Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G4423 Papaver somniferum HOM05D004157 ORTHO05D004860 4.5e-144 514.6 267 100.0
PSO675G3214 Papaver somniferum HOM05D004157 ORTHO05D004860 6.1e-141 504.2 267 97.8
Nn5g30153 Nelumbo nucifera HOM05D004157 ORTHO05D004860 3.8e-119 431.8 268 82.1
Aqoxy5G01458 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 6.8e-116 421.0 267 81.3
TAR381G0601 Trochodendron aralioides HOM05D004157 ORTHO05D004860 1.3e-114 416.8 268 80.2
PGR142G1140 Punica granatum HOM05D004157 ORTHO05D004860 4.1e-113 411.8 267 77.5
GSVIVG01024109001 Vitis vinifera HOM05D004157 ORTHO05D004860 9.2e-113 410.6 267 78.7
PGR042G1356 Punica granatum HOM05D004157 ORTHO05D004860 1.6e-112 409.8 267 77.9
Prupe.8G159400 Prunus persica HOM05D004157 ORTHO05D004860 2.7e-112 409.1 267 76.4
Actinidia32087 Actinidia chinensis HOM05D004157 ORTHO05D004860 3.5e-112 408.7 267 80.5
TWI79G0156 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 3.5e-112 408.7 267 78.7
Hma1.2p1_1385F.1_g279670 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 1.3e-111 406.8 267 78.7
TWI75G1232 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 1.7e-111 406.4 267 78.3
Solyc01g111060.4 Solanum lycopersicum HOM05D004157 ORTHO05D004860 2.9e-111 405.6 267 76.0
Cc02_g16620 Coffea canephora HOM05D004157 ORTHO05D004860 3.9e-111 405.2 265 77.7
CANSAT25G0852 Cannabis sativa HOM05D004157 ORTHO05D004860 5.0e-111 404.8 267 76.0
QL11p047455 Quercus lobata HOM05D004157 ORTHO05D004860 1.5e-110 403.3 266 77.1
MD10G1116600 Malus domestica HOM05D004157 ORTHO05D004860 1.9e-110 402.9 267 75.3
Sopen01g053120 Solanum pennellii HOM05D004157 ORTHO05D004860 2.5e-110 402.5 267 74.9
Eucgr.G01748 Eucalyptus grandis HOM05D004157 ORTHO05D004860 2.1e-109 399.4 267 75.7
Potri.004G167200 Populus trichocarpa HOM05D004157 ORTHO05D004860 2.8e-109 399.1 268 76.5
FAN24G0875 Fragaria x ananassa HOM05D004157 ORTHO05D004860 3.6e-109 398.7 267 75.7
Phvul.009G000600 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 3.6e-109 398.7 263 75.7
vmacro22690 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 3.6e-109 398.7 255 78.8
Migut.I00211 Erythranthe guttata HOM05D004157 ORTHO05D004860 6.2e-109 397.9 265 76.6
FvH4_2g02150 Fragaria vesca HOM05D004157 ORTHO05D004860 1.0e-108 397.1 267 75.3
RcHm_v2.0_Chr6g0245651 Rosa chinensis HOM05D004157 ORTHO05D004860 1.8e-108 396.4 267 75.3
Thecc.02G068100 Theobroma cacao HOM05D004157 ORTHO05D004860 1.8e-108 396.4 267 75.3
Sabra09G0098500 Salix brachista HOM05D004157 ORTHO05D004860 2.3e-108 396.0 257 77.8
HPP92_002547 Vanilla planifolia HOM05D004157 ORTHO05D004860 3.1e-108 395.6 275 74.2
PGSC0003DMG400001636 Solanum tuberosum HOM05D004157 ORTHO05D004860 4.0e-108 395.2 267 74.9
Cfa005173 Carpinus fangiana HOM05D004157 ORTHO05D004860 6.8e-108 394.4 246 78.5
Gorai.005G251900 Gossypium raimondii HOM05D004157 ORTHO05D004860 6.8e-108 394.4 267 74.5
EL10Ac9g21458 Beta vulgaris HOM05D004157 ORTHO05D004860 8.9e-108 394.0 267 74.5
Glyma.06G005600 Glycine max HOM05D004157 ORTHO05D004860 2.0e-107 392.9 245 77.6
COL.COLO4_17245 Corchorus olitorius HOM05D004157 ORTHO05D004860 3.4e-107 392.1 304 67.8
FAN20G1131 Fragaria x ananassa HOM05D004157 ORTHO05D004860 3.4e-107 392.1 267 74.9
Sc18g0006720 Simmondsia chinensis HOM05D004157 ORTHO05D004860 3.4e-107 392.1 256 76.6
Medtr3g117700 Medicago truncatula HOM05D004157 ORTHO05D004860 7.5e-107 391.0 256 73.8
TPR.G38481 Trifolium pratense HOM05D004157 ORTHO05D004860 9.8e-107 390.6 246 77.2
Peaxi162Scf00362g01054 Petunia axillaris HOM05D004157 ORTHO05D004860 1.3e-106 390.2 266 74.8
Gohir.A03G202800 Gossypium hirsutum HOM05D004157 ORTHO05D004860 1.7e-106 389.8 267 73.4
Gohir.D02G224100 Gossypium hirsutum HOM05D004157 ORTHO05D004860 2.9e-106 389.0 267 73.4
Glyma.04G005900 Glycine max HOM05D004157 ORTHO05D004860 3.7e-106 388.7 257 75.1
Lj1g0011325 Lotus japonicus HOM05D004157 ORTHO05D004860 3.7e-106 388.7 259 74.1
MELO3C013382.2 Cucumis melo HOM05D004157 ORTHO05D004860 4.9e-106 388.3 257 78.2
Atru.chr5.3210 Acer truncatum HOM05D004157 ORTHO05D004860 1.4e-105 386.7 243 80.7
Lalb_Chr11g0061251 Lupinus albus HOM05D004157 ORTHO05D004860 1.4e-105 386.7 243 77.0
Psat5g003520 Pisum sativum HOM05D004157 ORTHO05D004860 4.1e-105 385.2 252 74.6
ECA234G4736 Erigeron canadensis HOM05D004157 ORTHO05D004860 5.4e-105 384.8 267 73.8
CiPaw.06G125600 Carya illinoinensis HOM05D000447 ORTHO05D000315 7.0e-105 384.4 253 77.9
Os06g0112200 Oryza sativa ssp. japonica HOM05D004157 ORTHO05D004860 9.2e-105 384.0 267 72.3
VMungo1309G1201 Vigna mungo HOM05D004157 ORTHO05D004860 1.2e-104 383.6 263 73.4
PSO675G5417 Papaver somniferum HOM05D004157 ORTHO05D004860 1.6e-104 383.3 267 74.2
Aqoxy2G00577 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 3.5e-104 382.1 252 78.6
MSTRG.5432 Avicennia marina HOM05D004157 ORTHO05D004860 3.5e-104 382.1 265 73.6
Eucgr.G01749 Eucalyptus grandis HOM05D004157 ORTHO05D004860 3.5e-104 382.1 269 74.3
HanXRQChr10g0294891 Helianthus annuus HOM05D004157 ORTHO05D004860 3.5e-104 382.1 245 78.4
Actinidia00586 Actinidia chinensis HOM05D004157 ORTHO05D004860 4.6e-104 381.7 270 75.9
CsaV3_7G000760 Cucumis sativus L. HOM05D004157 ORTHO05D004860 6.0e-104 381.3 257 76.7
Lsat_1_v5_gn_3_45521 Lactuca sativa HOM05D004157 ORTHO05D004860 6.0e-104 381.3 256 77.7
Lj5A185T60 Lonicera japonica HOM05D004157 ORTHO05D004860 1.0e-103 380.6 267 74.2
THA.LOC104807783 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 5.0e-103 378.3 267 71.2
Ah.01g009470 Amaranthus hybridus HOM05D004157 ORTHO05D004860 1.1e-102 377.1 287 68.6
vmacro17385 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 1.1e-102 377.1 283 70.7
Nitab4.5_0000283g0220 Nicotiana tabacum HOM05D004157 ORTHO05D004860 3.3e-102 375.6 265 74.0
CAN.G588.18 Capsicum annuum HOM05D004157 ORTHO05D004860 5.6e-102 374.8 234 79.1
Oeu055643.1 Olea europaea HOM05D004157 ORTHO05D004860 7.3e-102 374.4 234 80.8
Ca_15317_v3 Cicer arietinum L. HOM05D000600 ORTHO05D004860 1.2e-101 373.6 235 77.4
PSO541G6022 Papaver somniferum HOM05D004157 ORTHO05D004860 1.2e-101 373.6 267 73.0
SGA_v2.0_scaffold80G25867 Striga asiatica HOM05D004157 ORTHO05D004860 2.1e-101 372.9 235 80.0
vmacro02241 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 2.3e-100 369.4 262 72.5
arahy.Tifrunner.gnm1.ann1.66CLCN Arachis hypogaea HOM05D004157 ORTHO05D004860 5.2e-100 368.2 252 73.0
Manes.04G078800 Manihot esculenta HOM05D004157 ORTHO05D004860 5.2e-100 368.2 229 79.5
arahy.Tifrunner.gnm1.ann1.391TM2 Arachis hypogaea HOM05D004157 ORTHO05D004860 6.8e-100 367.9 258 71.3
unitig_0.g2353 Utricularia gibba HOM05D004157 ORTHO05D004860 1.5e-99 366.7 267 70.4
Thhalv10026821m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 3.4e-99 365.5 267 68.5
THA.LOC104819635 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 1.7e-98 363.2 267 66.7
AL7G10670 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 2.9e-98 362.5 267 67.0
Sed0001494 Sechium edule HOM05D000447 ORTHO05D000315 2.9e-98 362.5 239 78.2
ClCG02G004360 Citrullus lanatus HOM05D000447 ORTHO05D000315 3.7e-98 362.1 243 78.2
DCAR_028937 Daucus carota HOM05D004157 ORTHO05D004860 6.4e-98 361.3 248 73.0
Zm00001eb036610 Zea mays HOM05D004157 ORTHO05D004860 8.3e-98 360.9 246 74.0
Sp7g32610 Schrenkiella parvula HOM05D004157 ORTHO05D004860 1.4e-97 360.1 254 70.5
unitig_21.g20017 Utricularia gibba HOM05D004157 ORTHO05D004860 1.4e-97 360.1 260 71.2
Sed0017382 Sechium edule HOM05D004157 ORTHO05D004860 3.2e-97 359.0 231 79.7
VMungo1309G1253 Vigna mungo HOM05D004157 ORTHO05D004860 5.4e-97 358.2 245 72.2
DCAR_003693 Daucus carota HOM05D004157 ORTHO05D004860 7.1e-97 357.8 351 57.0
Thhalv10025990m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 1.2e-96 357.1 267 66.3
AT4G38800 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 1.6e-96 356.7 268 66.8
A08p16520 Brassica napus HOM05D004157 ORTHO05D004860 1.6e-96 356.7 267 66.7
BcaC01g00866 Brassica carinata HOM05D004157 ORTHO05D004860 6.0e-96 354.8 267 66.3
C03p85360 Brassica napus HOM05D004157 ORTHO05D004860 6.0e-96 354.8 267 66.3
AUR62010110 Chenopodium quinoa HOM05D004157 ORTHO05D004860 7.8e-96 354.4 337 59.6
BcaB03g11807 Brassica carinata HOM05D004157 ORTHO05D004860 1.7e-95 353.2 267 66.3
Lj9A389T64 Lonicera japonica HOM05D004157 ORTHO05D004860 3.9e-95 352.1 215 81.9
Carub.0007s0065 Capsella rubella HOM05D004157 ORTHO05D004860 8.6e-95 350.9 265 66.4
CARHR247930 Cardamine hirsuta HOM05D004157 ORTHO05D004860 1.9e-94 349.7 267 65.5
Aa31LG2G15700 Aethionema arabicum HOM05D004157 ORTHO05D004860 2.5e-94 349.4 267 65.9
Oeu002957.1 Olea europaea HOM05D004157 ORTHO05D004860 3.3e-94 349.0 227 80.2
CARHR243130 Cardamine hirsuta HOM05D004157 ORTHO05D004860 4.3e-94 348.6 245 70.6
ATR0089G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 5.6e-94 348.2 213 80.3
AL7G16370 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 5.6e-94 348.2 254 68.1
BolC3t20826H Brassica oleracea HOM05D004157 ORTHO05D004860 7.3e-94 347.8 267 65.2
Aa31LG6G16410 Aethionema arabicum HOM05D004157 ORTHO05D004860 9.5e-94 347.4 301 60.5
BcaC01g00256 Brassica carinata HOM05D004157 ORTHO05D004860 9.5e-94 347.4 267 65.9
ATR0095G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 2.8e-93 345.9 213 79.8
Duzib052G0280 Durio zibethinus HOM05D004157 ORTHO05D004860 2.8e-93 345.9 267 68.5
Glyma.06G005700 Glycine max HOM05D004157 ORTHO05D004860 2.8e-93 345.9 246 68.3
Hund00051 Selenicereus undatus HOM05D004157 ORTHO05D004860 2.8e-93 345.9 213 81.2
Duzib132G0743 Durio zibethinus HOM05D004157 ORTHO05D004860 4.7e-93 345.1 267 66.7
A08p24000 Brassica napus HOM05D004157 ORTHO05D004860 6.8e-92 341.3 267 65.5
Carub.0007s0546 Capsella rubella HOM05D004157 ORTHO05D004860 6.8e-92 341.3 254 65.7
Phvul.009G000700 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 6.8e-92 341.3 267 65.2
C03p77330 Brassica napus HOM05D004157 ORTHO05D004860 8.9e-92 340.9 267 65.5
BraA08t34357Z Brassica rapa HOM05D004157 ORTHO05D004860 8.9e-92 340.9 280 63.2
Zm00001eb175180 Zea mays HOM05D004157 ORTHO05D004860 2.6e-91 339.3 246 70.7
BcaB03g12226 Brassica carinata HOM05D004157 ORTHO05D004860 7.6e-91 337.8 267 63.7
BolC3t19986H Brassica oleracea HOM05D004157 ORTHO05D004860 7.6e-91 337.8 281 62.6
CDE02G2528 Ceratophyllum demersum HOM05D004157 ORTHO05D004860 2.3e-87 326.2 267 63.3
Prupe.8G159500 Prunus persica HOM05D004157 ORTHO05D004860 2.3e-87 326.2 276 64.5
Actinidia27843 Actinidia chinensis HOM05D004157 ORTHO05D004860 8.6e-87 324.3 256 69.5
HanXRQChr11g0346651 Helianthus annuus HOM05D004157 ORTHO05D004860 5.6e-86 321.6 245 65.7
SHI05673 Sapria himalayana HOM05D004157 ORTHO05D004860 1.6e-85 320.1 212 73.6
Ciclev10029225m.g Citrus clementina HOM05D004157 ORTHO05D004860 4.7e-85 318.5 249 68.7
SGA_v2.0_scaffold32G13240 Striga asiatica HOM05D004157 ORTHO05D004860 1.4e-84 317.0 264 64.4
Cpa.g.sc37.201 Carica papaya HOM05D004157 ORTHO05D004860 1.8e-84 316.6 267 65.2
PGR042G3985 Punica granatum HOM05D004157 ORTHO05D004860 3.1e-84 315.8 257 62.6
Sp7g37020 Schrenkiella parvula HOM05D004157 ORTHO05D004860 7.1e-81 304.7 267 62.9
AT4G34840 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 9.3e-81 304.3 204 73.0
Lsat_1_v5_gn_1_62181 Lactuca sativa HOM05D004157 ORTHO05D004860 1.2e-80 303.9 237 63.3
Potri.009G128700 Populus trichocarpa HOM05D004157 ORTHO05D004860 1.5e-78 297.0 202 74.8
Eucgr.G01750 Eucalyptus grandis HOM05D004157 ORTHO05D004860 2.5e-78 296.2 244 60.7
vmacro22693 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 1.3e-77 293.9 305 54.4
Pp3c14_1450 Physcomitrium patens HOM05D004157 ORTHO05D004860 4.0e-76 288.9 243 62.6
Rhsim11G0186900 Rhododendron simsii HOM05D004157 ORTHO05D004860 4.0e-76 288.9 206 69.9
AUR62013103 Chenopodium quinoa HOM05D004157 ORTHO05D004860 1.5e-75 287.0 183 79.8
Pp3c1_20870 Physcomitrium patens HOM05D004157 ORTHO05D004860 2.6e-75 286.2 246 61.4
Rhsim05G0063700 Rhododendron simsii HOM05D004157 ORTHO05D004860 2.6e-75 286.2 196 76.5
Pp3c26_5320 Physcomitrium patens HOM05D004157 ORTHO05D004860 3.0e-71 272.7 234 60.7
SEGI_37242 Sequoiadendron giganteum HOM05D004157 ORTHO05D004860 9.6e-70 267.7 201 67.2
BraA08t33620Z Brassica rapa HOM05D004157 ORTHO05D004860 8.1e-69 264.6 201 67.2
Mapoly0026s0093 Marchantia polymorpha HOM05D004157 ORTHO05D004860 8.1e-69 264.6 243 56.4
SMO147G0350 Selaginella moellendorffii HOM05D004157 ORTHO05D004860 2.4e-68 263.1 252 53.2
PGR042G2276 Punica granatum HOM05D004157 ORTHO05D004860 3.1e-68 262.7 246 58.1
AagrBONN_evm.TU.Sc2ySwM_368.2286 Anthoceros agrestis HOM05D004157 ORTHO05D004860 4.2e-65 252.3 245 55.1
Nitab4.5_0000980g0360 Nicotiana tabacum HOM05D004157 ORTHO05D004860 1.6e-61 240.4 146 82.2
Dinv04975 Davidia involucrata HOM05D000600 ORTHO05D000432 8.1e-61 238.0 139 84.9
vmacro02237 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 2.5e-57 226.5 207 60.9
MCO15G557 Micromonas commoda HOM05D004157 ORTHO05D004860 9.6e-54 214.5 244 48.4
Rhsim11G0185600 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.5e-51 207.2 187 59.9
Cre03.g162550 Chlamydomonas reinhardtii HOM05D004157 ORTHO05D004860 1.0e-50 204.5 234 46.6
Eucgr.L03396 Eucalyptus grandis HOM05D004157 ORTHO05D004860 3.7e-45 186.0 102 84.3
Rhsim11G0186700 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.1e-44 184.5 166 60.2
SalBow3G1540 Salvia bowleyana HOM05D004157 ORTHO05D004860 1.2e-43 181.0 122 75.4
MBI09_g11914_MAGBIO Magnolia biondii HOM05D004157 ORTHO05D004860 3.2e-41 172.9 105 81.0
TAR625G0759 Trochodendron aralioides HOM05D004157 ORTHO05D004860 6.7e-39 165.2 100 84.0
Hma1.2p1_0032F.1_g019710 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 5.0e-34 149.1 148 56.8
PRCOL_00006969 Prasinoderma coloniale HOM05D004157 ORTHO05D004860 1.1e-30 137.9 238 39.1
Haze_02206 Corylus avellana HOM05D000447 ORTHO05D000315 1.1e-28 131.3 84 81.0
TAR625G0858 Trochodendron aralioides HOM05D004157 ORTHO05D004860 1.3e-26 124.4 180 46.1
C07p63580 Brassica napus HOM05D004157 ORTHO05D004860 2.5e-25 120.2 118 54.2
BolC7t46771H Brassica oleracea HOM05D004157 ORTHO05D004860 2.5e-25 120.2 118 54.2
arahy.Tifrunner.gnm1.ann1.R1P6K1 Arachis hypogaea HOM05D004157 ORTHO05D004860 4.0e-23 112.8 160 41.2
Medtr0173s0020 Medicago truncatula HOM05D004157 ORTHO05D004860 1.5e-22 110.9 82 68.3
SalBow3G3146 Salvia bowleyana HOM05D004157 ORTHO05D004860 5.7e-22 109.0 142 47.9
Glyma.04G006001 Glycine max HOM05D004157 ORTHO05D004860 3.1e-20 103.2 66 69.7
Aqoxy6G02338 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 7.7e-19 98.6 95 55.8
Rhsim01G0041000 Rhododendron simsii HOM05D004157 ORTHO05D004860 5.5e-17 92.4 66 75.8
vmacro02118 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 6.1e-16 89.0 83 55.4
CBR_g20180 Chara braunii HOM05D004157 ORTHO05D004860 1.1e-12 78.2 286 27.3
HPP92_002565 Vanilla planifolia HOM05D004157 ORTHO05D004860 2.7e-08 63.5 123 40.7
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 3.0e-07 60.1 35 85.7
Rhsim11G0185500 Rhododendron simsii HOM05D004157 ORTHO05D004860 3.0e-07 60.1 31 71.0
Ca_29445_v3 Cicer arietinum L. HOM05D004157 ORTHO05D148328 6.8e-07 58.9 206 23.8


User provided reference genes

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