Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G3524 Papaver somniferum HOM05D006958 ORTHO05D008814 7.0e-209 730.3 357 100.0
PSO541G2153 Papaver somniferum HOM05D006958 ORTHO05D008814 5.3e-148 528.1 349 78.8
PSO675G0096 Papaver somniferum HOM05D006958 ORTHO05D008814 2.4e-145 519.2 349 77.4
TAR376G0445 Trochodendron aralioides HOM05D006958 ORTHO05D008814 1.4e-100 370.5 348 56.3
Dinv39219 Davidia involucrata HOM05D006958 ORTHO05D008814 1.6e-96 357.1 330 57.3
MBI16_g23890_MAGBIO Magnolia biondii HOM05D006958 ORTHO05D008814 2.1e-96 356.7 345 55.4
CSS0020437 Camellia sinensis var. sinensis HOM05D006958 ORTHO05D008814 6.1e-96 355.1 340 55.0
CSS0026693 Camellia sinensis var. sinensis HOM05D006958 ORTHO05D008814 1.3e-93 347.4 341 55.1
Actinidia10201 Actinidia chinensis HOM05D006958 ORTHO05D008814 2.8e-93 346.3 306 57.8
Prupe.1G422600 Prunus persica HOM05D006958 ORTHO05D008814 7.0e-92 341.7 345 52.8
Actinidia22696 Actinidia chinensis HOM05D006958 ORTHO05D008814 4.5e-91 339.0 351 51.3
Haze_22433 Corylus avellana HOM05D006958 ORTHO05D008814 2.9e-90 336.3 339 51.6
THA.LOC104816754 Tarenaya hassleriana HOM05D006958 ORTHO05D008814 5.0e-90 335.5 320 54.7
Cfa013775 Carpinus fangiana HOM05D006958 ORTHO05D008814 8.5e-90 334.7 338 51.2
Thecc.08G088500 Theobroma cacao HOM05D006958 ORTHO05D008814 1.1e-89 334.3 336 54.2
Gorai.009G220300 Gossypium raimondii HOM05D006958 ORTHO05D008814 4.2e-89 332.4 337 53.4
Nitab4.5_0002484g0050 Nicotiana tabacum HOM05D006958 ORTHO05D008814 4.2e-89 332.4 342 51.5
Manes.18G046700 Manihot esculenta HOM05D006958 ORTHO05D008814 5.5e-89 332.0 346 51.4
Nitab4.5_0004654g0020 Nicotiana tabacum HOM05D006958 ORTHO05D008814 7.2e-89 331.6 301 56.1
COL.COLO4_28503 Corchorus olitorius HOM05D006958 ORTHO05D008814 9.5e-89 331.3 335 52.8
Thhalv10023590m.g Eutrema salsugineum HOM05D006958 ORTHO05D008814 1.2e-88 330.9 299 57.2
Atru.chr13.835 Acer truncatum HOM05D006958 ORTHO05D008814 1.6e-88 330.5 297 56.2
Duzib093G1923 Durio zibethinus HOM05D006958 ORTHO05D008814 2.8e-88 329.7 336 53.6
RcHm_v2.0_Chr6g0309651 Rosa chinensis HOM05D006958 ORTHO05D008814 2.8e-88 329.7 343 50.7
CiPaw.07G174600 Carya illinoinensis HOM05D006958 ORTHO05D008814 4.7e-88 328.9 306 54.9
MD15G1069100 Malus domestica HOM05D006958 ORTHO05D008814 4.7e-88 328.9 342 52.9
Rhsim06G0062400 Rhododendron simsii HOM05D006958 ORTHO05D008814 1.0e-87 327.8 306 54.9
ATR0739G011 Amborella trichopoda HOM05D006958 ORTHO05D008814 1.4e-87 327.4 352 50.9
Gohir.D05G213600 Gossypium hirsutum HOM05D006958 ORTHO05D008814 2.3e-87 326.6 337 52.8
FAN15G0662 Fragaria x ananassa HOM05D006958 ORTHO05D008814 3.0e-87 326.2 345 51.0
FAN24G2490 Fragaria x ananassa HOM05D006958 ORTHO05D008814 3.0e-87 326.2 345 50.7
CANSAT25G3409 Cannabis sativa HOM05D006958 ORTHO05D008814 4.0e-87 325.9 323 52.3
Ciclev10001733m.g Citrus clementina HOM05D006958 ORTHO05D008814 4.0e-87 325.9 297 56.6
FvH4_2g33060 Fragaria vesca HOM05D006958 ORTHO05D008814 4.0e-87 325.9 306 54.6
Solyc04g077820.4 Solanum lycopersicum HOM05D006958 ORTHO05D008814 5.2e-87 325.5 304 54.3
Sopen04g031420 Solanum pennellii HOM05D006958 ORTHO05D008814 5.2e-87 325.5 304 53.6
FAN27G0228 Fragaria x ananassa HOM05D006958 ORTHO05D008814 8.8e-87 324.7 310 54.5
C01p36350 Brassica napus HOM05D006958 ORTHO05D008814 2.6e-86 323.2 319 54.9
CARHR283790 Cardamine hirsuta HOM05D006958 ORTHO05D008814 3.4e-86 322.8 299 57.9
Sp2g04980 Schrenkiella parvula HOM05D006958 ORTHO05D008814 4.4e-86 322.4 299 56.9
AT1G59600 Arabidopsis thaliana HOM05D006958 ORTHO05D008814 9.8e-86 321.2 300 57.7
TWI12G1073 Tripterygium wilfordii HOM05D006958 ORTHO05D008814 1.7e-85 320.5 344 50.3
arahy.Tifrunner.gnm1.ann1.JFD9T8 Arachis hypogaea HOM05D006958 ORTHO05D008814 2.8e-85 319.7 349 48.7
FAN20G1263 Fragaria x ananassa HOM05D006958 ORTHO05D008814 4.9e-85 318.9 334 51.2
PGSC0003DMG400010608 Solanum tuberosum HOM05D006958 ORTHO05D008814 4.9e-85 318.9 355 49.3
QL12p038133 Quercus lobata HOM05D006958 ORTHO05D008814 6.3e-85 318.5 324 51.9
Carub.0002s0585 Capsella rubella HOM05D006958 ORTHO05D008814 1.1e-84 317.8 300 56.7
AL2G17470 Arabidopsis lyrata HOM05D006958 ORTHO05D008814 1.4e-84 317.4 300 57.3
A01p28700 Brassica napus HOM05D006958 ORTHO05D008814 1.4e-84 317.4 319 53.9
BolC1t03593H Brassica oleracea HOM05D006958 ORTHO05D008814 1.4e-84 317.4 319 54.9
Aqoxy6G02602 Aquilegia oxysepala HOM05D006958 ORTHO05D008814 1.8e-84 317.0 346 50.9
CAN.G724.27 Capsicum annuum HOM05D006958 ORTHO05D008814 3.1e-84 316.2 335 50.7
BraA01t03033Z Brassica rapa HOM05D006958 ORTHO05D008814 7.0e-84 315.1 319 53.6
Migut.N02783 Erythranthe guttata HOM05D006958 ORTHO05D008814 4.5e-83 312.4 342 47.7
Potri.002G118300 Populus trichocarpa HOM05D006958 ORTHO05D008814 7.8e-83 311.6 341 50.1
PGR031G1511 Punica granatum HOM05D006958 ORTHO05D008814 7.8e-83 311.6 311 51.1
Lj4A758G77 Lonicera japonica HOM05D006958 ORTHO05D008814 2.9e-82 309.7 389 46.5
ClCG08G016520 Citrullus lanatus HOM05D006958 ORTHO05D008814 5.0e-82 308.9 329 50.5
Cpa.g.sc142.28 Carica papaya HOM05D006958 ORTHO05D008814 1.1e-81 307.8 276 58.3
Sed0002112 Sechium edule HOM05D006958 ORTHO05D008814 3.3e-81 306.2 303 53.8
BcaB04g20216 Brassica carinata HOM05D006958 ORTHO05D008814 4.3e-81 305.8 321 51.7
HPP92_009523 Vanilla planifolia HOM05D006958 ORTHO05D008814 9.5e-81 304.7 346 48.3
Sc02g0007890 Simmondsia chinensis HOM05D006958 ORTHO05D008814 1.6e-80 303.9 307 51.1
Lalb_Chr14g0368181 Lupinus albus HOM05D006958 ORTHO05D008814 2.1e-80 303.5 343 48.4
HanXRQChr08g0229631 Helianthus annuus HOM05D006958 ORTHO05D008814 1.4e-79 300.8 326 51.2
Gohir.A05G210300 Gossypium hirsutum HOM05D006958 ORTHO05D008814 2.0e-78 297.0 277 56.7
MSTRG.24376 Avicennia marina HOM05D006958 ORTHO05D008814 2.6e-78 296.6 338 47.3
SGA_v2.0_scaffold28G11833 Striga asiatica HOM05D006958 ORTHO05D008814 2.6e-78 296.6 303 50.2
Hund05299 Selenicereus undatus HOM05D006958 ORTHO05D008814 7.5e-78 295.0 336 48.5
Lsat_1_v5_gn_6_110920 Lactuca sativa HOM05D006958 ORTHO05D008814 9.8e-78 294.7 312 50.0
CsaV3_2G026090 Cucumis sativus L. HOM05D006958 ORTHO05D008814 2.2e-77 293.5 303 52.5
Zm00001eb325900 Zea mays HOM05D006958 ORTHO05D008814 2.9e-77 293.1 330 47.0
TPR.G37796 Trifolium pratense HOM05D006958 ORTHO05D008814 4.9e-77 292.4 326 49.1
MELO3C010802.2 Cucumis melo HOM05D006958 ORTHO05D008814 1.1e-76 291.2 303 51.5
Aa31LG2G10550 Aethionema arabicum HOM05D006958 ORTHO05D008814 5.4e-76 288.9 279 53.8
Peaxi162Scf00081g02114 Petunia axillaris HOM05D006958 ORTHO05D008814 1.6e-75 287.3 302 50.7
arahy.Tifrunner.gnm1.ann1.8TQ0W2 Arachis hypogaea HOM05D006958 ORTHO05D008814 5.9e-75 285.4 346 46.0
Lj5g0000926 Lotus japonicus HOM05D006958 ORTHO05D008814 5.9e-75 285.4 349 44.4
Eucgr.F02250 Eucalyptus grandis HOM05D006958 ORTHO05D008814 1.7e-74 283.9 307 46.9
DCAR_020049 Daucus carota HOM05D006958 ORTHO05D008814 1.1e-73 281.2 297 49.2
Ca_13215_v3 Cicer arietinum L. HOM05D006958 ORTHO05D008814 1.9e-73 280.4 357 44.5
VMungo0647G0836 Vigna mungo HOM05D006958 ORTHO05D008814 5.6e-73 278.9 308 51.3
ECA246G2880 Erigeron canadensis HOM05D006958 ORTHO05D008814 1.6e-72 277.3 289 51.6
EL10Ac1g02379 Beta vulgaris HOM05D006958 ORTHO05D008814 3.6e-72 276.2 284 49.6
Glyma.14G089018 Glycine max HOM05D006958 ORTHO05D008814 2.2e-69 266.9 339 45.7
unitig_744.g24127 Utricularia gibba HOM05D006958 ORTHO05D008814 2.2e-69 266.9 297 48.1
Medtr1g018000 Medicago truncatula HOM05D006958 ORTHO05D008814 6.4e-69 265.4 351 45.3
Phvul.001G028000 Phaseolus vulgaris HOM05D006958 ORTHO05D008814 8.3e-69 265.0 296 50.0
CDE04G0359 Ceratophyllum demersum HOM05D006958 ORTHO05D008814 1.2e-54 218.0 220 51.8
GSVIVG01009341001 Vitis vinifera HOM05D006958 ORTHO05D008814 1.1e-52 211.5 211 51.7
Cc10_g05800 Coffea canephora HOM05D006958 ORTHO05D008814 2.3e-50 203.8 165 60.6
Pp3c12_1620 Physcomitrium patens HOM05D006958 ORTHO05D008814 3.4e-46 189.9 288 37.5
AUR62022479 Chenopodium quinoa HOM05D006958 ORTHO05D008814 7.8e-43 178.7 178 50.0
Oeu049903.1 Olea europaea HOM05D006958 ORTHO05D008814 3.4e-38 163.3 173 49.7
HPP92_009559 Vanilla planifolia HOM05D006958 ORTHO05D008814 5.8e-38 162.5 187 46.5
Os01g0593100 Oryza sativa ssp. japonica HOM05D006958 ORTHO05D008814 2.4e-36 157.1 204 43.6
Os07g0586000 Oryza sativa ssp. japonica HOM05D006958 ORTHO05D008814 1.5e-33 147.9 168 44.0
Psat6g018160 Pisum sativum HOM05D006958 ORTHO05D008814 1.5e-33 147.9 254 40.6
CBR_g51257 Chara braunii HOM05D006958 ORTHO05D008814 5.8e-30 136.0 332 31.0
SEGI_02529 Sequoiadendron giganteum HOM05D006958 ORTHO05D008814 2.9e-29 133.7 175 41.7
SMO334G0101 Selaginella moellendorffii HOM05D006958 ORTHO05D008814 9.3e-28 128.6 270 33.3
arahy.Tifrunner.gnm1.ann1.D1UQZZ Arachis hypogaea HOM05D006958 ORTHO05D008814 1.6e-24 117.9 266 30.8
BolC4t24190H Brassica oleracea HOM05D006958 ORTHO05D008814 5.3e-23 112.8 132 50.8
MBI15_g25904_MAGBIO Magnolia biondii HOM05D006958 ORTHO05D017181 6.9e-23 112.5 124 50.0
Cfa010280 Carpinus fangiana HOM05D006958 ORTHO05D008814 1.6e-19 101.3 92 54.3
C04p26140 Brassica napus HOM05D006958 ORTHO05D008814 5.1e-18 96.3 107 51.4
BcaC02g10644 Brassica carinata HOM05D006958 ORTHO05D008814 6.7e-18 95.9 145 42.8
AUR62022480 Chenopodium quinoa HOM05D006958 ORTHO05D008814 4.1e-15 86.7 111 43.2
SEGI_26692 Sequoiadendron giganteum HOM05D006958 ORTHO05D008814 2.5e-12 77.4 72 51.4
Psat7g107960 Pisum sativum HOM05D006958 ORTHO05D008814 6.1e-11 72.8 98 42.9
HPP92_009560 Vanilla planifolia HOM05D001084 ORTHO05D001275 9.7e-09 65.5 50 64.0
Ah.09g227430 Amaranthus hybridus HOM05D006958 ORTHO05D008814 4.5e-06 56.6 70 47.1


User provided reference genes

Program Settings