Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G3560 Papaver somniferum HOM05D004086 ORTHO05D004641 0.0e+00 1237.6 672 100.0
PSO675G7346 Papaver somniferum HOM05D004086 ORTHO05D004641 0.0e+00 1158.3 672 92.3
TAR628G1622 Trochodendron aralioides HOM05D004086 ORTHO05D004641 2.2e-139 500.4 698 47.7
GSVIVG01018995001 Vitis vinifera HOM05D004086 ORTHO05D004641 3.3e-135 486.5 694 44.5
Actinidia36545 Actinidia chinensis HOM05D004086 ORTHO05D004641 2.0e-132 477.2 690 45.9
CSS0022456 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 9.3e-130 468.4 704 47.6
CSS0048181 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 4.6e-129 466.1 704 47.4
Dinv39963 Davidia involucrata HOM05D004086 ORTHO05D004641 7.9e-129 465.3 707 44.0
Actinidia12113 Actinidia chinensis HOM05D004086 ORTHO05D004641 2.5e-127 460.3 688 46.8
Cc07_g09240 Coffea canephora HOM05D004086 ORTHO05D004641 5.3e-117 426.0 699 44.2
Manes.07G068600 Manihot esculenta HOM05D004086 ORTHO05D004641 5.3e-117 426.0 727 40.4
Gohir.A11G185700 Gossypium hirsutum HOM05D004086 ORTHO05D004641 2.0e-116 424.1 715 41.7
vmacro07910 Vaccinium macrocarpon HOM05D004086 ORTHO05D004641 4.5e-116 422.9 688 44.2
DCAR_025930 Daucus carota HOM05D004086 ORTHO05D004641 2.2e-115 420.6 697 41.2
Aqoxy6G01048 Aquilegia oxysepala HOM05D004086 ORTHO05D004641 2.9e-115 420.2 687 42.8
Gohir.D11G192200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 5.0e-115 419.5 709 41.2
Gorai.007G205200 Gossypium raimondii HOM05D004086 ORTHO05D004641 6.5e-115 419.1 709 41.2
Hma1.2p1_0400F.1_g144650 Hydrangea macrophylla HOM05D004086 ORTHO05D004641 8.5e-115 418.7 707 42.6
Duzib264G0994 Durio zibethinus HOM05D004086 ORTHO05D004641 3.2e-114 416.8 702 40.5
Thecc.01G039100 Theobroma cacao HOM05D004086 ORTHO05D004641 7.2e-114 415.6 716 40.6
Nn5g29538 Nelumbo nucifera HOM05D004086 ORTHO05D004641 1.0e-112 411.8 537 46.9
CsaV3_4G005180 Cucumis sativus L. HOM05D004086 ORTHO05D004641 1.4e-112 411.4 711 39.4
Ciclev10025048m.g Citrus clementina HOM05D004086 ORTHO05D004641 3.9e-112 409.8 693 40.0
TWI09G1017 Tripterygium wilfordii HOM05D004086 ORTHO05D004641 3.9e-112 409.8 714 39.8
Lj5A533G14 Lonicera japonica HOM05D004086 ORTHO05D004641 1.1e-111 408.3 648 42.0
Potri.007G028600 Populus trichocarpa HOM05D004086 ORTHO05D004641 1.1e-111 408.3 693 40.1
MELO3C017544.2 Cucumis melo HOM05D004086 ORTHO05D004641 1.5e-111 407.9 711 40.1
RcHm_v2.0_Chr2g0102021 Rosa chinensis HOM05D004086 ORTHO05D004641 1.7e-110 404.4 717 40.6
CANSAT01G2856 Cannabis sativa HOM05D004086 ORTHO05D004641 8.2e-110 402.1 703 41.0
Gohir.D11G227980 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.8e-109 401.0 709 40.5
Prupe.7G151600 Prunus persica HOM05D004086 ORTHO05D004641 5.3e-109 399.4 718 39.1
MSTRG.23544 Avicennia marina HOM05D004086 ORTHO05D004641 1.3e-107 394.8 693 39.4
MD02G1151400 Malus domestica HOM05D004086 ORTHO05D004641 3.8e-107 393.3 707 40.0
Nitab4.5_0008457g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 5.0e-107 392.9 700 40.9
EL10Ac7g17738 Beta vulgaris HOM05D004086 ORTHO05D004641 3.9e-104 383.3 677 39.9
Ah.15g091580 Amaranthus hybridus HOM05D004086 ORTHO05D004641 1.1e-103 381.7 665 39.4
Sabra07G0024800 Salix brachista HOM05D004086 ORTHO05D004641 1.1e-103 381.7 727 37.4
FvH4_1g13700 Fragaria vesca HOM05D004086 ORTHO05D004641 1.5e-103 381.3 707 38.2
FAN19G3131 Fragaria x ananassa HOM05D004086 ORTHO05D004641 2.0e-103 380.9 707 38.3
Sed0023254 Sechium edule HOM05D004086 ORTHO05D004641 5.7e-103 379.4 721 37.7
Sopen08g027080 Solanum pennellii HOM05D004086 ORTHO05D004641 9.7e-103 378.6 689 39.2
ClCG07G009030 Citrullus lanatus HOM05D004086 ORTHO05D004641 1.3e-102 378.3 714 38.8
Solyc08g078600.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 1.7e-102 377.9 688 39.1
ECA238G3830 Erigeron canadensis HOM05D004086 ORTHO05D004641 5.3e-101 372.9 674 39.3
PGSC0003DMG400004762 Solanum tuberosum HOM05D004086 ORTHO05D004641 5.3e-101 372.9 685 39.0
CAN.G1058.29 Capsicum annuum HOM05D004086 ORTHO05D004641 1.6e-100 371.3 698 39.3
FAN28G1508 Fragaria x ananassa HOM05D004086 ORTHO05D004641 2.6e-100 370.5 727 37.6
Gohir.D11G227900 Gossypium hirsutum HOM05D004086 ORTHO05D004641 5.9e-100 369.4 624 41.2
Nitab4.5_0010593g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.0e-99 368.6 765 37.0
COL.COLO4_22111 Corchorus olitorius HOM05D004086 ORTHO05D004641 1.3e-99 368.2 693 40.8
Rhsim03G0093700 Rhododendron simsii HOM05D004086 ORTHO05D004641 1.7e-99 367.9 727 38.9
FAN23G2825 Fragaria x ananassa HOM05D004086 ORTHO05D004641 2.5e-98 364.0 728 36.8
FAN26G0470 Fragaria x ananassa HOM05D004086 ORTHO05D004641 7.2e-98 362.5 713 37.2
Hund05506 Selenicereus undatus HOM05D004086 ORTHO05D004641 2.1e-97 360.9 674 37.2
Peaxi162Scf00515g00225 Petunia axillaris HOM05D004086 ORTHO05D004641 3.6e-97 360.1 685 38.4
Medtr5g019810 Medicago truncatula HOM05D004086 ORTHO05D004641 4.0e-96 356.7 708 36.9
Eucgr.H01260 Eucalyptus grandis HOM05D004086 ORTHO05D004641 8.8e-96 355.5 607 39.2
Glyma.11G009900 Glycine max HOM05D004086 ORTHO05D004641 1.5e-95 354.8 713 40.0
HanXRQChr09g0262111 Helianthus annuus HOM05D004086 ORTHO05D004641 3.3e-95 353.6 693 37.7
Ca_00390_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 4.4e-95 353.2 723 35.3
QL06p045466 Quercus lobata HOM05D004086 ORTHO05D004641 4.4e-95 353.2 689 38.5
ECA232G4057 Erigeron canadensis HOM05D004086 ORTHO05D001499 5.7e-95 352.8 693 37.5
Migut.H00181 Erythranthe guttata HOM05D004086 ORTHO05D004641 1.3e-94 351.7 693 39.2
THA.LOC104819797 Tarenaya hassleriana HOM05D004086 ORTHO05D004641 1.3e-94 351.7 694 37.9
Lalb_Chr20g0123501 Lupinus albus HOM05D004086 ORTHO05D004641 1.7e-94 351.3 701 37.9
Carub.0008s0941 Capsella rubella HOM05D004086 ORTHO05D004641 2.2e-94 350.9 580 39.5
VMungo1215G0116 Vigna mungo HOM05D004086 ORTHO05D004641 3.1e-93 347.1 722 38.2
AT5G49530 Arabidopsis thaliana HOM05D004086 ORTHO05D004641 4.1e-93 346.7 708 36.0
DCAR_023357 Daucus carota HOM05D004086 ORTHO05D004641 2.0e-92 344.4 694 37.0
Sp2g19840 Schrenkiella parvula HOM05D004086 ORTHO05D004641 2.0e-92 344.4 581 39.6
TPR.G18816 Trifolium pratense HOM05D004086 ORTHO05D004641 2.0e-92 344.4 714 35.7
Lj5g0019705 Lotus japonicus HOM05D004086 ORTHO05D004641 3.5e-92 343.6 691 36.3
CiPaw.02G015600 Carya illinoinensis HOM05D004086 ORTHO05D004641 1.3e-91 341.7 705 36.7
AUR62008836 Chenopodium quinoa HOM05D004086 ORTHO05D004641 7.2e-90 335.9 658 38.1
Phvul.002G040400 Phaseolus vulgaris HOM05D004086 ORTHO05D004641 1.6e-89 334.7 719 38.4
Sopen02g030230 Solanum pennellii HOM05D004086 ORTHO05D004641 1.0e-88 332.0 686 36.6
AUR62025406 Chenopodium quinoa HOM05D004086 ORTHO05D004641 1.8e-88 331.3 617 38.6
C07p39950 Brassica napus HOM05D004086 ORTHO05D004641 3.0e-88 330.5 591 38.4
BolC7t44527H Brassica oleracea HOM05D004086 ORTHO05D004641 3.0e-88 330.5 593 38.3
Solyc02g085560.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 3.0e-88 330.5 684 36.0
A06p38290 Brassica napus HOM05D004086 ORTHO05D004641 1.7e-86 324.7 674 36.8
Thhalv10003751m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 2.2e-86 324.3 576 38.0
BraA06t26744Z Brassica rapa HOM05D004086 ORTHO05D004641 4.8e-86 323.2 674 36.6
CARHR287960 Cardamine hirsuta HOM05D004086 ORTHO05D004641 3.5e-84 317.0 582 36.9
ATR0064G058 Amborella trichopoda HOM05D004086 ORTHO05D004641 1.0e-83 315.5 649 35.0
Aa31LG11G8330 Aethionema arabicum HOM05D004086 ORTHO05D004641 2.1e-81 307.8 710 36.2
Lsat_1_v5_gn_4_150860 Lactuca sativa HOM05D004086 ORTHO05D004641 1.4e-80 305.1 683 35.7
Mapoly0113s0019 Marchantia polymorpha HOM05D004086 ORTHO05D004641 2.6e-79 300.8 639 36.2
arahy.Tifrunner.gnm1.ann1.4T6GLU Arachis hypogaea HOM05D004086 ORTHO05D004641 3.4e-79 300.4 713 34.2
arahy.Tifrunner.gnm1.ann1.FS5W7P Arachis hypogaea HOM05D004086 ORTHO05D004641 3.7e-78 297.0 713 34.4
HPP92_015988 Vanilla planifolia HOM05D004086 ORTHO05D004641 1.8e-77 294.7 673 33.7
Nitab4.5_0001279g0090 Nicotiana tabacum HOM05D004086 ORTHO05D004641 2.4e-77 294.3 477 40.3
CAN.G358.119 Capsicum annuum HOM05D004086 ORTHO05D004641 1.6e-76 291.6 714 33.9
CDE05G2435 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 4.5e-76 290.0 408 43.6
AL8G23320 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 7.8e-76 289.3 581 36.0
Psat2g160960 Pisum sativum HOM05D004086 ORTHO05D004641 6.6e-75 286.2 656 34.8
Oeu053005.1 Olea europaea HOM05D004086 ORTHO05D004641 5.6e-74 283.1 566 36.4
PSO017G0414 Papaver somniferum HOM05D004086 ORTHO05D004641 7.3e-74 282.7 525 42.5
AagrBONN_evm.TU.Sc2ySwM_344.3508 Anthoceros agrestis HOM05D004086 ORTHO05D004641 2.8e-73 280.8 656 35.4
Pp3c2_15450 Physcomitrium patens HOM05D004086 ORTHO05D004641 1.4e-72 278.5 652 35.3
SMO203G0104 Selaginella moellendorffii HOM05D004086 ORTHO05D004641 5.2e-72 276.6 617 34.4
Atru.chr3.545 Acer truncatum HOM05D004086 ORTHO05D004641 6.4e-70 269.6 568 37.5
Ah.15g091670 Amaranthus hybridus HOM05D004086 ORTHO05D004641 2.7e-68 264.2 458 38.6
Haze_02099 Corylus avellana HOM05D004086 ORTHO05D004641 1.3e-67 261.9 637 35.2
CBR_g50911 Chara braunii HOM05D004086 ORTHO05D004641 2.3e-67 261.2 662 32.6
CBR_g50913 Chara braunii HOM05D004086 ORTHO05D004641 2.3e-67 261.2 662 32.6
Cpa.g.sc353.3 Carica papaya HOM05D004086 ORTHO05D004641 3.0e-67 260.8 360 44.4
Sc17g0002710 Simmondsia chinensis HOM05D004086 ORTHO05D004641 1.1e-66 258.8 359 44.3
unitig_52.g17585 Utricularia gibba HOM05D004086 ORTHO05D004641 1.1e-66 258.8 605 31.9
COL.COLO4_14865 Corchorus olitorius HOM05D004086 ORTHO05D004641 1.9e-66 258.1 489 40.1
SpUn0021_0010 Schrenkiella parvula HOM05D004086 ORTHO05D004641 4.3e-66 256.9 382 41.9
CBR_g22032 Chara braunii HOM05D004086 ORTHO05D004641 9.5e-66 255.8 656 32.2
Medtr5g026040 Medicago truncatula HOM05D004086 ORTHO05D004641 2.4e-61 241.1 502 36.1
Haze_15127 Corylus avellana HOM05D004086 ORTHO05D004641 5.4e-61 240.0 477 37.7
CDE10G1264 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.6e-60 238.4 694 31.3
Thhalv10023969m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 7.5e-55 219.5 513 34.5
AL5G27650 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 1.1e-50 205.7 469 34.5
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 1.1e-50 205.7 471 33.1
HPP92_026151 Vanilla planifolia HOM05D004086 ORTHO05D004641 1.9e-50 204.9 432 33.8
Lsat_1_v5_gn_4_150881 Lactuca sativa HOM05D004086 ORTHO05D004641 3.1e-48 197.6 585 30.1
Nitab4.5_0004445g0020 Nicotiana tabacum HOM05D004086 ORTHO05D004641 8.9e-48 196.1 313 38.7
FvH4_2g10200 Fragaria vesca HOM05D004086 ORTHO05D004641 2.2e-46 191.4 479 32.8
MD15G1266000 Malus domestica HOM05D004086 ORTHO05D004641 4.6e-44 183.7 544 32.9
Zm00001eb269020 Zea mays HOM05D004086 ORTHO05D004641 1.2e-39 169.1 357 35.0
CDE10G0017 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 4.4e-39 167.2 237 44.3
CARHR050710 Cardamine hirsuta HOM05D004086 ORTHO05D004641 2.1e-36 158.3 218 38.5
Zm00001eb269010 Zea mays HOM05D004086 ORTHO05D004641 1.1e-32 146.0 219 41.6
SEGI_33702 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 5.4e-29 133.7 321 33.3
Haze_02100 Corylus avellana HOM05D004086 ORTHO05D004641 5.1e-27 127.1 150 52.0
BcaC03g17736 Brassica carinata HOM05D004086 ORTHO05D004641 2.5e-26 124.8 305 33.8
Ca_29955_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 2.1e-25 121.7 370 26.5
PGSC0003DMG400012686 Solanum tuberosum HOM05D004086 ORTHO05D004641 4.0e-24 117.5 204 33.3
A02p38220 Brassica napus HOM05D004086 ORTHO05D004641 9.0e-24 116.3 213 38.5
FAN24G1278 Fragaria x ananassa HOM05D004086 ORTHO05D004641 5.8e-23 113.6 445 27.6
C02p57460 Brassica napus HOM05D004086 ORTHO05D004641 2.9e-22 111.3 304 31.6
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 3.8e-22 110.9 187 38.0
AL253U10010 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 3.5e-20 104.4 140 47.9
CDE10G0302 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 3.5e-20 104.4 241 33.2
Lj4A239T53 Lonicera japonica HOM05D004086 ORTHO05D004641 1.1e-18 99.4 131 48.9
Haze_15116 Corylus avellana HOM05D004086 ORTHO05D004641 1.8e-16 92.0 237 35.4
CDE05G1436 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 4.0e-16 90.9 123 45.5
SHI06750 Sapria himalayana HOM05D004086 ORTHO05D004641 1.5e-15 89.0 116 43.1
Oeu053017.4 Olea europaea HOM05D004086 ORTHO05D004641 7.6e-15 86.7 371 25.3
HPP92_026150 Vanilla planifolia HOM05D004086 ORTHO05D004641 2.7e-12 78.2 112 41.1
SEGI_37045 Sequoiadendron giganteum HOM05D037714 ORTHO05D004641 7.9e-12 76.6 157 36.3
Zm00001eb176250 Zea mays HOM05D004086 ORTHO05D004641 7.9e-12 76.6 187 32.6
Cre10.g454650 Chlamydomonas reinhardtii HOM05D004086 ORTHO05D004641 5.1e-11 73.9 126 37.3
Oeu053007.1 Olea europaea HOM05D004086 ORTHO05D004641 6.7e-11 73.6 308 27.6
BolC2t11821H Brassica oleracea HOM05D004086 ORTHO05D004641 3.3e-10 71.2 141 39.0
SEGI_38277 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 7.4e-10 70.1 140 35.7
Cpa.g.sc353.1 Carica papaya HOM05D004086 ORTHO05D004641 1.6e-09 68.9 235 34.0
Os08g0268900 Oryza sativa ssp. japonica HOM05D004086 ORTHO05D004641 2.2e-09 68.6 124 37.1
Gohir.A11G236200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 2.8e-09 68.2 91 47.3
BcaB07g34160 Brassica carinata HOM05D004086 ORTHO05D004641 8.2e-09 66.6 111 38.7
SEGI_36884 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 8.2e-09 66.6 54 63.0
Sc17g0002700 Simmondsia chinensis HOM05D004086 ORTHO05D004641 8.2e-09 66.6 98 42.9
MCO01G289 Micromonas commoda HOM05D004086 ORTHO05D004641 6.9e-08 63.5 626 24.9
Ah.15g091620 Amaranthus hybridus HOM05D004086 ORTHO05D004641 1.5e-07 62.4 47 66.0
SEGI_29880 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 3.4e-07 61.2 89 43.8
Ca_29956_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 1.7e-06 58.9 103 35.0


User provided reference genes

Program Settings