Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G3228 Papaver somniferum HOM05D005125 ORTHO05D006777 3.8e-274 947.6 488 100.0
PSO675G8084 Papaver somniferum HOM05D005125 ORTHO05D006777 1.3e-242 842.8 427 98.1
TAR625G0173 Trochodendron aralioides HOM05D005125 ORTHO05D006777 5.8e-182 641.3 427 74.5
GSVIVG01013360001 Vitis vinifera HOM05D005125 ORTHO05D006777 5.1e-178 628.2 423 74.0
MD15G1002000 Malus domestica HOM05D005125 ORTHO05D006777 3.3e-177 625.5 426 73.7
Aqoxy6G01728 Aquilegia oxysepala HOM05D005125 ORTHO05D006777 9.6e-177 624.0 414 73.7
Prupe.1G354500 Prunus persica HOM05D005125 ORTHO05D006777 1.6e-176 623.2 424 72.2
CSS0022218 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 3.1e-175 619.0 413 73.8
CiPaw.07G138900 Carya illinoinensis HOM05D005125 ORTHO05D006777 5.3e-175 618.2 411 74.9
Dinv31939 Davidia involucrata HOM05D005125 ORTHO05D006777 4.5e-174 615.1 442 71.5
QL02p014036 Quercus lobata HOM05D005125 ORTHO05D006777 3.8e-173 612.1 424 72.2
Hma1.2p1_0507F.1_g168460 Hydrangea macrophylla HOM05D005125 ORTHO05D006777 6.5e-173 611.3 420 72.9
MD08G1002400 Malus domestica HOM05D005125 ORTHO05D006777 6.5e-173 611.3 427 72.1
Cfa014076 Carpinus fangiana HOM05D005125 ORTHO05D006777 8.4e-173 610.9 420 73.3
Ciclev10003241m.g Citrus clementina HOM05D005125 ORTHO05D006777 1.9e-172 609.8 414 72.9
Potri.002G010800 Populus trichocarpa HOM05D005125 ORTHO05D006777 7.2e-172 607.8 417 72.4
Actinidia37922 Actinidia chinensis HOM05D005125 ORTHO05D006777 2.7e-171 605.9 408 72.8
Manes.05G134400 Manihot esculenta HOM05D005125 ORTHO05D006777 2.7e-171 605.9 413 72.9
Potri.005G250300 Populus trichocarpa HOM05D005125 ORTHO05D006777 2.7e-171 605.9 416 73.1
Cpa.g.sc26.198 Carica papaya HOM05D005125 ORTHO05D006777 3.5e-171 605.5 436 70.0
CiPaw.08G073000 Carya illinoinensis HOM05D005125 ORTHO05D006777 7.9e-171 604.4 412 73.5
TWI56G0714 Tripterygium wilfordii HOM05D005125 ORTHO05D006777 1.8e-170 603.2 413 73.1
Manes.18G005400 Manihot esculenta HOM05D005125 ORTHO05D006777 2.3e-170 602.8 398 74.6
Sabra05G0193900 Salix brachista HOM05D005125 ORTHO05D006777 3.9e-170 602.1 419 71.6
Lj4A11T69 Lonicera japonica HOM05D005125 ORTHO05D006777 1.9e-169 599.7 396 73.2
Duzib093G0577 Durio zibethinus HOM05D005125 ORTHO05D006777 2.5e-169 599.4 413 72.4
ClCG08G009440 Citrullus lanatus HOM05D005125 ORTHO05D006777 5.7e-169 598.2 395 74.9
Thecc.08G058900 Theobroma cacao HOM05D005125 ORTHO05D006777 2.2e-168 596.3 416 71.9
RcHm_v2.0_Chr6g0304271 Rosa chinensis HOM05D005125 ORTHO05D006777 3.7e-168 595.5 417 72.7
Rhsim06G0007400 Rhododendron simsii HOM05D005125 ORTHO05D006777 4.8e-168 595.1 419 69.5
Solyc04g082340.3 Solanum lycopersicum HOM05D005125 ORTHO05D006777 6.3e-168 594.7 417 71.9
Glyma.06G018200 Glycine max HOM05D005125 ORTHO05D006777 1.1e-167 594.0 430 70.7
Sopen04g035960 Solanum pennellii HOM05D005125 ORTHO05D006777 1.1e-167 594.0 412 72.3
Gohir.A01G105600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 1.4e-167 593.6 410 71.2
Gorai.002G117000 Gossypium raimondii HOM05D005125 ORTHO05D006777 1.4e-167 593.6 410 71.7
PGR083G1107 Punica granatum HOM05D005125 ORTHO05D006777 1.8e-167 593.2 402 72.4
FAN27G2626 Fragaria x ananassa HOM05D005125 ORTHO05D006777 4.1e-167 592.0 418 71.5
Gohir.D01G091900 Gossypium hirsutum HOM05D005125 ORTHO05D006777 4.1e-167 592.0 410 71.5
Duzib116G0840 Durio zibethinus HOM05D005125 ORTHO05D006777 6.9e-167 591.3 413 71.7
FvH4_2g37450 Fragaria vesca HOM05D005125 ORTHO05D006777 6.9e-167 591.3 418 71.5
Glyma.04G017900 Glycine max HOM05D005125 ORTHO05D006777 1.2e-166 590.5 430 70.7
CANSAT25G1708 Cannabis sativa HOM05D005125 ORTHO05D006777 2.6e-166 589.3 419 70.4
Cc10_g00670 Coffea canephora HOM05D005125 ORTHO05D006777 1.7e-165 586.6 418 69.9
Atru.chr13.135 Acer truncatum HOM05D005125 ORTHO05D006777 2.2e-165 586.3 406 71.2
Lalb_Chr11g0061631 Lupinus albus HOM05D005125 ORTHO05D006777 3.8e-165 585.5 427 70.0
THA.LOC104813172 Tarenaya hassleriana HOM05D005125 ORTHO05D006777 5.0e-165 585.1 418 70.1
Ca_15433_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 6.5e-165 584.7 414 70.5
Haze_22773 Corylus avellana HOM05D005125 ORTHO05D006777 1.1e-164 583.9 382 75.1
FAN20G1306 Fragaria x ananassa HOM05D005125 ORTHO05D006777 1.4e-164 583.6 418 70.8
Phvul.009G010800 Phaseolus vulgaris HOM05D005125 ORTHO05D006777 2.5e-164 582.8 421 69.8
PGSC0003DMG400009979 Solanum tuberosum HOM05D005125 ORTHO05D006777 2.1e-163 579.7 397 72.3
Lj1g0005535 Lotus japonicus HOM05D005125 ORTHO05D006777 3.6e-163 578.9 418 69.9
Eucgr.L00923 Eucalyptus grandis HOM05D005125 ORTHO05D006777 4.6e-163 578.6 410 71.0
Lalb_Chr23g0265791 Lupinus albus HOM05D005125 ORTHO05D006777 4.6e-163 578.6 422 69.9
FAN15G0126 Fragaria x ananassa HOM05D005125 ORTHO05D006777 7.9e-163 577.8 432 69.0
CsaV3_6G031580 Cucumis sativus L. HOM05D005125 ORTHO05D006777 1.0e-162 577.4 395 72.9
Medtr3g115290 Medicago truncatula HOM05D005125 ORTHO05D006777 1.4e-162 577.0 429 67.4
TPR.G38202 Trifolium pratense HOM05D005125 ORTHO05D006777 2.5e-161 572.8 421 66.7
BcaC04g22006 Brassica carinata HOM05D005125 ORTHO05D006777 5.7e-161 571.6 412 69.9
C09p24930 Brassica napus HOM05D005125 ORTHO05D006777 5.7e-161 571.6 412 69.9
BcaB07g31085 Brassica carinata HOM05D005125 ORTHO05D006777 9.7e-161 570.9 411 69.8
A09p19570 Brassica napus HOM05D005125 ORTHO05D006777 9.7e-161 570.9 412 69.7
Nn5g30942 Nelumbo nucifera HOM05D005125 ORTHO05D006777 9.7e-161 570.9 371 74.7
Nitab4.5_0000588g0110 Nicotiana tabacum HOM05D005125 ORTHO05D006777 9.7e-161 570.9 432 68.8
Peaxi162Scf00893g00037 Petunia axillaris HOM05D005125 ORTHO05D006777 9.7e-161 570.9 411 70.1
Aa31LG9G12440 Aethionema arabicum HOM05D005125 ORTHO05D006777 1.3e-160 570.5 427 67.2
AL8G19280 Arabidopsis lyrata HOM05D005125 ORTHO05D006777 1.3e-160 570.5 409 69.7
BraA09t37570Z Brassica rapa HOM05D005125 ORTHO05D006777 1.7e-160 570.1 412 69.7
AT5G42320 Arabidopsis thaliana HOM05D005125 ORTHO05D006777 3.7e-160 568.9 419 68.7
Lsat_1_v5_gn_2_5181 Lactuca sativa HOM05D005125 ORTHO05D006777 4.8e-160 568.5 386 70.5
CARHR284930 Cardamine hirsuta HOM05D005125 ORTHO05D006777 8.2e-160 567.8 417 68.1
HanXRQChr06g0183991 Helianthus annuus HOM05D005125 ORTHO05D006777 1.4e-159 567.0 386 69.4
Rhsim07G0254900 Rhododendron simsii HOM05D005125 ORTHO05D006777 1.4e-159 567.0 381 72.4
Sp7g08250 Schrenkiella parvula HOM05D005125 ORTHO05D006777 5.3e-159 565.1 415 68.4
vmacro21811 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 5.3e-159 565.1 440 65.5
EL10Ac1g01960 Beta vulgaris HOM05D005125 ORTHO05D006777 6.9e-159 564.7 422 67.5
Migut.C00961 Erythranthe guttata HOM05D005125 ORTHO05D006777 6.9e-159 564.7 431 66.4
Sed0024407 Sechium edule HOM05D005125 ORTHO05D006777 1.2e-158 563.9 382 73.6
Carub.0008s0686 Capsella rubella HOM05D005125 ORTHO05D006777 2.6e-158 562.8 402 69.2
arahy.Tifrunner.gnm1.ann1.1X7ZBM Arachis hypogaea HOM05D005125 ORTHO05D006777 1.0e-157 560.8 406 71.2
arahy.Tifrunner.gnm1.ann1.VXG7Z6 Arachis hypogaea HOM05D005125 ORTHO05D006777 1.0e-157 560.8 406 71.2
MD12G1003300 Malus domestica HOM05D005125 ORTHO05D006777 1.3e-157 560.5 474 63.3
CAN.G311.115 Capsicum annuum HOM05D005125 ORTHO05D006777 1.7e-157 560.1 383 72.3
Actinidia28601 Actinidia chinensis HOM05D005125 ORTHO05D006777 3.8e-157 558.9 408 67.9
SalBow7G1095 Salvia bowleyana HOM05D005125 ORTHO05D006777 1.9e-156 556.6 447 63.1
ECA238G0848 Erigeron canadensis HOM05D005125 ORTHO05D006777 6.7e-154 548.1 375 69.9
Lsat_1_v5_gn_8_26201 Lactuca sativa HOM05D005125 ORTHO05D006777 1.5e-153 547.0 392 67.3
Ah.00g000800 Amaranthus hybridus HOM05D005125 ORTHO05D006777 2.0e-153 546.6 434 65.7
vmacro04403 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 1.1e-151 540.8 410 66.6
EL10Ac7g16836 Beta vulgaris HOM05D005125 ORTHO05D006777 4.1e-151 538.9 420 66.2
Duzib041G0467 Durio zibethinus HOM05D005125 ORTHO05D006777 1.2e-150 537.3 428 64.7
MBI08_g41521_MAGBIO Magnolia biondii HOM05D005125 ORTHO05D006777 1.2e-150 537.3 407 67.3
SGA_v2.0_scaffold108G30863 Striga asiatica HOM05D005125 ORTHO05D006777 5.9e-150 535.0 459 61.0
AUR62036871 Chenopodium quinoa HOM05D005125 ORTHO05D006777 1.1e-148 530.8 381 67.7
Hund05112 Selenicereus undatus HOM05D005125 ORTHO05D006777 8.8e-146 521.2 369 69.4
HPP92_007117 Vanilla planifolia HOM05D005125 ORTHO05D006777 1.3e-144 517.3 406 65.3
VMungo1309G1587 Vigna mungo HOM05D005125 ORTHO05D006777 2.7e-142 509.6 378 67.7
ATR0661G305 Amborella trichopoda HOM05D005125 ORTHO05D006777 7.7e-142 508.1 416 60.8
Zm00001eb209310 Zea mays HOM05D005125 ORTHO05D006777 1.7e-141 506.9 417 62.6
unitig_747.g21516 Utricularia gibba HOM05D005125 ORTHO05D006777 9.4e-140 501.1 419 61.6
Ca_15458_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 1.6e-139 500.4 337 70.9
Os02g0119300 Oryza sativa ssp. japonica HOM05D005125 ORTHO05D006777 2.7e-139 499.6 397 61.7
Thhalv10027780m.g Eutrema salsugineum HOM05D005125 ORTHO05D006777 1.2e-137 494.2 325 73.2
Eucgr.E03516 Eucalyptus grandis HOM05D005125 ORTHO05D006777 2.8e-136 489.6 414 63.5
CSS0019336 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 4.5e-134 482.3 293 77.8
DCAR_016769 Daucus carota HOM05D005125 ORTHO05D006777 5.9e-134 481.9 382 63.6
CDE05G1644 Ceratophyllum demersum HOM05D005125 ORTHO05D006777 5.0e-133 478.8 379 61.2
MELO3C026539.2 Cucumis melo HOM05D005125 ORTHO05D006777 3.2e-132 476.1 303 74.9
Sc15g0004430 Simmondsia chinensis HOM05D005125 ORTHO05D006777 1.6e-126 457.2 302 73.2
Gorai.009G188100 Gossypium raimondii HOM05D005125 ORTHO05D006777 1.5e-124 450.7 338 63.9
Gohir.D05G182800 Gossypium hirsutum HOM05D005125 ORTHO05D006777 3.6e-123 446.0 338 63.0
SHI07997 Sapria himalayana HOM05D005125 ORTHO05D006777 2.3e-122 443.4 439 54.4
Gohir.A05G179600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 2.0e-121 440.3 338 63.0
COL.COLO4_06662 Corchorus olitorius HOM05D005125 ORTHO05D006777 6.2e-115 418.7 270 75.2
Dinv05534 Davidia involucrata HOM05D005125 ORTHO05D006777 1.1e-108 397.9 269 73.2
Psat5g159120 Pisum sativum HOM05D005125 ORTHO05D006777 4.3e-100 369.4 282 65.6
Mapoly0045s0063 Marchantia polymorpha HOM05D005125 ORTHO05D006777 3.6e-99 366.3 303 56.8
AagrBONN_evm.TU.Sc2ySwM_362.2863 Anthoceros agrestis HOM05D005125 ORTHO05D006777 1.4e-98 364.4 313 56.5
Pp3c20_16570 Physcomitrium patens HOM05D005125 ORTHO05D006777 3.3e-92 343.2 401 45.1
SMO358G0159 Selaginella moellendorffii HOM05D005125 ORTHO05D006777 9.6e-92 341.7 277 60.3
ECA238G3411 Erigeron canadensis HOM05D005125 ORTHO05D006777 7.8e-86 322.0 199 73.9
Cre11.g467631 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D006777 2.4e-74 283.9 305 48.2
BcaNung05255 Brassica carinata HOM05D005125 ORTHO05D006777 3.4e-73 280.0 226 65.0
PRCOL_00006814 Prasinoderma coloniale HOM05D005125 ORTHO05D006777 4.3e-68 263.1 231 54.1
SGA_v2.0_scaffold195G40773 Striga asiatica HOM05D005125 ORTHO05D006777 1.3e-67 261.5 196 63.3
SEGI_03459 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 5.8e-65 252.7 232 54.7
MD00G1076900 Malus domestica HOM05D005125 ORTHO05D006777 7.6e-65 252.3 226 61.1
BcaNung05254 Brassica carinata HOM05D005125 ORTHO05D006777 6.7e-61 239.2 170 67.6
Oeu056206.2 Olea europaea HOM05D005125 ORTHO05D006777 3.9e-53 213.4 145 73.8
BolC9t55384H Brassica oleracea HOM05D005125 ORTHO05D006777 1.3e-43 181.8 162 64.2
SEGI_37631 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 1.3e-40 171.8 110 67.3
ECA233G3085 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.9e-40 170.6 108 71.3
MCO16G405 Micromonas commoda HOM05D005125 ORTHO05D006777 7.9e-38 162.5 127 55.1
SGA_v2.0_scaffold83G26467 Striga asiatica HOM05D005125 ORTHO05D006777 5.3e-34 149.8 165 52.1
Cc00_g07920 Coffea canephora HOM05D005125 ORTHO05D006777 4.0e-29 133.7 131 56.5
Sc15g0004440 Simmondsia chinensis HOM05D005125 ORTHO05D006777 2.6e-28 131.0 112 60.7
ECA238G2450 Erigeron canadensis HOM05D000240 ORTHO05D002721 2.2e-27 127.9 75 74.7
PRCOL_00005708 Prasinoderma coloniale HOM05D005125 ORTHO05D034490 4.5e-25 120.2 388 26.3
Cre16.g668950 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D034490 3.8e-24 117.1 295 28.5
Oeu035185.1 Olea europaea HOM05D005125 ORTHO05D006777 5.2e-21 106.7 86 62.8
Lsat_1_v5_gn_1_87521 Lactuca sativa HOM05D005125 ORTHO05D007904 1.4e-18 98.6 63 65.1
Cc10_g14360 Coffea canephora HOM05D005125 ORTHO05D006777 1.2e-14 85.5 58 69.0
TPR.G33884 Trifolium pratense HOM05D005125 ORTHO05D006777 4.7e-14 83.6 52 67.3
C04p25390 Brassica napus HOM05D005125 ORTHO05D041222 6.6e-08 63.2 80 45.0
BolC4t24047H Brassica oleracea HOM05D005125 ORTHO05D041222 6.6e-08 63.2 80 45.0
ECA233G5321 Erigeron canadensis HOM05D000003 ORTHO05D000004 8.6e-08 62.8 74 45.9


User provided reference genes

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