vinifera HOM05D004306 ORTHO05D005055 3.0e-233 811.6 443 85.6
AL7G13200 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 6.7e-233 810.4 448 83.3
AL7G13210 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 6.7e-233 810.4 452 81.6
Sed0025668 Sechium edule HOM05D004306 ORTHO05D005055 8.8e-233 810.1 448 83.0
Lj4A160T62 Lonicera japonica HOM05D004306 ORTHO05D005055 1.5e-232 809.3 447 83.4
HanXRQChr14g0449471 Helianthus annuus HOM05D004306 ORTHO05D005055 2.6e-232 808.5 443 85.1
CARHR245950 Cardamine hirsuta HOM05D004306 ORTHO05D005055 5.7e-232 807.4 448 82.4
FAN19G2263 Fragaria x ananassa HOM05D004306 ORTHO05D005055 5.7e-232 807.4 458 81.4
CARHR245960 Cardamine hirsuta HOM05D004306 ORTHO05D005055 3.7e-231 804.7 447 82.3
Eucgr.H02295 Eucalyptus grandis HOM05D004306 ORTHO05D005055 3.7e-231 804.7 443 83.5
Hund13938 Selenicereus undatus HOM05D004306 ORTHO05D005055 4.8e-231 804.3 471 79.6
BolC1t00152H Brassica oleracea HOM05D004306 ORTHO05D005055 8.2e-231 803.5 447 82.6
C01p01570 Brassica napus HOM05D004306 ORTHO05D005055 1.8e-230 802.4 447 82.3
A01p01390 Brassica napus HOM05D004306 ORTHO05D005055 5.3e-230 800.8 448 82.1
BraA01t00135Z Brassica rapa HOM05D004306 ORTHO05D005055 5.3e-230 800.8 448 82.1
Oeu014230.2 Olea europaea HOM05D004306 ORTHO05D005055 5.3e-230 800.8 453 80.6
BolC1t00153H Brassica oleracea HOM05D004306 ORTHO05D005055 7.0e-230 800.4 448 81.5
BcaNung05904 Brassica carinata HOM05D004306 ORTHO05D005055 9.1e-230 800.0 448 81.5
C01p01580 Brassica napus HOM05D004306 ORTHO05D005055 9.1e-230 800.0 448 81.5
AT4G37550 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 1.2e-229 799.7 453 80.8
Peaxi162Scf00264g00117 Petunia axillaris HOM05D004306 ORTHO05D005055 1.2e-229 799.7 443 82.8
THA.LOC104819873 Tarenaya hassleriana HOM05D004306 ORTHO05D005055 1.2e-229 799.7 483 77.8
A01p01400 Brassica napus HOM05D004306 ORTHO05D005055 1.6e-229 799.3 448 81.5
PGSC0003DMG400024965 Solanum tuberosum HOM05D004306 ORTHO05D005055 2.0e-229 798.9 443 83.3
BraA01t00136Z Brassica rapa HOM05D004306 ORTHO05D005055 2.7e-229 798.5 448 81.5
Thhalv10025180m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 2.7e-229 798.5 448 81.5
Lj4g0006645 Lotus japonicus HOM05D004306 ORTHO05D005055 5.9e-229 797.3 443 82.8
Sp7g35230 Schrenkiella parvula HOM05D004306 ORTHO05D005055 5.9e-229 797.3 448 81.7
Ciclev10025794m.g Citrus clementina HOM05D004306 ORTHO05D005055 7.7e-229 797.0 444 82.9
Aa31LG6G14430 Aethionema arabicum HOM05D004306 ORTHO05D005055 1.3e-228 796.2 453 80.6
AT4G37560 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 1.3e-228 796.2 448 81.5
Sp7g35240 Schrenkiella parvula HOM05D004306 ORTHO05D005055 1.3e-228 796.2 448 81.2
Carub.0007s0271 Capsella rubella HOM05D004306 ORTHO05D005055 1.7e-228 795.8 447 81.2
Haze_15301 Corylus avellana HOM05D004306 ORTHO05D005055 1.7e-228 795.8 524 72.9
Nitab4.5_0000651g0100 Nicotiana tabacum HOM05D004306 ORTHO05D005055 2.9e-228 795.0 443 82.2
Migut.L00204 Erythranthe guttata HOM05D004306 ORTHO05D005055 5.0e-228 794.3 449 82.2
Solyc02g092530.4 Solanum lycopersicum HOM05D004306 ORTHO05D005055 5.0e-228 794.3 443 83.1
Oeu040626.2 Olea europaea HOM05D004306 ORTHO05D005055 6.5e-228 793.9 453 80.6
EL10Ac6g15639 Beta vulgaris HOM05D004306 ORTHO05D005055 8.5e-228 793.5 448 82.1
Thhalv10025178m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 1.1e-227 793.1 448 81.2
arahy.Tifrunner.gnm1.ann1.GV60EB Arachis hypogaea HOM05D004306 ORTHO05D005055 2.5e-227 792.0 446 82.5
SalBow5G1134 Salvia bowleyana HOM05D004306 ORTHO05D005055 3.2e-227 791.6 448 81.9
SalBow5G1710 Salvia bowleyana HOM05D004306 ORTHO05D005055 4.2e-227 791.2 448 81.9
Nitab4.5_0006069g0040 Nicotiana tabacum HOM05D004306 ORTHO05D005055 7.2e-227 790.4 506 74.3
CDE04G2054 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 9.4e-227 790.0 445 82.7
Cc07_g06920 Coffea canephora HOM05D004306 ORTHO05D005055 2.7e-226 788.5 444 80.6
Sopen02g037110 Solanum pennellii HOM05D004306 ORTHO05D005055 3.6e-226 788.1 440 83.0
Lj4g0023143 Lotus japonicus HOM05D004306 ORTHO05D005055 6.1e-226 787.3 447 80.3
MSTRG.15357 Avicennia marina HOM05D004306 ORTHO05D005055 2.3e-225 785.4 443 81.9
SGA_v2.0_scaffold21G09395 Striga asiatica HOM05D004306 ORTHO05D005055 1.2e-224 783.1 443 80.8
RcHm_v2.0_Chr2g0107581 Rosa chinensis HOM05D004306 ORTHO05D005055 1.3e-223 779.6 449 80.6
Os01g0764900 Oryza sativa ssp. japonica HOM05D004306 ORTHO05D005055 1.7e-223 779.2 445 79.1
Zm00001eb370290 Zea mays HOM05D004306 ORTHO05D005055 5.4e-222 774.2 450 78.0
Sabra05G0116200 Salix brachista HOM05D004306 ORTHO05D005055 1.6e-221 772.7 494 74.1
vmacro05397 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 2.5e-219 765.4 442 80.8
BcaNung05906 Brassica carinata HOM05D004306 ORTHO05D005055 1.6e-218 762.7 447 79.4
BcaNung05905 Brassica carinata HOM05D004306 ORTHO05D005055 2.0e-216 755.7 447 78.1
unitig_748.g8394 Utricularia gibba HOM05D004306 ORTHO05D005055 2.7e-213 745.3 443 77.2
MELO3C007621.2 Cucumis melo HOM05D004306 ORTHO05D005055 2.9e-212 741.9 407 83.5
Hma1.2p1_0730F.1_g209845 Hydrangea macrophylla HOM05D004306 ORTHO05D005055 1.1e-211 740.0 448 77.7
DCAR_025786 Daucus carota HOM05D004306 ORTHO05D005055 3.7e-207 724.9 443 77.0
Psat0ss839g0200 Pisum sativum HOM05D004306 ORTHO05D005055 9.2e-206 720.3 380 86.6
CSS0047878 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 4.6e-205 718.0 443 76.1
Cre16.g691750 Chlamydomonas reinhardtii HOM05D004306 ORTHO05D005055 9.8e-200 700.3 443 74.0
Pp3c3_32950 Physcomitrium patens HOM05D004306 ORTHO05D005055 9.8e-200 700.3 446 71.7
SMO141G0231 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 9.8e-200 700.3 441 71.7
Cfa004110 Carpinus fangiana HOM05D004306 ORTHO05D005055 3.0e-196 688.7 460 72.6
Ah.02g125510 Amaranthus hybridus HOM05D004306 ORTHO05D005055 6.6e-196 687.6 452 72.8
ATR0019G017 Amborella trichopoda HOM05D004306 ORTHO05D005055 8.1e-194 680.6 377 81.4
HPP92_014148 Vanilla planifolia HOM05D004306 ORTHO05D005055 2.6e-192 675.6 383 81.2
CSS0039286 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 3.5e-181 638.6 444 68.7
Sc16g0000120 Simmondsia chinensis HOM05D004306 ORTHO05D005055 4.4e-176 621.7 334 86.5
CSS0041574 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 8.7e-172 607.4 447 67.8
HPP92_014166 Vanilla planifolia HOM05D004306 ORTHO05D005055 1.7e-159 566.6 428 66.1
arahy.Tifrunner.gnm1.ann1.HR4B5C Arachis hypogaea HOM05D004306 ORTHO05D005055 2.1e-154 549.7 298 85.2
Sc16g0000140 Simmondsia chinensis HOM05D004306 ORTHO05D005055 8.2e-154 547.7 295 85.8
Zm00001eb152190 Zea mays HOM05D004306 ORTHO05D005055 6.5e-151 538.1 316 76.6
COL.COLO4_11552 Corchorus olitorius HOM05D004306 ORTHO05D005055 8.7e-148 527.7 460 60.9
DCAR_025787 Daucus carota HOM05D004306 ORTHO05D005055 1.1e-137 494.2 283 80.2
Oeu013288.2 Olea europaea HOM05D004306 ORTHO05D005055 2.0e-131 473.4 455 54.9
SMO170G0023 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 3.0e-124 449.5 375 59.2
SEGI_32720 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.7e-119 433.7 290 68.3
ATR0019G021 Amborella trichopoda HOM05D004306 ORTHO05D005055 1.5e-102 377.5 275 65.5
MD00G1015700 Malus domestica HOM05D004306 ORTHO05D005055 6.0e-88 328.9 195 75.4
DCAR_000330 Daucus carota HOM05D004306 ORTHO05D005055 2.1e-77 293.9 162 82.1
EL10Ac5g12500 Beta vulgaris HOM05D004306 ORTHO05D005055 1.8e-68 264.2 140 87.1
Cfa025028 Carpinus fangiana HOM05D004306 ORTHO05D005055 1.5e-67 261.2 270 49.3
MD00G1015600 Malus domestica HOM05D004306 ORTHO05D005055 4.9e-66 256.1 198 64.6
SEGI_23023 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 4.9e-66 256.1 145 76.6
EL10Ac1g01850 Beta vulgaris HOM05D004306 ORTHO05D005055 1.2e-64 251.5 149 75.8
SEGI_27901 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 2.1e-64 250.8 146 77.4
arahy.Tifrunner.gnm1.ann1.ZW9ABU Arachis hypogaea HOM05D004306 ORTHO05D005055 1.1e-62 245.0 148 74.3
Sc16g0000130 Simmondsia chinensis HOM05D004306 ORTHO05D005055 1.5e-59 234.6 148 68.2
SEGI_13173 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 9.9e-59 231.9 189 58.7
COL.COLO4_11551 Corchorus olitorius HOM05D004306 ORTHO05D005055 6.2e-53 212.6 135 75.6
TPR.G23871 Trifolium pratense HOM05D004306 ORTHO05D005055 1.1e-46 191.8 111 79.3
RcHm_v2.0_Chr2g0107621 Rosa chinensis HOM05D004306 ORTHO05D005055 2.5e-46 190.7 136 66.2
CDE07G1667 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 1.3e-37 161.8 111 68.5
EL10Ac4g09102 Beta vulgaris HOM05D004306 ORTHO05D005055 2.1e-37 161.0 132 59.1
ATR0515G001 Amborella trichopoda HOM05D004306 ORTHO05D005055 6.7e-23 112.8 55 89.1
vmacro05396 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 8.8e-23 112.5 70 71.4
Cfa004111 Carpinus fangiana HOM05D004306 ORTHO05D005055 7.4e-22 109.4 74 71.6
AUR62003988 Chenopodium quinoa HOM05D004306 ORTHO05D005055 9.7e-22 109.0 69 71.0
FAN28G1106 Fragaria x ananassa HOM05D004306 ORTHO05D005055 4.8e-21 106.7 70 71.4
Lj4C160G10 Lonicera japonica HOM05D004306 ORTHO05D005055 1.4e-20 105.1 69 71.0
Dinv30076 Davidia involucrata HOM05D004306 ORTHO05D005055 7.7e-19 99.4 76 60.5
SGA_v2.0_scaffold21G09394 Striga asiatica HOM05D004306 ORTHO05D005055 5.0e-18 96.7 66 65.2
Psat5g012000 Pisum sativum HOM05D004306 ORTHO05D005055 8.5e-18 95.9 83 51.8
SEGI_03818 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.8e-15 88.2 67 56.7
Cc07_g06910 Coffea canephora HOM05D004306 ORTHO05D005055 2.4e-12 77.8 55 60.0
Nitab4.5_0000032g0200 Nicotiana tabacum HOM05D004306 ORTHO05D005055 5.3e-12 76.6 46 73.9
Eucgr.H02294 Eucalyptus grandis HOM05D004306 ORTHO05D005055 3.5e-11 73.9 70 50.0
EL10Ac4g09101 Beta vulgaris HOM05D004306 ORTHO05D005055 4.5e-11 73.6 43 72.1
Thecc.01G069900 Theobroma cacao HOM05D004306 ORTHO05D005055 9.4e-09 65.9 36 80.6
PRCOL_00001243 Prasinoderma coloniale HOM05D004306 ORTHO05D005055 3.6e-08 63.9 168 28.0


User provided reference genes

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