Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G4265 Papaver somniferum HOM05D006797 ORTHO05D007696 1.6e-53 212.6 114 100.0
PSO675G1942 Papaver somniferum HOM05D006797 ORTHO05D007696 3.5e-53 211.5 114 99.1
TAR626G0010 Trochodendron aralioides HOM05D006797 ORTHO05D007696 4.0e-25 118.2 121 62.0
Manes.03G071800 Manihot esculenta HOM05D006797 ORTHO05D007696 7.6e-24 114.0 115 59.1
Cc09_g04790 Coffea canephora HOM05D006797 ORTHO05D007696 6.4e-23 110.9 116 56.9
AUR62042807 Chenopodium quinoa HOM05D006797 ORTHO05D007696 1.4e-22 109.8 111 57.7
Sc24g0002860 Simmondsia chinensis HOM05D006797 ORTHO05D007696 9.3e-22 107.1 117 57.3
SGA_v2.0_scaffold60G20810 Striga asiatica HOM05D006797 ORTHO05D007696 9.3e-22 107.1 116 51.7
MSTRG.8842 Avicennia marina HOM05D006797 ORTHO05D007696 1.2e-21 106.7 116 56.9
Ah.15g091850 Amaranthus hybridus HOM05D006797 ORTHO05D007696 1.6e-21 106.3 117 56.4
SGA_v2.0_scaffold44G16576 Striga asiatica HOM05D001006 ORTHO05D000868 2.7e-21 105.5 115 56.5
PGR042G0784 Punica granatum HOM05D006797 ORTHO05D007696 1.3e-20 103.2 124 52.4
ECA248G3234 Erigeron canadensis HOM05D006797 ORTHO05D007696 2.3e-20 102.4 114 55.3
EL10Ac7g17249 Beta vulgaris HOM05D006797 ORTHO05D007696 1.1e-19 100.1 117 54.7
Hma1.2p1_1220F.1_g268030 Hydrangea macrophylla HOM05D006797 ORTHO05D007696 1.5e-19 99.8 121 54.5
ClCG01G025860 Citrullus lanatus HOM05D006797 ORTHO05D007696 2.5e-19 99.0 121 52.1
CSS0049260 Camellia sinensis var. sinensis HOM05D006797 ORTHO05D007696 3.3e-19 98.6 126 52.4
Lsat_1_v5_gn_3_103300 Lactuca sativa HOM05D006797 ORTHO05D007696 4.3e-19 98.2 105 56.2
Aqoxy3G03581 Aquilegia oxysepala HOM05D006409 ORTHO05D008250 5.6e-19 97.8 124 52.4
Migut.F00519 Erythranthe guttata HOM05D006797 ORTHO05D007696 5.6e-19 97.8 116 54.3
TPR.G27392 Trifolium pratense HOM05D006797 ORTHO05D007696 7.3e-19 97.4 122 56.6
Ciclev10017227m.g Citrus clementina HOM05D006797 ORTHO05D007696 1.3e-18 96.7 122 54.9
HanXRQChr12g0377351 Helianthus annuus HOM05D006797 ORTHO05D007696 1.6e-18 96.3 114 55.3
Lalb_Chr07g0188191 Lupinus albus HOM05D006797 ORTHO05D007696 1.6e-18 96.3 119 55.5
Sed0011432 Sechium edule HOM05D006797 ORTHO05D007696 1.6e-18 96.3 119 52.9
Oeu036765.2 Olea europaea HOM05D006797 ORTHO05D007696 2.1e-18 95.9 125 49.6
Psat7g087040 Pisum sativum HOM05D006797 ORTHO05D007696 2.8e-18 95.5 122 51.6
Phvul.002G187600 Phaseolus vulgaris HOM05D006797 ORTHO05D007696 3.6e-18 95.1 119 53.8
MELO3C007002.2 Cucumis melo HOM05D006797 ORTHO05D007696 8.1e-18 94.0 121 47.9
TWI38G0311 Tripterygium wilfordii HOM05D006797 ORTHO05D007696 1.4e-17 93.2 117 53.0
CAN.G809.30 Capsicum annuum HOM05D006797 ORTHO05D007696 1.8e-17 92.8 116 55.2
Duzib211G0055 Durio zibethinus HOM05D006797 ORTHO05D007696 1.8e-17 92.8 129 51.2
Solyc02g082020.3 Solanum lycopersicum HOM05D006797 ORTHO05D007696 1.8e-17 92.8 115 54.8
Prupe.4G119300 Prunus persica HOM05D006797 ORTHO05D007696 2.4e-17 92.4 120 51.7
Glyma.08G089600 Glycine max HOM05D006797 ORTHO05D007696 4.0e-17 91.7 119 54.6
Sopen02g026660 Solanum pennellii HOM05D006797 ORTHO05D007696 4.0e-17 91.7 115 53.9
Glyma.05G134500 Glycine max HOM05D006797 ORTHO05D007696 5.3e-17 91.3 121 52.9
arahy.Tifrunner.gnm1.ann1.30I9D2 Arachis hypogaea HOM05D006797 ORTHO05D007696 6.9e-17 90.9 115 55.7
arahy.Tifrunner.gnm1.ann1.3X9X11 Arachis hypogaea HOM05D006797 ORTHO05D007696 6.9e-17 90.9 115 55.7
CsaV3_6G053080 Cucumis sativus L. HOM05D006797 ORTHO05D007696 6.9e-17 90.9 122 48.4
THA.LOC104812696 Tarenaya hassleriana HOM05D006797 ORTHO05D007696 9.0e-17 90.5 126 52.4
CiPaw.10G107100 Carya illinoinensis HOM05D006797 ORTHO05D007696 1.5e-16 89.7 118 50.8
Medtr4g094782 Medicago truncatula HOM05D006797 ORTHO05D007696 1.5e-16 89.7 120 51.7
Nitab4.5_0003902g0030 Nicotiana tabacum HOM05D006797 ORTHO05D007696 2.0e-16 89.4 116 54.3
RcHm_v2.0_Chr5g0021541 Rosa chinensis HOM05D006797 ORTHO05D007696 2.0e-16 89.4 121 51.2
VMungo0251G2933 Vigna mungo HOM05D006797 ORTHO05D007696 2.0e-16 89.4 105 56.2
PGSC0003DMG400007337 Solanum tuberosum HOM05D006797 ORTHO05D007696 2.6e-16 89.0 115 52.2
CDE05G1867 Ceratophyllum demersum HOM05D006797 ORTHO05D007696 3.4e-16 88.6 119 49.6
QL11p011767 Quercus lobata HOM05D006797 ORTHO05D007696 3.4e-16 88.6 122 49.2
Hund23985 Selenicereus undatus HOM05D006797 ORTHO05D007696 4.5e-16 88.2 116 53.4
Dinv03172 Davidia involucrata HOM05D006797 ORTHO05D007696 5.8e-16 87.8 127 48.8
CANSAT35G2044 Cannabis sativa HOM05D006797 ORTHO05D007696 7.6e-16 87.4 123 47.2
Peaxi162Scf00036g02019 Petunia axillaris HOM05D006797 ORTHO05D007696 7.6e-16 87.4 116 56.0
SalBow3G3973 Salvia bowleyana HOM05D006797 ORTHO05D007696 1.3e-15 86.7 113 50.4
GSVIVG01012170001 Vitis vinifera HOM05D006797 ORTHO05D007696 1.3e-15 86.7 123 48.0
Nn1g05854 Nelumbo nucifera HOM05D006797 ORTHO05D007696 1.7e-15 86.3 118 51.7
Cpa.g.sc30.90 Carica papaya HOM05D006797 ORTHO05D007696 2.9e-15 85.5 123 53.7
MD10G1226000 Malus domestica HOM05D006797 ORTHO05D007696 2.9e-15 85.5 120 52.5
Ca_18220_v3 Cicer arietinum L. HOM05D006797 ORTHO05D007696 4.9e-15 84.7 124 51.6
Nitab4.5_0000632g0020 Nicotiana tabacum HOM05D006797 ORTHO05D007696 4.9e-15 84.7 115 51.3
Gorai.010G130400 Gossypium raimondii HOM05D006797 ORTHO05D007696 1.1e-14 83.6 126 47.6
Aa31LG6G12300 Aethionema arabicum HOM05D006797 ORTHO05D007696 1.4e-14 83.2 118 50.8
Gohir.A06G110200 Gossypium hirsutum HOM05D006797 ORTHO05D007696 1.4e-14 83.2 126 47.6
Potri.003G155400 Populus trichocarpa HOM05D006797 ORTHO05D007696 1.4e-14 83.2 120 43.3
Gohir.D06G114100 Gossypium hirsutum HOM05D006797 ORTHO05D007696 4.2e-14 81.6 126 46.8
Rhsim13G0134800 Rhododendron simsii HOM05D006797 ORTHO05D007696 5.4e-14 81.3 129 43.4
Lj4g0013366 Lotus japonicus HOM05D006797 ORTHO05D007696 9.3e-14 80.5 100 52.0
A07p09570 Brassica napus HOM05D006797 ORTHO05D007696 2.7e-13 79.0 114 51.8
BraA07t28751Z Brassica rapa HOM05D006797 ORTHO05D007696 2.7e-13 79.0 114 51.8
Atru.chr10.261 Acer truncatum HOM05D006797 ORTHO05D007696 7.9e-13 77.4 121 43.0
AL1G45170 Arabidopsis lyrata HOM05D006797 ORTHO05D007696 1.3e-12 76.6 120 48.3
FAN21G4013 Fragaria x ananassa HOM05D006797 ORTHO05D007696 3.0e-12 75.5 117 42.7
FAN16G2513 Fragaria x ananassa HOM05D006797 ORTHO05D007696 3.9e-12 75.1 117 42.7
FAN25G1182 Fragaria x ananassa HOM05D006797 ORTHO05D007696 3.9e-12 75.1 117 42.7
Zm00001eb430680 Zea mays HOM05D006797 ORTHO05D007696 3.9e-12 75.1 115 48.7
AT1G30880 Arabidopsis thaliana HOM05D006797 ORTHO05D007696 5.1e-12 74.7 121 51.2
Dinv02379 Davidia involucrata HOM05D006797 ORTHO05D007696 5.1e-12 74.7 106 50.0
BraA08t33088Z Brassica rapa HOM05D006797 ORTHO05D007696 6.7e-12 74.3 118 49.2
Carub.0001s2922 Capsella rubella HOM05D006797 ORTHO05D007696 6.7e-12 74.3 120 50.0
CARHR030370 Cardamine hirsuta HOM05D006797 ORTHO05D007696 6.7e-12 74.3 121 47.1
FvH4_3g13200 Fragaria vesca HOM05D006797 ORTHO05D007696 6.7e-12 74.3 117 42.7
FAN11G3985 Fragaria x ananassa HOM05D006797 ORTHO05D007696 6.7e-12 74.3 117 42.7
BcaC07g37796 Brassica carinata HOM05D006797 ORTHO05D007696 8.7e-12 73.9 117 50.4
A08p10910 Brassica napus HOM05D006797 ORTHO05D007696 8.7e-12 73.9 117 50.4
Thhalv10009126m.g Eutrema salsugineum HOM05D006797 ORTHO05D007696 8.7e-12 73.9 118 48.3
Os04g0611300 Oryza sativa ssp. japonica HOM05D006797 ORTHO05D007696 8.7e-12 73.9 114 48.2
BcaB07g32754 Brassica carinata HOM05D006797 ORTHO05D007696 1.5e-11 73.2 119 49.6
BcaB04g18200 Brassica carinata HOM05D006797 ORTHO05D007696 2.5e-11 72.4 122 49.2
BolC7t41975H Brassica oleracea HOM05D006797 ORTHO05D007696 3.3e-11 72.0 119 50.4
Zm00001eb442340 Zea mays HOM05D006797 ORTHO05D007696 3.3e-11 72.0 98 52.0
A09p35270 Brassica napus HOM05D006797 ORTHO05D007696 5.6e-11 71.2 116 50.0
Sp1g26780 Schrenkiella parvula HOM05D006797 ORTHO05D007696 5.6e-11 71.2 118 47.5
C07p14730 Brassica napus HOM05D006797 ORTHO05D007696 7.4e-11 70.9 119 49.6
BcaC05g27127 Brassica carinata HOM05D006797 ORTHO05D007696 9.6e-11 70.5 119 47.9
C05p30120 Brassica napus HOM05D006797 ORTHO05D007696 9.6e-11 70.5 119 47.9
COL.COLO4_25039 Corchorus olitorius HOM05D006797 ORTHO05D007696 1.3e-10 70.1 99 51.5
Zm00001eb071100 Zea mays HOM05D006797 ORTHO05D007696 1.3e-10 70.1 115 47.8
MBI18_g20922_MAGBIO Magnolia biondii HOM05D006797 ORTHO05D007696 1.6e-10 69.7 119 43.7
HPP92_013198 Vanilla planifolia HOM05D006797 ORTHO05D007696 1.6e-10 69.7 126 43.7
BolC8t48187H Brassica oleracea HOM05D006797 ORTHO05D007696 2.1e-10 69.3 119 48.7
unitig_37.g11921 Utricularia gibba HOM05D006797 ORTHO05D007696 4.8e-10 68.2 48 75.0
Haze_24216 Corylus avellana HOM05D006797 ORTHO05D007696 1.8e-09 66.2 133 39.1
DCAR_001265 Daucus carota HOM05D006797 ORTHO05D007696 1.8e-09 66.2 97 49.5
vmacro03563 Vaccinium macrocarpon HOM05D006797 ORTHO05D007696 4.0e-09 65.1 76 53.9
BraA09t39054Z Brassica rapa HOM05D006797 ORTHO05D007696 5.3e-09 64.7 122 45.9
Thecc.02G002300 Theobroma cacao HOM05D006797 ORTHO05D007696 1.2e-08 63.5 46 71.7
BolC5t31749H Brassica oleracea HOM05D006797 ORTHO05D007696 2.0e-08 62.8 125 43.2
Haze_05201 Corylus avellana HOM05D000001 ORTHO05D010268 2.0e-08 62.8 49 65.3
Haze_15747 Corylus avellana HOM05D006797 ORTHO05D007696 2.0e-08 62.8 49 65.3
Sabra03G0112800 Salix brachista HOM05D006797 ORTHO05D007696 3.4e-08 62.0 49 63.3
ATR0763G022 Amborella trichopoda HOM05D006797 ORTHO05D007696 1.7e-07 59.7 114 40.4
SMO167G0044 Selaginella moellendorffii HOM05D006797 ORTHO05D007696 4.9e-07 58.2 48 68.8
Hma1.2p1_0747F.1_g212490 Hydrangea macrophylla HOM05D006797 ORTHO05D007696 8.4e-07 57.4 77 50.6


User provided reference genes

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