Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G3271 Papaver somniferum HOM05D002477 ORTHO05D001927 0.0e+00 1161.4 720 100.0
PSO675G6033 Papaver somniferum HOM05D002477 ORTHO05D001927 9.9e-279 963.4 720 88.5
TAR626G0091 Trochodendron aralioides HOM05D002477 ORTHO05D001927 9.3e-19 99.8 322 29.8
Potri.016G053300 Populus trichocarpa HOM05D002477 ORTHO05D001927 5.1e-17 94.0 224 29.0
GSVIVG01033321001 Vitis vinifera HOM05D002477 ORTHO05D001927 8.7e-17 93.2 79 49.4
Sabra16G0056600 Salix brachista HOM05D002477 ORTHO05D001927 2.5e-16 91.7 197 30.5
Hund24730 Selenicereus undatus HOM05D002477 ORTHO05D001927 4.3e-16 90.9 125 40.0
Manes.09G026400 Manihot esculenta HOM05D002477 ORTHO05D001927 1.6e-15 89.0 235 29.8
Duzib106G0995 Durio zibethinus HOM05D002477 ORTHO05D001927 3.7e-15 87.8 216 30.1
Sc25g0005240 Simmondsia chinensis HOM05D002477 ORTHO05D001927 4.8e-15 87.4 101 40.6
Sc19g0006700 Simmondsia chinensis HOM05D002477 ORTHO05D001927 5.3e-14 84.0 111 43.2
TAR629G1056 Trochodendron aralioides HOM05D002477 ORTHO05D001927 5.3e-14 84.0 77 44.2
AUR62024404 Chenopodium quinoa HOM05D002477 ORTHO05D001927 6.9e-14 83.6 96 44.8
Ciclev10004349m.g Citrus clementina HOM05D002477 ORTHO05D001927 9.0e-14 83.2 117 35.9
vmacro09089 Vaccinium macrocarpon HOM05D002477 ORTHO05D001927 1.5e-13 82.4 105 37.1
Haze_19906 Corylus avellana HOM05D002477 ORTHO05D001927 2.0e-13 82.0 193 29.5
Nn1g07679 Nelumbo nucifera HOM05D002477 ORTHO05D001927 2.6e-13 81.6 287 25.4
Actinidia38563 Actinidia chinensis HOM05D002477 ORTHO05D001927 4.5e-13 80.9 77 45.5
Rhsim04G0100400 Rhododendron simsii HOM05D002477 ORTHO05D001927 5.9e-13 80.5 130 32.3
Sopen10g030860 Solanum pennellii HOM05D002477 ORTHO05D001927 1.0e-12 79.7 76 44.7
CiPaw.10G129800 Carya illinoinensis HOM05D002477 ORTHO05D001927 1.3e-12 79.3 118 35.6
AUR62025998 Chenopodium quinoa HOM05D002477 ORTHO05D001927 1.7e-12 79.0 88 43.2
Actinidia17246 Actinidia chinensis HOM05D002477 ORTHO05D001927 2.2e-12 78.6 91 44.0
Cfa016857 Carpinus fangiana HOM05D002477 ORTHO05D001927 2.2e-12 78.6 112 33.9
Manes.18G010900 Manihot esculenta HOM05D002477 ORTHO05D001927 2.9e-12 78.2 200 26.0
PGSC0003DMG400023718 Solanum tuberosum HOM05D002477 ORTHO05D001927 2.9e-12 78.2 76 44.7
EL10Ac3g07024 Beta vulgaris HOM05D002477 ORTHO05D001927 5.0e-12 77.4 169 33.1
CAN.G77.2 Capsicum annuum HOM05D002477 ORTHO05D001927 5.0e-12 77.4 76 44.7
Gorai.006G138200 Gossypium raimondii HOM05D002477 ORTHO05D001927 5.0e-12 77.4 111 34.2
CiPaw.09G035000 Carya illinoinensis HOM05D002477 ORTHO05D001927 6.5e-12 77.0 75 44.0
SHI33652 Sapria himalayana HOM05D002477 ORTHO05D001927 6.5e-12 77.0 79 43.0
MBI12_g00013_MAGBIO Magnolia biondii HOM05D002477 ORTHO05D001927 8.5e-12 76.6 87 40.2
Migut.M00522 Erythranthe guttata HOM05D002477 ORTHO05D001927 1.1e-11 76.3 106 36.8
Eucgr.C04382 Eucalyptus grandis HOM05D002477 ORTHO05D001927 1.1e-11 76.3 76 38.2
QL08p056700 Quercus lobata HOM05D002477 ORTHO05D001927 1.1e-11 76.3 79 41.8
CSS0020089 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 1.4e-11 75.9 77 41.6
CSS0026110 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 1.4e-11 75.9 77 41.6
Cfa016856 Carpinus fangiana HOM05D002477 ORTHO05D001927 1.4e-11 75.9 160 30.0
Haze_12569 Corylus avellana HOM05D002477 ORTHO05D001927 1.4e-11 75.9 329 25.8
Gohir.A09G123900 Gossypium hirsutum HOM05D002477 ORTHO05D001927 1.4e-11 75.9 111 33.3
Gohir.D09G120700 Gossypium hirsutum HOM05D002477 ORTHO05D001927 1.4e-11 75.9 111 33.3
vmacro09464 Vaccinium macrocarpon HOM05D002477 ORTHO05D001927 1.9e-11 75.5 108 37.0
Ah.04g151880 Amaranthus hybridus HOM05D002477 ORTHO05D001927 2.5e-11 75.1 97 39.2
Oeu033163.1 Olea europaea HOM05D002477 ORTHO05D001927 4.2e-11 74.3 120 32.5
Peaxi162Scf00650g00229 Petunia axillaris HOM05D002477 ORTHO05D001927 4.2e-11 74.3 77 41.6
Thecc.05G161200 Theobroma cacao HOM05D002477 ORTHO05D001927 4.2e-11 74.3 221 29.9
Cc06_g16670 Coffea canephora HOM05D002477 ORTHO05D001927 5.5e-11 73.9 275 25.8
Nitab4.5_0004532g0010 Nicotiana tabacum HOM05D002477 ORTHO05D001927 5.5e-11 73.9 124 34.7
Duzib133G1113 Durio zibethinus HOM05D002477 ORTHO05D001927 7.2e-11 73.6 127 34.6
Nitab4.5_0005201g0030 Nicotiana tabacum HOM05D002477 ORTHO05D001927 7.2e-11 73.6 129 33.3
SGA_v2.0_scaffold70G23601 Striga asiatica HOM05D002477 ORTHO05D001927 9.4e-11 73.2 77 39.0
CSS0018822 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 1.2e-10 72.8 216 30.1
DCAR_009054 Daucus carota HOM05D002477 ORTHO05D001927 1.2e-10 72.8 98 38.8
Nitab4.5_0002220g0010 Nicotiana tabacum HOM05D002477 ORTHO05D001927 1.2e-10 72.8 126 33.3
Dinv21332 Davidia involucrata HOM05D002477 ORTHO05D001927 1.6e-10 72.4 269 27.5
Duzib093G0277 Durio zibethinus HOM05D002477 ORTHO05D001927 1.6e-10 72.4 131 30.5
Phvul.006G012311 Phaseolus vulgaris HOM05D002477 ORTHO05D001927 1.6e-10 72.4 109 33.0
Solyc03g063720.4 Solanum lycopersicum HOM05D002477 ORTHO05D001927 1.6e-10 72.4 112 33.0
Sopen03g016980 Solanum pennellii HOM05D002477 ORTHO05D001927 1.6e-10 72.4 161 31.1
TWI36G1687 Tripterygium wilfordii HOM05D002477 ORTHO05D001927 1.6e-10 72.4 129 33.3
CSS0044202 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 2.1e-10 72.0 216 30.6
PGSC0003DMG400011962 Solanum tuberosum HOM05D002477 ORTHO05D001927 2.1e-10 72.0 74 44.6
CSS0027860 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 2.7e-10 71.6 120 33.3
CSS0049780 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 2.7e-10 71.6 120 33.3
QL07p021424 Quercus lobata HOM05D002477 ORTHO05D001927 2.7e-10 71.6 79 38.0
Oeu052600.1 Olea europaea HOM05D002477 ORTHO05D001927 3.6e-10 71.2 85 38.8
Thecc.01G201900 Theobroma cacao HOM05D002477 ORTHO05D001927 3.6e-10 71.2 192 28.1
CAN.G128.17 Capsicum annuum HOM05D002477 ORTHO05D001927 4.6e-10 70.9 127 33.9
DCAR_020474 Daucus carota HOM05D002477 ORTHO05D001927 4.6e-10 70.9 195 28.2
TPR.G10410 Trifolium pratense HOM05D002477 ORTHO05D001927 4.6e-10 70.9 86 39.5
Duzib211G0533 Durio zibethinus HOM05D002477 ORTHO05D001927 6.1e-10 70.5 120 32.5
ECA236G0694 Erigeron canadensis HOM05D002477 ORTHO05D001927 6.1e-10 70.5 106 34.0
Lsat_1_v5_gn_9_103221 Lactuca sativa HOM05D002477 ORTHO05D001927 6.1e-10 70.5 88 34.1
Ah.04g151870 Amaranthus hybridus HOM05D002477 ORTHO05D001927 7.9e-10 70.1 121 35.5
CDE12G0621 Ceratophyllum demersum HOM05D002477 ORTHO05D001927 7.9e-10 70.1 89 41.6
CANSAT80G2456 Cannabis sativa HOM05D002477 ORTHO05D001927 1.0e-09 69.7 207 27.5
CsaV3_7G002300 Cucumis sativus L. HOM05D002477 ORTHO05D001927 1.4e-09 69.3 89 34.8
ECA247G2430 Erigeron canadensis HOM05D002477 ORTHO05D001927 1.4e-09 69.3 90 33.3
PGSC0003DMG400018039 Solanum tuberosum HOM05D002477 ORTHO05D001927 1.4e-09 69.3 76 43.4
MELO3C024174.2 Cucumis melo HOM05D002477 ORTHO05D001927 1.8e-09 68.9 89 34.8
Eucgr.K01371 Eucalyptus grandis HOM05D002477 ORTHO05D001927 1.8e-09 68.9 69 39.1
CDE02G2179 Ceratophyllum demersum HOM05D002477 ORTHO05D001927 2.3e-09 68.6 222 27.5
Lj6g0015125 Lotus japonicus HOM05D002477 ORTHO05D001927 2.3e-09 68.6 70 40.0
Nitab4.5_0005559g0030 Nicotiana tabacum HOM05D002477 ORTHO05D001927 2.3e-09 68.6 131 32.8
MSTRG.15028 Avicennia marina HOM05D002477 ORTHO05D001927 3.0e-09 68.2 73 38.4
HanXRQChr05g0132191 Helianthus annuus HOM05D002477 ORTHO05D001927 3.0e-09 68.2 129 29.5
Os11g0482500 Oryza sativa ssp. japonica HOM05D012665 ORTHO05D015176 3.0e-09 68.2 72 43.1
Gohir.A11G146700 Gossypium hirsutum HOM05D002477 ORTHO05D001927 3.9e-09 67.8 59 44.1
Gohir.D11G153400 Gossypium hirsutum HOM05D002477 ORTHO05D001927 3.9e-09 67.8 59 44.1
Lsat_1_v5_gn_8_80200 Lactuca sativa HOM05D000424 ORTHO05D000355 5.1e-09 67.4 69 37.7
Gorai.007G163500 Gossypium raimondii HOM05D002477 ORTHO05D001927 6.7e-09 67.0 59 42.4
CANSAT64G2375 Cannabis sativa HOM05D002477 ORTHO05D001927 1.1e-08 66.2 121 34.7
TWI77G0015 Tripterygium wilfordii HOM05D002477 ORTHO05D001927 1.5e-08 65.9 67 38.8
GSVIVG01030142001 Vitis vinifera HOM05D002477 ORTHO05D001927 1.5e-08 65.9 71 38.0
CARHR060680 Cardamine hirsuta HOM05D002477 ORTHO05D001927 2.0e-08 65.5 88 38.6
AL2G26890 Arabidopsis lyrata HOM05D002477 ORTHO05D001927 2.5e-08 65.1 75 42.7
Sed0002535 Sechium edule HOM05D002477 ORTHO05D001927 2.5e-08 65.1 219 22.8
MSTRG.6732 Avicennia marina HOM05D002477 ORTHO05D001927 3.3e-08 64.7 123 30.1
Lsat_1_v5_gn_9_27420 Lactuca sativa HOM05D002477 ORTHO05D001927 3.3e-08 64.7 91 34.1
Cpa.g.sc92.17 Carica papaya HOM05D002477 ORTHO05D001927 4.3e-08 64.3 71 38.0
Cfa016855 Carpinus fangiana HOM05D002477 ORTHO05D001927 4.3e-08 64.3 68 38.2
RcHm_v2.0_Chr2g0155231 Rosa chinensis HOM05D002477 ORTHO05D001927 4.3e-08 64.3 90 33.3
Medtr3g082160 Medicago truncatula HOM05D002477 ORTHO05D001927 5.7e-08 63.9 95 37.9
Nn3g19128 Nelumbo nucifera HOM05D002477 ORTHO05D001927 5.7e-08 63.9 106 31.1
Psat6g126680 Pisum sativum HOM05D002477 ORTHO05D001927 5.7e-08 63.9 74 36.5
Peaxi162Scf00398g00011 Petunia axillaris HOM05D002477 ORTHO05D001927 7.4e-08 63.5 251 23.9
Zm00001eb210520 Zea mays HOM05D012665 ORTHO05D015176 7.4e-08 63.5 63 41.3
Ca_26695_v3 Cicer arietinum L. HOM05D002477 ORTHO05D001927 9.7e-08 63.2 145 29.0
Phvul.007G255000 Phaseolus vulgaris HOM05D002477 ORTHO05D001927 9.7e-08 63.2 78 34.6
PGR142G3066 Punica granatum HOM05D002477 ORTHO05D001927 9.7e-08 63.2 81 29.6
Glyma.15G236400 Glycine max HOM05D002477 ORTHO05D001927 1.7e-07 62.4 92 35.9
Thhalv10019541m.g Eutrema salsugineum HOM05D002477 ORTHO05D001927 2.2e-07 62.0 101 33.7
FvH4_6g40210 Fragaria vesca HOM05D002477 ORTHO05D001927 2.2e-07 62.0 113 29.2
Lalb_Chr04g0259381 Lupinus albus HOM05D002477 ORTHO05D001927 2.2e-07 62.0 72 34.7
Psat5g110680 Pisum sativum HOM05D002477 ORTHO05D001927 2.2e-07 62.0 84 36.9
BcaB03g15137 Brassica carinata HOM05D002477 ORTHO05D001927 2.8e-07 61.6 68 44.1
Thhalv10003829m.g Eutrema salsugineum HOM05D021191 ORTHO05D001927 2.8e-07 61.6 143 28.7
PGR044G1376 Punica granatum HOM05D002477 ORTHO05D001927 2.8e-07 61.6 67 37.3
RcHm_v2.0_Chr3g0447711 Rosa chinensis HOM05D002477 ORTHO05D001927 2.8e-07 61.6 71 36.6
Sed0017433 Sechium edule HOM05D002477 ORTHO05D001927 2.8e-07 61.6 75 36.0
Carub.0002s1451 Capsella rubella HOM05D002477 ORTHO05D001927 3.7e-07 61.2 75 40.0
ClCG02G003110 Citrullus lanatus HOM05D002477 ORTHO05D001927 3.7e-07 61.2 245 22.9
Nitab4.5_0007468g0010 Nicotiana tabacum HOM05D002477 ORTHO05D001927 3.7e-07 61.2 119 31.1
PGR042G2775 Punica granatum HOM05D002477 ORTHO05D001927 4.8e-07 60.8 66 37.9
Solyc07g056120.3 Solanum lycopersicum HOM05D002477 ORTHO05D001927 4.8e-07 60.8 64 40.6
TPR.G23127 Trifolium pratense HOM05D002477 ORTHO05D001927 4.8e-07 60.8 88 35.2
AT1G68030 Arabidopsis thaliana HOM05D002477 ORTHO05D001927 8.2e-07 60.1 75 40.0
Sc21g0000360 Simmondsia chinensis HOM05D002477 ORTHO05D001927 8.2e-07 60.1 165 27.3
Zm00001eb210290 Zea mays HOM05D012665 ORTHO05D015176 8.2e-07 60.1 100 32.0
ATR0757G170 Amborella trichopoda HOM05D002477 ORTHO05D001927 1.1e-06 59.7 86 33.7
arahy.Tifrunner.gnm1.ann1.62FNLU Arachis hypogaea HOM05D002477 ORTHO05D001927 1.1e-06 59.7 89 31.5
arahy.Tifrunner.gnm1.ann1.K0YCIR Arachis hypogaea HOM05D002477 ORTHO05D001927 1.1e-06 59.7 89 31.5
A07p34530 Brassica napus HOM05D002477 ORTHO05D001927 1.1e-06 59.7 96 35.4
Glyma.13G197800 Glycine max HOM05D002477 ORTHO05D001927 1.1e-06 59.7 71 39.4
Nitab4.5_0001022g0060 Nicotiana tabacum HOM05D002477 ORTHO05D001927 1.1e-06 59.7 119 30.3
arahy.Tifrunner.gnm1.ann1.NH26IS Arachis hypogaea HOM05D002477 ORTHO05D001927 1.4e-06 59.3 71 35.2
arahy.Tifrunner.gnm1.ann1.PI38UG Arachis hypogaea HOM05D002477 ORTHO05D001927 1.4e-06 59.3 71 35.2
BcaB02g06607 Brassica carinata HOM05D002477 ORTHO05D001927 1.4e-06 59.3 99 28.3
BcaC08g46229 Brassica carinata HOM05D002477 ORTHO05D001927 1.4e-06 59.3 68 42.6
C06p41990 Brassica napus HOM05D002477 ORTHO05D001927 1.4e-06 59.3 68 42.6
BolC6t39229H Brassica oleracea HOM05D002477 ORTHO05D001927 1.4e-06 59.3 68 42.6
Ca_16324_v3 Cicer arietinum L. HOM05D002477 ORTHO05D001927 1.4e-06 59.3 125 31.2
HanXRQChr11g0329911 Helianthus annuus HOM05D002477 ORTHO05D001927 1.4e-06 59.3 267 24.0
TWI74G0633 Tripterygium wilfordii HOM05D002477 ORTHO05D001927 1.4e-06 59.3 66 36.4
CsaV3_3G039260 Cucumis sativus L. HOM05D002477 ORTHO05D001927 1.8e-06 58.9 76 34.2
Os11g0160700 Oryza sativa ssp. japonica HOM05D012665 ORTHO05D015176 1.8e-06 58.9 72 37.5
Peaxi162Scf00111g00528 Petunia axillaris HOM05D002477 ORTHO05D001927 1.8e-06 58.9 70 37.1
Zm00001eb228680 Zea mays HOM05D012665 ORTHO05D015176 1.8e-06 58.9 131 30.5
BraA06t24261Z Brassica rapa HOM05D010589 ORTHO05D001927 2.4e-06 58.5 74 36.5
Carub.0007s3029 Capsella rubella HOM05D021191 ORTHO05D001927 2.4e-06 58.5 123 33.3
MD06G1218200 Malus domestica HOM05D002477 ORTHO05D001927 2.4e-06 58.5 113 29.2
Hund08100 Selenicereus undatus HOM05D002477 ORTHO05D001927 2.4e-06 58.5 90 32.2
THA.LOC104815384 Tarenaya hassleriana HOM05D002477 ORTHO05D001927 2.4e-06 58.5 72 36.1
THA.LOC104825577 Tarenaya hassleriana HOM05D002477 ORTHO05D001927 2.4e-06 58.5 67 40.3
arahy.Tifrunner.gnm1.ann1.C30FA8 Arachis hypogaea HOM05D002477 ORTHO05D001927 3.1e-06 58.2 72 36.1
A08p37490 Brassica napus HOM05D004536 ORTHO05D005628 3.1e-06 58.2 123 31.7
MELO3C009670.2 Cucumis melo HOM05D002477 ORTHO05D001927 3.1e-06 58.2 106 31.1
SalBow7G2975 Salvia bowleyana HOM05D002477 ORTHO05D001927 3.1e-06 58.2 69 31.9
Gohir.D07G093300 Gossypium hirsutum HOM05D002477 ORTHO05D001927 4.1e-06 57.8 313 21.7
THA.LOC104808828 Tarenaya hassleriana HOM05D002477 ORTHO05D001927 4.1e-06 57.8 77 39.0
unitig_744.g24381 Utricularia gibba HOM05D002477 ORTHO05D001927 4.1e-06 57.8 86 30.2
Prupe.5G223300 Prunus persica HOM05D002477 ORTHO05D001927 5.3e-06 57.4 75 34.7
QL02p026723 Quercus lobata HOM05D002477 ORTHO05D001927 5.3e-06 57.4 108 31.5
QL93p2012_0041 Quercus lobata HOM05D002477 ORTHO05D001927 5.3e-06 57.4 108 32.4
ClCG10G017130 Citrullus lanatus HOM05D002477 ORTHO05D001927 6.9e-06 57.0 74 32.4
Lalb_Chr20g0110841 Lupinus albus HOM05D002477 ORTHO05D001927 6.9e-06 57.0 188 26.1
SGA_v2.0_scaffold135G34972 Striga asiatica HOM05D002477 ORTHO05D001927 9.1e-06 56.6 145 25.5
TWI38G0076 Tripterygium wilfordii HOM05D002477 ORTHO05D001927 9.1e-06 56.6 133 29.3


User provided reference genes

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