Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G3212 Papaver somniferum HOM05D005448 ORTHO05D006405 1.1e-145 520.0 263 100.0
PSO675G8542 Papaver somniferum HOM05D005448 ORTHO05D006405 5.9e-112 407.9 308 72.4
Dinv10698 Davidia involucrata HOM05D005448 ORTHO05D006405 5.5e-70 268.5 273 50.9
QL10p019149 Quercus lobata HOM05D005448 ORTHO05D006405 8.3e-66 254.6 302 47.4
Nn3g17421 Nelumbo nucifera HOM05D005448 ORTHO05D006405 1.1e-65 254.2 307 46.9
Atru.chr12.1057 Acer truncatum HOM05D005448 ORTHO05D006405 7.0e-65 251.5 288 46.5
Haze_07701 Corylus avellana HOM05D005448 ORTHO05D006405 9.2e-65 251.1 307 45.3
Actinidia38176 Actinidia chinensis HOM05D005448 ORTHO05D006405 2.7e-64 249.6 298 46.3
GSVIVG01007889001 Vitis vinifera HOM05D005448 ORTHO05D006405 4.5e-64 248.8 305 47.2
RcHm_v2.0_Chr7g0182771 Rosa chinensis HOM05D005448 ORTHO05D006405 5.0e-63 245.4 290 47.6
Sc25g0001780 Simmondsia chinensis HOM05D005448 ORTHO05D006405 6.6e-63 245.0 306 48.0
GSVIVG01007888001 Vitis vinifera HOM05D005448 ORTHO05D006405 1.1e-62 244.2 305 46.6
Hund02597 Selenicereus undatus HOM05D005448 ORTHO05D006405 7.3e-62 241.5 284 47.2
Medtr4g109400 Medicago truncatula HOM05D005448 ORTHO05D006405 1.2e-61 240.7 304 44.4
Eucgr.F03643 Eucalyptus grandis HOM05D005448 ORTHO05D006405 4.7e-61 238.8 299 44.1
Cpa.g.sc94.25 Carica papaya HOM05D005448 ORTHO05D006405 1.0e-60 237.7 299 44.1
RcHm_v2.0_Chr4g0399581 Rosa chinensis HOM05D005448 ORTHO05D006405 1.4e-60 237.3 290 47.9
Glyma.05G022400 Glycine max HOM05D005448 ORTHO05D006405 2.3e-60 236.5 305 43.9
MD17G1029400 Malus domestica HOM05D005448 ORTHO05D006405 2.6e-59 233.0 273 46.9
Migut.E01012 Erythranthe guttata HOM05D005448 ORTHO05D006405 4.4e-59 232.3 294 43.9
SGA_v2.0_scaffold313G48306 Striga asiatica HOM05D005448 ORTHO05D006405 5.7e-59 231.9 292 42.5
Phvul.003G185700 Phaseolus vulgaris HOM05D005448 ORTHO05D006405 9.8e-59 231.1 309 43.4
Ciclev10020839m.g Citrus clementina HOM05D005448 ORTHO05D006405 1.3e-58 230.7 299 43.5
FvH4_5g14050 Fragaria vesca HOM05D005448 ORTHO05D006405 1.3e-58 230.7 292 45.2
TPR.G2023 Trifolium pratense HOM05D005448 ORTHO05D006405 2.2e-58 229.9 304 44.1
Gohir.A11G033100 Gossypium hirsutum HOM05D005448 ORTHO05D006405 3.7e-58 229.2 295 44.4
Aqoxy3G03610 Aquilegia oxysepala HOM05D005448 ORTHO05D006405 4.9e-58 228.8 267 48.3
MSTRG.11359 Avicennia marina HOM05D005448 ORTHO05D006405 6.4e-58 228.4 277 45.8
Gohir.D11G036400 Gossypium hirsutum HOM05D005448 ORTHO05D006405 6.4e-58 228.4 293 44.0
Gorai.007G039200 Gossypium raimondii HOM05D005448 ORTHO05D006405 6.4e-58 228.4 293 44.0
Potri.018G051500 Populus trichocarpa HOM05D005448 ORTHO05D006405 6.4e-58 228.4 299 44.1
TAR636G2978 Trochodendron aralioides HOM05D005448 ORTHO05D006405 8.3e-58 228.0 296 44.9
CiPaw.11G051600 Carya illinoinensis HOM05D005448 ORTHO05D006405 2.4e-57 226.5 310 42.6
Prupe.7G041400 Prunus persica HOM05D005448 ORTHO05D006405 4.1e-57 225.7 278 43.9
PGR044G0604 Punica granatum HOM05D005448 ORTHO05D006405 4.1e-57 225.7 270 46.3
Lalb_Chr07g0178271 Lupinus albus HOM05D005448 ORTHO05D006405 5.4e-57 225.3 297 43.4
Thecc.03G099500 Theobroma cacao HOM05D005448 ORTHO05D006405 9.2e-57 224.6 292 44.2
Lj4g0022538 Lotus japonicus HOM05D005448 ORTHO05D006405 1.6e-56 223.8 305 43.6
FAN08G1797 Fragaria x ananassa HOM05D005448 ORTHO05D006405 2.0e-56 223.4 292 44.9
HanXRQChr05g0157251 Helianthus annuus HOM05D005448 ORTHO05D006405 2.0e-56 223.4 297 44.4
TAR371G1280 Trochodendron aralioides HOM05D005448 ORTHO05D006405 2.0e-56 223.4 315 42.5
Duzib205G1002 Durio zibethinus HOM05D005448 ORTHO05D006405 6.0e-56 221.9 293 43.0
TWI73G0142 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 7.8e-56 221.5 256 45.3
Rhsim12G0151600 Rhododendron simsii HOM05D005448 ORTHO05D006405 2.3e-55 219.9 275 46.5
TWI53G0232 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 2.3e-55 219.9 275 42.9
CANSAT11G2386 Cannabis sativa HOM05D005448 ORTHO05D006405 3.0e-55 219.5 304 44.4
Sabra18G0047800 Salix brachista HOM05D005448 ORTHO05D006405 3.9e-55 219.2 299 43.5
FAN18G0267 Fragaria x ananassa HOM05D005448 ORTHO05D006405 5.0e-55 218.8 292 44.2
Lj5A104G41 Lonicera japonica HOM05D005448 ORTHO05D006405 8.6e-55 218.0 298 43.0
CSS0038496 Camellia sinensis var. sinensis HOM05D005448 ORTHO05D006405 1.9e-54 216.9 303 42.9
CANSAT01G1259 Cannabis sativa HOM05D005448 ORTHO05D006405 1.9e-54 216.9 288 44.1
ECA246G3555 Erigeron canadensis HOM05D005448 ORTHO05D006405 7.3e-54 214.9 310 40.0
MD14G1210300 Malus domestica HOM05D005448 ORTHO05D006405 6.2e-53 211.8 271 44.3
CsaV3_6G039380 Cucumis sativus L. HOM05D005448 ORTHO05D006405 1.4e-52 210.7 300 41.0
MELO3C014255.2 Cucumis melo HOM05D005448 ORTHO05D006405 4.0e-52 209.1 300 40.3
AUR62021579 Chenopodium quinoa HOM05D005448 ORTHO05D006405 3.4e-51 206.1 306 41.5
Aa31LG3G18560 Aethionema arabicum HOM05D005448 ORTHO05D006405 2.9e-50 203.0 271 40.6
Psat4g047920 Pisum sativum HOM05D005448 ORTHO05D006405 4.9e-50 202.2 307 40.7
vmacro16506 Vaccinium macrocarpon HOM05D005448 ORTHO05D006405 4.9e-50 202.2 357 38.9
CAN.G587.40 Capsicum annuum HOM05D005448 ORTHO05D006405 6.4e-50 201.8 301 39.2
AUR62008511 Chenopodium quinoa HOM05D005448 ORTHO05D006405 8.3e-50 201.4 251 46.2
Manes.06G086000 Manihot esculenta HOM05D005448 ORTHO05D006405 8.3e-50 201.4 192 55.2
Os03g0213200 Oryza sativa ssp. japonica HOM05D005448 ORTHO05D006405 8.3e-50 201.4 271 42.1
Sp6g34990 Schrenkiella parvula HOM05D005448 ORTHO05D006405 8.3e-50 201.4 270 41.1
BcaB05g21593 Brassica carinata HOM05D005448 ORTHO05D006405 1.4e-49 200.7 302 40.1
MBI17_g24520_MAGBIO Magnolia biondii HOM05D005448 ORTHO05D006405 1.9e-49 200.3 287 41.8
Oeu001027.1 Olea europaea HOM05D005448 ORTHO05D006405 3.2e-49 199.5 180 56.1
SHI27027 Sapria himalayana HOM05D005448 ORTHO05D006405 4.1e-49 199.1 184 56.0
BolC2t06299H Brassica oleracea HOM05D005448 ORTHO05D006405 5.4e-49 198.7 284 38.7
AL6G18290 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 7.0e-49 198.4 283 40.3
PGSC0003DMG400033055 Solanum tuberosum HOM05D005448 ORTHO05D006405 1.2e-48 197.6 311 39.2
THA.LOC104801284 Tarenaya hassleriana HOM05D005448 ORTHO05D006405 1.2e-48 197.6 274 41.2
Ca_21785_v3 Cicer arietinum L. HOM05D005448 ORTHO05D006405 1.6e-48 197.2 202 54.5
Sopen06g026800 Solanum pennellii HOM05D005448 ORTHO05D006405 2.0e-48 196.8 305 40.3
C02p03370 Brassica napus HOM05D005448 ORTHO05D006405 2.7e-48 196.4 265 39.6
CARHR205240 Cardamine hirsuta HOM05D005448 ORTHO05D006405 2.7e-48 196.4 297 38.0
AT5G07950 Arabidopsis thaliana HOM05D005448 ORTHO05D006405 4.6e-48 195.7 296 39.2
Thhalv10014193m.g Eutrema salsugineum HOM05D005448 ORTHO05D006405 7.8e-48 194.9 270 40.7
Carub.0006s0685 Capsella rubella HOM05D005448 ORTHO05D006405 1.0e-47 194.5 301 37.9
Dinv17396 Davidia involucrata HOM05D005448 ORTHO05D006405 1.3e-47 194.1 222 47.3
BraA02t04938Z Brassica rapa HOM05D005448 ORTHO05D006405 3.0e-47 193.0 268 40.3
Cc04_g16850 Coffea canephora HOM05D005448 ORTHO05D006405 3.9e-47 192.6 288 41.0
Solyc06g069510.3 Solanum lycopersicum HOM05D005448 ORTHO05D006405 5.0e-47 192.2 290 41.4
Cc04_g13190 Coffea canephora HOM05D005448 ORTHO05D006405 6.6e-47 191.8 288 41.0
FAN13G0193 Fragaria x ananassa HOM05D005448 ORTHO05D006405 6.6e-47 191.8 253 43.9
ATR0064G115 Amborella trichopoda HOM05D005448 ORTHO05D006405 1.5e-46 190.7 262 40.5
Nitab4.5_0001688g0100 Nicotiana tabacum HOM05D005448 ORTHO05D006405 1.1e-44 184.5 203 51.7
arahy.Tifrunner.gnm1.ann1.6AQ98N Arachis hypogaea HOM05D005448 ORTHO05D006405 2.0e-43 180.3 288 39.9
BraA10t44915Z Brassica rapa HOM05D001913 ORTHO05D006405 5.8e-43 178.7 276 37.7
arahy.Tifrunner.gnm1.ann1.VF11UZ Arachis hypogaea HOM05D005448 ORTHO05D006405 8.3e-42 174.9 288 39.2
Zm00001eb400290 Zea mays HOM05D005448 ORTHO05D006405 8.3e-42 174.9 271 38.7
Nitab4.5_0000361g0060 Nicotiana tabacum HOM05D005448 ORTHO05D006405 1.1e-41 174.5 199 49.7
ClCG04G008840 Citrullus lanatus HOM05D005448 ORTHO05D006405 1.4e-41 174.1 300 37.7
BcaC03g13203 Brassica carinata HOM05D005448 ORTHO05D006405 1.2e-40 171.0 311 34.4
BcaC06g32511 Brassica carinata HOM05D001913 ORTHO05D008250 6.0e-40 168.7 241 39.8
C09p68980 Brassica napus HOM05D006409 ORTHO05D006405 2.3e-39 166.8 173 47.4
Zm00001eb400320 Zea mays HOM05D005448 ORTHO05D006405 1.9e-38 163.7 190 47.4
A10p28660 Brassica napus HOM05D006409 ORTHO05D008250 4.3e-38 162.5 176 48.9
Sed0024402 Sechium edule HOM05D005448 ORTHO05D006405 2.8e-37 159.8 195 47.2
Peaxi162Scf00013g00627 Petunia axillaris HOM05D005448 ORTHO05D006405 4.7e-37 159.1 304 35.2
DCAR_011598 Daucus carota HOM05D005448 ORTHO05D006405 2.4e-36 156.8 220 42.3
Ah.02g113960 Amaranthus hybridus HOM05D005448 ORTHO05D006405 4.0e-36 156.0 286 37.4
unitig_22.g5417 Utricularia gibba HOM05D005448 ORTHO05D006405 6.8e-36 155.2 275 36.7
DCAR_024881 Daucus carota HOM05D005448 ORTHO05D006405 4.1e-33 146.0 225 39.1
SEGI_17550 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 1.2e-29 134.4 156 43.6
SMO356G0523 Selaginella moellendorffii HOM05D005448 ORTHO05D006405 1.8e-28 130.6 163 42.3
Prupe.1G213800 Prunus persica HOM05D005448 ORTHO05D006405 2.4e-28 130.2 187 41.2
Mapoly0011s0155 Marchantia polymorpha HOM05D005448 ORTHO05D006405 2.6e-27 126.7 267 33.7
HPP92_004716 Vanilla planifolia HOM05D005448 ORTHO05D006405 1.3e-26 124.4 226 34.5
Lsat_1_v5_gn_5_23221 Lactuca sativa HOM05D005448 ORTHO05D006405 1.2e-24 117.9 170 40.6
VMungo1215G1798 Vigna mungo HOM05D005448 ORTHO05D006405 4.6e-24 115.9 120 52.5
AL3G46610 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.5e-19 100.9 118 43.2
BolC4t27763H Brassica oleracea HOM05D005448 ORTHO05D006405 4.5e-19 99.4 182 35.2
VMungo1215G2784 Vigna mungo HOM05D005448 ORTHO05D006405 5.8e-19 99.0 182 36.3
BcaC02g07836 Brassica carinata HOM05D005448 ORTHO05D006405 2.2e-18 97.1 185 34.6
C04p62800 Brassica napus HOM05D005448 ORTHO05D006405 1.4e-17 94.4 164 34.8
CBR_g39231 Chara braunii HOM05D005448 ORTHO05D006405 1.9e-17 94.0 168 36.9
AL1G28800 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.3e-15 87.8 100 45.0
SEGI_09353 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 6.7e-15 85.5 86 48.8
GSVIVG01007746001 Vitis vinifera HOM05D005448 ORTHO05D006405 7.4e-14 82.0 63 55.6
AL3G43910 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 2.1e-13 80.5 117 39.3
FvH4_5g14150 Fragaria vesca HOM05D005448 ORTHO05D006405 2.4e-12 77.0 136 37.5
Pp3c17_6410 Physcomitrium patens HOM05D005448 ORTHO05D006405 5.3e-12 75.9 217 30.0
AL1G43330 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 5.8e-11 72.4 86 43.0
AL4G20140 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 5.8e-11 72.4 86 43.0
BolC9t59642H Brassica oleracea HOM05D005448 ORTHO05D006405 4.9e-10 69.3 59 52.5
A04p25650 Brassica napus HOM05D005448 ORTHO05D006405 6.7e-07 58.9 68 41.2
BraA04t18069Z Brassica rapa HOM05D005448 ORTHO05D006405 6.7e-07 58.9 68 41.2
VMungo0647G2219 Vigna mungo HOM05D005448 ORTHO05D006405 5.6e-06 55.8 165 29.1


User provided reference genes

Program Settings