Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G3575 Papaver somniferum HOM05D005008 ORTHO05D006092 7.0e-107 390.6 189 100.0
PSO339G0217 Papaver somniferum HOM05D005008 ORTHO05D006092 8.3e-52 207.6 132 81.8
PSO017G3706 Papaver somniferum HOM05D005008 ORTHO05D006092 2.3e-49 199.5 115 87.8
PSO017G4122 Papaver somniferum HOM05D005008 ORTHO05D006092 8.6e-49 197.6 144 72.9
PSO478G0762 Papaver somniferum HOM05D005008 ORTHO05D006092 6.2e-47 191.4 121 81.8
PSO325G0018 Papaver somniferum HOM05D005008 ORTHO05D006092 1.9e-43 179.9 104 83.7
PSO447G0120 Papaver somniferum HOM05D005008 ORTHO05D006092 2.4e-43 179.5 103 83.5
PSO144G0132 Papaver somniferum HOM05D005008 ORTHO05D006092 1.2e-42 177.2 104 82.7
Aqoxy7G02777 Aquilegia oxysepala HOM05D005008 ORTHO05D006092 4.9e-28 128.6 97 60.8
DCAR_021985 Daucus carota HOM05D005008 ORTHO05D006092 3.5e-26 122.5 104 51.0
Hma1.2p1_0101F.1_g049710 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 3.5e-26 122.5 95 57.9
Atru.chr3.3067 Acer truncatum HOM05D005008 ORTHO05D006092 4.6e-26 122.1 95 57.9
CSS0002518 Camellia sinensis var. sinensis HOM05D005008 ORTHO05D006092 8.7e-25 117.9 95 55.8
CDE04G3167 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 1.1e-24 117.5 96 55.2
CDE05G0523 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 1.1e-24 117.5 96 55.2
EL10Ac7g16268 Beta vulgaris HOM05D005008 ORTHO05D006092 1.5e-24 117.1 95 56.8
MBI17_g21976_MAGBIO Magnolia biondii HOM05D000527 ORTHO05D000559 1.5e-24 117.1 97 54.6
MBI17_g21974_MAGBIO Magnolia biondii HOM05D005008 ORTHO05D006092 1.9e-24 116.7 142 42.3
Rhsim13G0198500 Rhododendron simsii HOM05D005008 ORTHO05D006092 1.9e-24 116.7 95 54.7
ATR1136G073 Amborella trichopoda HOM05D005008 ORTHO05D006092 2.5e-24 116.3 95 52.6
Nitab4.5_0015902g0010 Nicotiana tabacum HOM05D005008 ORTHO05D006092 2.5e-24 116.3 95 53.7
CAN.G1463.18 Capsicum annuum HOM05D005008 ORTHO05D006092 3.3e-24 115.9 95 52.6
Nitab4.5_0003644g0030 Nicotiana tabacum HOM05D005008 ORTHO05D006092 5.6e-24 115.2 95 52.6
TAR628G1298 Trochodendron aralioides HOM05D005008 ORTHO05D006092 7.4e-24 114.8 97 53.6
PGSC0003DMG400005906 Solanum tuberosum HOM05D005008 ORTHO05D006092 9.6e-24 114.4 95 51.6
THA.LOC104808952 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 9.6e-24 114.4 95 54.7
Peaxi162Scf00098g00148 Petunia axillaris HOM05D005008 ORTHO05D006092 1.3e-23 114.0 95 51.6
Peaxi162Scf00717g00217 Petunia axillaris HOM05D005008 ORTHO05D006092 1.3e-23 114.0 95 53.7
Thecc.09G268300 Theobroma cacao HOM05D005008 ORTHO05D006092 1.6e-23 113.6 95 54.7
Hund18808 Selenicereus undatus HOM05D005008 ORTHO05D006092 2.1e-23 113.2 95 52.6
ECA246G4934 Erigeron canadensis HOM05D005008 ORTHO05D006092 2.8e-23 112.8 95 54.7
Solyc06g073900.3 Solanum lycopersicum HOM05D005008 ORTHO05D006092 2.8e-23 112.8 95 50.5
Sopen06g030300 Solanum pennellii HOM05D005008 ORTHO05D006092 2.8e-23 112.8 95 50.5
AUR62001577 Chenopodium quinoa HOM05D005008 ORTHO05D006092 3.7e-23 112.5 95 55.8
Duzib168G2291 Durio zibethinus HOM05D005008 ORTHO05D006092 3.7e-23 112.5 95 53.7
Duzib170G0524 Durio zibethinus HOM05D005008 ORTHO05D006092 3.7e-23 112.5 95 55.8
Migut.D02371 Erythranthe guttata HOM05D005008 ORTHO05D006092 3.7e-23 112.5 96 54.2
Migut.D02374 Erythranthe guttata HOM05D005008 ORTHO05D006092 3.7e-23 112.5 96 54.2
Lsat_1_v5_gn_6_104840 Lactuca sativa HOM05D005008 ORTHO05D006092 3.7e-23 112.5 95 53.7
Lj2E351T1 Lonicera japonica HOM05D005008 ORTHO05D006092 3.7e-23 112.5 101 50.5
Sc21g0006720 Simmondsia chinensis HOM05D005008 ORTHO05D006092 3.7e-23 112.5 95 54.7
Dinv21730 Davidia involucrata HOM05D005008 ORTHO05D006092 4.8e-23 112.1 95 53.7
SGA_v2.0_scaffold114G31950 Striga asiatica HOM05D005008 ORTHO05D006092 4.8e-23 112.1 96 53.1
MSTRG.18800 Avicennia marina HOM05D005008 ORTHO05D006092 6.2e-23 111.7 96 55.2
Dinv18863 Davidia involucrata HOM05D005008 ORTHO05D006092 6.2e-23 111.7 95 53.7
Nitab4.5_0002426g0070 Nicotiana tabacum HOM05D005008 ORTHO05D006092 6.2e-23 111.7 95 52.6
unitig_746.g26601 Utricularia gibba HOM05D005008 ORTHO05D006092 6.2e-23 111.7 96 54.2
Gohir.A08G007400 Gossypium hirsutum HOM05D005008 ORTHO05D006092 8.1e-23 111.3 95 54.7
Sc12g0000410 Simmondsia chinensis HOM05D005008 ORTHO05D006092 8.1e-23 111.3 96 55.2
MSTRG.21002 Avicennia marina HOM05D005008 ORTHO05D006092 1.1e-22 110.9 96 54.2
Sopen11g029460 Solanum pennellii HOM05D005008 ORTHO05D006092 1.1e-22 110.9 95 50.5
PGSC0003DMG400002990 Solanum tuberosum HOM05D005008 ORTHO05D006092 1.1e-22 110.9 95 50.5
unitig_899.g15386 Utricularia gibba HOM05D005008 ORTHO05D006092 1.1e-22 110.9 96 53.1
Nitab4.5_0005569g0020 Nicotiana tabacum HOM05D005008 ORTHO05D006092 1.4e-22 110.5 95 51.6
CsaV3_1G043620 Cucumis sativus L. HOM05D005008 ORTHO05D006092 1.8e-22 110.2 95 52.6
Gohir.D08G017500 Gossypium hirsutum HOM05D005008 ORTHO05D006092 1.8e-22 110.2 95 54.7
Gorai.004G011900 Gossypium raimondii HOM05D005008 ORTHO05D006092 1.8e-22 110.2 95 54.7
HanXRQChr05g0163331 Helianthus annuus HOM05D005008 ORTHO05D006092 1.8e-22 110.2 95 53.7
MELO3C015091.2 Cucumis melo HOM05D005008 ORTHO05D006092 3.1e-22 109.4 95 52.6
PGR083G2197 Punica granatum HOM05D005008 ORTHO05D006092 3.1e-22 109.4 95 53.7
Solyc11g071790.2 Solanum lycopersicum HOM05D005008 ORTHO05D006092 3.1e-22 109.4 95 50.5
Eucgr.J00592 Eucalyptus grandis HOM05D005008 ORTHO05D006092 6.9e-22 108.2 95 53.7
FAN04G2231 Fragaria x ananassa HOM05D005008 ORTHO05D006092 6.9e-22 108.2 95 53.7
FAN08G1342 Fragaria x ananassa HOM05D005008 ORTHO05D006092 6.9e-22 108.2 95 53.7
FAN13G1722 Fragaria x ananassa HOM05D005008 ORTHO05D006092 6.9e-22 108.2 95 53.7
MD03G1160100 Malus domestica HOM05D005008 ORTHO05D006092 6.9e-22 108.2 95 51.6
Potri.009G001100 Populus trichocarpa HOM05D005008 ORTHO05D006092 6.9e-22 108.2 128 46.1
Cc01_g07910 Coffea canephora HOM05D005008 ORTHO05D006092 9.0e-22 107.8 95 52.6
FAN18G0191 Fragaria x ananassa HOM05D005008 ORTHO05D006092 9.0e-22 107.8 95 53.7
RcHm_v2.0_Chr5g0049161 Rosa chinensis HOM05D005008 ORTHO05D006092 9.0e-22 107.8 95 53.7
A06p05480 Brassica napus HOM05D005008 ORTHO05D006092 1.2e-21 107.5 95 52.6
BraA06t23756Z Brassica rapa HOM05D005008 ORTHO05D006092 1.2e-21 107.5 95 52.6
Ca_18750_v3 Cicer arietinum L. HOM05D005008 ORTHO05D006092 2.0e-21 106.7 95 53.7
GSVIVG01028464001 Vitis vinifera HOM05D005008 ORTHO05D006092 2.0e-21 106.7 96 49.0
Ciclev10029485m.g Citrus clementina HOM05D005008 ORTHO05D006092 2.6e-21 106.3 95 50.5
RcHm_v2.0_Chr7g0230441 Rosa chinensis HOM05D005008 ORTHO05D006092 2.6e-21 106.3 95 51.6
Sabra09G0000700 Salix brachista HOM05D005008 ORTHO05D006092 2.6e-21 106.3 128 46.1
TPR.G38259 Trifolium pratense HOM05D005008 ORTHO05D006092 2.6e-21 106.3 95 53.7
TPR.G27448 Trifolium pratense HOM05D005008 ORTHO05D006092 3.4e-21 105.9 95 53.7
Thhalv10019305m.g Eutrema salsugineum HOM05D005008 ORTHO05D006092 4.5e-21 105.5 95 51.6
Manes.11G103800 Manihot esculenta HOM05D005008 ORTHO05D006092 4.5e-21 105.5 95 51.6
Sp1g07130 Schrenkiella parvula HOM05D005008 ORTHO05D006092 4.5e-21 105.5 95 51.6
Sed0018780 Sechium edule HOM05D005008 ORTHO05D006092 5.8e-21 105.1 95 50.5
THA.LOC104815294 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 5.8e-21 105.1 123 44.7
AT1G08480 Arabidopsis thaliana HOM05D005008 ORTHO05D006092 7.6e-21 104.8 95 50.5
Lalb_Chr05g0219631 Lupinus albus HOM05D005008 ORTHO05D006092 7.6e-21 104.8 134 42.5
MD11G1175100 Malus domestica HOM05D005008 ORTHO05D006092 1.3e-20 104.0 95 49.5
vmacro04058 Vaccinium macrocarpon HOM05D005008 ORTHO05D006092 1.3e-20 104.0 95 51.6
Carub.0001s0784 Capsella rubella HOM05D005008 ORTHO05D006092 1.7e-20 103.6 95 50.5
CARHR008370 Cardamine hirsuta HOM05D005008 ORTHO05D006092 1.7e-20 103.6 95 50.5
ClCG03G012390 Citrullus lanatus HOM05D005008 ORTHO05D006092 2.2e-20 103.2 95 48.4
Glyma.20G018300 Glycine max HOM05D005008 ORTHO05D006092 2.2e-20 103.2 95 50.5
Psat7g129160 Pisum sativum HOM05D005008 ORTHO05D006092 2.2e-20 103.2 95 51.6
Zm00001eb260600 Zea mays HOM05D005008 ORTHO05D006092 2.2e-20 103.2 96 46.9
BcaC07g38394 Brassica carinata HOM05D005008 ORTHO05D006092 2.9e-20 102.8 95 50.5
A08p35120 Brassica napus HOM05D005008 ORTHO05D006092 2.9e-20 102.8 95 50.5
C08p11520 Brassica napus HOM05D005008 ORTHO05D006092 2.9e-20 102.8 95 50.5
BolC8t48832H Brassica oleracea HOM05D005008 ORTHO05D006092 2.9e-20 102.8 95 50.5
BraA08t35421Z Brassica rapa HOM05D005008 ORTHO05D006092 2.9e-20 102.8 95 50.5
VMungo0251G1441 Vigna mungo HOM05D005008 ORTHO05D006092 2.9e-20 102.8 95 51.6
Zm00001eb173990 Zea mays HOM05D005008 ORTHO05D006092 3.8e-20 102.4 96 46.9
BcaB07g34092 Brassica carinata HOM05D005008 ORTHO05D006092 4.9e-20 102.1 95 49.5
C05p06590 Brassica napus HOM05D005008 ORTHO05D006092 4.9e-20 102.1 95 49.5
BolC5t29419H Brassica oleracea HOM05D005008 ORTHO05D006092 4.9e-20 102.1 95 49.5
CiPaw.13G126400 Carya illinoinensis HOM05D005008 ORTHO05D006092 4.9e-20 102.1 95 49.5
Oeu031444.1 Olea europaea HOM05D005008 ORTHO05D006092 4.9e-20 102.1 96 47.9
Prupe.6G148300 Prunus persica HOM05D005008 ORTHO05D006092 4.9e-20 102.1 95 48.4
Lalb_Chr16g0385131 Lupinus albus HOM05D005008 ORTHO05D006092 8.4e-20 101.3 134 41.0
Os08g0112800 Oryza sativa ssp. japonica HOM05D005008 ORTHO05D006092 8.4e-20 101.3 111 44.1
Aa31LG5G14080 Aethionema arabicum HOM05D005008 ORTHO05D006092 1.1e-19 100.9 95 49.5
Cfa010212 Carpinus fangiana HOM05D005008 ORTHO05D006092 1.1e-19 100.9 95 47.4
COL.COLO4_25364 Corchorus olitorius HOM05D005008 ORTHO05D006092 1.4e-19 100.5 94 51.1
BcaB03g13330 Brassica carinata HOM05D005008 ORTHO05D006092 1.9e-19 100.1 95 48.4
arahy.Tifrunner.gnm1.ann1.LRUS99 Arachis hypogaea HOM05D005008 ORTHO05D006092 2.5e-19 99.8 95 48.4
Medtr4g084320 Medicago truncatula HOM05D005008 ORTHO05D006092 2.5e-19 99.8 95 51.6
TWI31G0222 Tripterygium wilfordii HOM05D005008 ORTHO05D006092 3.2e-19 99.4 96 46.9
Lj2g0024950 Lotus japonicus HOM05D005008 ORTHO05D006092 4.2e-19 99.0 95 48.4
Aa31LG2G20300 Aethionema arabicum HOM05D005008 ORTHO05D006092 7.1e-19 98.2 95 48.4
Phvul.002G096700 Phaseolus vulgaris HOM05D005008 ORTHO05D006092 7.1e-19 98.2 135 40.7
Nn1g08680 Nelumbo nucifera HOM05D005008 ORTHO05D006092 2.7e-18 96.3 78 57.7
arahy.Tifrunner.gnm1.ann1.0IE2SQ Arachis hypogaea HOM05D005008 ORTHO05D006092 4.6e-18 95.5 94 47.9
Atru.chr5.2770 Acer truncatum HOM05D005008 ORTHO05D006092 6.0e-18 95.1 84 53.6
AL1G18910 Arabidopsis lyrata HOM05D005008 ORTHO05D006092 6.0e-18 95.1 147 41.5
SalBow6G2115 Salvia bowleyana HOM05D005008 ORTHO05D006092 7.9e-18 94.7 80 56.2
SEGI_09212 Sequoiadendron giganteum HOM05D005008 ORTHO05D006092 3.0e-17 92.8 96 43.8
arahy.Tifrunner.gnm1.ann1.L1LZAQ Arachis hypogaea HOM05D005008 ORTHO05D006092 1.9e-16 90.1 101 45.5
HPP92_002034 Vanilla planifolia HOM05D005008 ORTHO05D006092 7.4e-16 88.2 96 41.7
arahy.Tifrunner.gnm1.ann1.67HGNM Arachis hypogaea HOM05D005008 ORTHO05D006092 1.8e-14 83.6 81 48.1
FvH4_5g32770 Fragaria vesca HOM05D005008 ORTHO05D006092 4.0e-14 82.4 76 53.9
Mapoly0024s0049 Marchantia polymorpha HOM05D005008 ORTHO05D006092 2.6e-13 79.7 95 42.1
QL02p021765 Quercus lobata HOM05D005008 ORTHO05D006092 4.5e-13 79.0 76 48.7
Haze_23598 Corylus avellana HOM05D005008 ORTHO05D006092 2.2e-12 76.6 92 40.2
Ah.01g003330 Amaranthus hybridus HOM05D005008 ORTHO05D006092 4.9e-12 75.5 178 28.7
Pp3c7_24330 Physcomitrium patens HOM05D005008 ORTHO05D006092 1.4e-11 73.9 95 41.1
Pp3c1_6020 Physcomitrium patens HOM05D005008 ORTHO05D006092 7.1e-11 71.6 95 38.9
AUR62020205 Chenopodium quinoa HOM05D005008 ORTHO05D006092 1.1e-08 64.3 53 54.7
CBR_g29511 Chara braunii HOM05D005008 ORTHO05D006092 1.3e-07 60.8 95 33.7
Sed0017043 Sechium edule HOM05D005008 ORTHO05D006092 1.4e-06 57.4 54 44.4
PSO832G0221 Papaver somniferum HOM05D000389 ORTHO05D000287 4.1e-06 55.8 26 100.0


User provided reference genes

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