Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G3156 Papaver somniferum HOM05D004943 ORTHO05D005953 2.2e-114 415.6 204 100.0
PSO675G6228 Papaver somniferum HOM05D004943 ORTHO05D005953 2.0e-112 409.1 204 98.5
Aqoxy1G01190 Aquilegia oxysepala HOM05D004943 ORTHO05D005953 1.3e-87 326.6 204 75.5
Nn3g19397 Nelumbo nucifera HOM05D004943 ORTHO05D005953 1.3e-87 326.6 204 73.0
TAR375G0957 Trochodendron aralioides HOM05D004943 ORTHO05D005953 2.3e-87 325.9 204 74.0
Hma1.2p1_0023F.1_g015770 Hydrangea macrophylla HOM05D004943 ORTHO05D005953 3.3e-86 322.0 205 74.1
Dinv21530 Davidia involucrata HOM05D004943 ORTHO05D005953 4.7e-85 318.2 207 71.5
Actinidia35413 Actinidia chinensis HOM05D004943 ORTHO05D005953 1.4e-84 316.6 204 70.1
Actinidia37138 Actinidia chinensis HOM05D004943 ORTHO05D005953 2.0e-83 312.8 204 68.6
vmacro09630 Vaccinium macrocarpon HOM05D004943 ORTHO05D005953 4.4e-83 311.6 208 69.7
Atru.chr2.3743 Acer truncatum HOM05D004943 ORTHO05D005953 5.8e-83 311.2 205 70.7
Dinv32219 Davidia involucrata HOM05D004943 ORTHO05D005953 7.6e-83 310.8 207 70.5
CSS0046003 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 1.7e-82 309.7 205 70.2
GSVIVG01014728001 Vitis vinifera HOM05D004943 ORTHO05D005953 1.7e-82 309.7 208 70.7
Cfa016921 Carpinus fangiana HOM05D004943 ORTHO05D005953 3.2e-81 305.4 206 68.4
CiPaw.12G139900 Carya illinoinensis HOM05D004943 ORTHO05D005953 3.2e-81 305.4 205 68.3
CiPaw.11G205900 Carya illinoinensis HOM05D004943 ORTHO05D005953 4.1e-81 305.1 205 68.3
Lj1C893G4 Lonicera japonica HOM05D004943 ORTHO05D005953 7.1e-81 304.3 206 68.9
MD03G1030300 Malus domestica HOM05D004943 ORTHO05D005953 1.2e-80 303.5 205 69.8
TWI75G0785 Tripterygium wilfordii HOM05D004943 ORTHO05D005953 1.2e-80 303.5 204 70.1
MD11G1035300 Malus domestica HOM05D004943 ORTHO05D005953 1.6e-80 303.1 205 69.3
Gorai.009G451100 Gossypium raimondii HOM05D004943 ORTHO05D005953 7.8e-80 300.8 206 69.9
RcHm_v2.0_Chr5g0076271 Rosa chinensis HOM05D004943 ORTHO05D005953 7.8e-80 300.8 205 69.8
Gohir.A04G005400 Gossypium hirsutum HOM05D004943 ORTHO05D005953 1.7e-79 299.7 206 69.4
FvH4_3g42640 Fragaria vesca HOM05D004943 ORTHO05D005953 2.3e-79 299.3 205 68.8
FAN11G3459 Fragaria x ananassa HOM05D004943 ORTHO05D005953 2.3e-79 299.3 205 68.8
QL08p003376 Quercus lobata HOM05D004943 ORTHO05D005953 2.3e-79 299.3 204 66.7
ClCG04G005970 Citrullus lanatus HOM05D004943 ORTHO05D005953 3.0e-79 298.9 205 68.3
Gohir.D05G384300 Gossypium hirsutum HOM05D004943 ORTHO05D005953 6.6e-79 297.7 206 68.9
MELO3C019145.2 Cucumis melo HOM05D004943 ORTHO05D005953 8.6e-79 297.4 205 67.8
Prupe.6G026500 Prunus persica HOM05D004943 ORTHO05D005953 1.1e-78 297.0 205 67.3
Cc05_g15200 Coffea canephora HOM05D004943 ORTHO05D005953 1.5e-78 296.6 204 67.6
CsaV3_4G029170 Cucumis sativus L. HOM05D004943 ORTHO05D005953 1.5e-78 296.6 205 67.3
FAN21G2115 Fragaria x ananassa HOM05D004943 ORTHO05D005953 3.3e-78 295.4 205 67.8
Manes.15G058100 Manihot esculenta HOM05D004943 ORTHO05D005953 3.3e-78 295.4 203 67.0
Potri.001G370200 Populus trichocarpa HOM05D004943 ORTHO05D005953 3.3e-78 295.4 203 68.0
Duzib213G0469 Durio zibethinus HOM05D004943 ORTHO05D005953 5.6e-78 294.7 206 67.5
MBI12_g14493_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 9.6e-78 293.9 207 66.2
PGSC0003DMG400024208 Solanum tuberosum HOM05D004943 ORTHO05D005953 1.2e-77 293.5 206 68.9
C03p16160 Brassica napus HOM05D004943 ORTHO05D005953 1.6e-77 293.1 204 67.6
BolC3t14040H Brassica oleracea HOM05D004943 ORTHO05D005953 1.6e-77 293.1 204 67.6
COL.COLO4_07727 Corchorus olitorius HOM05D004943 ORTHO05D005953 1.6e-77 293.1 206 67.0
Haze_09852 Corylus avellana HOM05D004943 ORTHO05D005953 1.6e-77 293.1 228 62.3
Eucgr.F02035 Eucalyptus grandis HOM05D004943 ORTHO05D005953 1.6e-77 293.1 203 66.5
Potri.001G370000 Populus trichocarpa HOM05D004943 ORTHO05D005953 1.6e-77 293.1 203 68.0
Solyc07g009160.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 2.1e-77 292.7 206 68.4
A03p13760 Brassica napus HOM05D004943 ORTHO05D005953 2.8e-77 292.4 204 66.7
BcaB05g22236 Brassica carinata HOM05D004943 ORTHO05D005953 6.2e-77 291.2 204 67.2
BraA03t10679Z Brassica rapa HOM05D004943 ORTHO05D005953 8.1e-77 290.8 204 66.7
THA.LOC104813453 Tarenaya hassleriana HOM05D004943 ORTHO05D005953 8.1e-77 290.8 204 67.6
MSTRG.15804 Avicennia marina HOM05D004943 ORTHO05D005953 1.1e-76 290.4 205 67.3
Duzib170G0808 Durio zibethinus HOM05D004943 ORTHO05D005953 1.4e-76 290.0 203 67.0
AT5G55940 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 1.8e-76 289.7 204 68.1
Thecc.07G009400 Theobroma cacao HOM05D004943 ORTHO05D005953 1.8e-76 289.7 206 67.0
Sed0027327 Sechium edule HOM05D004943 ORTHO05D005953 2.4e-76 289.3 204 65.7
C02p15720 Brassica napus HOM05D004943 ORTHO05D005953 3.1e-76 288.9 204 67.2
Carub.0008s1627 Capsella rubella HOM05D004943 ORTHO05D005953 3.1e-76 288.9 204 68.1
Nitab4.5_0000366g0060 Nicotiana tabacum HOM05D004943 ORTHO05D005953 3.1e-76 288.9 205 68.3
Sopen07g017150 Solanum pennellii HOM05D004943 ORTHO05D005953 3.1e-76 288.9 206 67.5
CARHR269310 Cardamine hirsuta HOM05D004943 ORTHO05D005953 6.8e-76 287.7 204 66.7
Thhalv10014684m.g Eutrema salsugineum HOM05D004943 ORTHO05D005953 6.8e-76 287.7 204 66.2
CAN.G160.52 Capsicum annuum HOM05D004943 ORTHO05D005953 1.5e-75 286.6 206 67.0
HPP92_001543 Vanilla planifolia HOM05D004943 ORTHO05D005953 3.4e-75 285.4 206 63.6
BcaC04g20187 Brassica carinata HOM05D004943 ORTHO05D005953 5.8e-75 284.6 204 66.2
A10p13120 Brassica napus HOM05D004943 ORTHO05D005953 5.8e-75 284.6 204 66.2
C09p46880 Brassica napus HOM05D004943 ORTHO05D005953 5.8e-75 284.6 204 66.2
A02p09420 Brassica napus HOM05D004943 ORTHO05D005953 7.6e-75 284.3 204 64.7
BraA02t06006Z Brassica rapa HOM05D004943 ORTHO05D005953 7.6e-75 284.3 204 64.7
BraA10t43408Z Brassica rapa HOM05D004943 ORTHO05D005953 7.6e-75 284.3 204 66.2
Sp6g17790 Schrenkiella parvula HOM05D004943 ORTHO05D005953 9.9e-75 283.9 204 66.2
TAR374G0816 Trochodendron aralioides HOM05D004943 ORTHO05D005953 9.9e-75 283.9 205 67.3
Oeu039419.1 Olea europaea HOM05D004943 ORTHO05D005953 1.3e-74 283.5 205 65.4
BolC9t57538H Brassica oleracea HOM05D004943 ORTHO05D005953 2.2e-74 282.7 204 65.7
HanXRQChr04g0114541 Helianthus annuus HOM05D004943 ORTHO05D005953 2.2e-74 282.7 204 66.7
BolC2t07679H Brassica oleracea HOM05D004943 ORTHO05D005953 4.9e-74 281.6 203 66.0
BcaB08g35959 Brassica carinata HOM05D004943 ORTHO05D005953 8.4e-74 280.8 204 65.7
Sabra16G0243100 Salix brachista HOM05D004943 ORTHO05D005953 8.4e-74 280.8 256 55.9
Migut.H01743 Erythranthe guttata HOM05D004943 ORTHO05D005953 1.9e-73 279.6 203 67.5
PGSC0003DMG400008685 Solanum tuberosum HOM05D004943 ORTHO05D005953 3.2e-73 278.9 206 65.5
EL10Ac2g04777 Beta vulgaris HOM05D004943 ORTHO05D005953 5.4e-73 278.1 203 65.5
HanXRQChr11g0334381 Helianthus annuus HOM05D004943 ORTHO05D005953 5.4e-73 278.1 203 66.5
PGR083G1222 Punica granatum HOM05D004943 ORTHO05D005953 5.4e-73 278.1 205 65.4
Medtr5g096260 Medicago truncatula HOM05D004943 ORTHO05D005953 1.2e-72 276.9 202 63.9
MSTRG.7011 Avicennia marina HOM05D004943 ORTHO05D005953 1.6e-72 276.6 205 66.3
Sopen10g001750 Solanum pennellii HOM05D004943 ORTHO05D005953 1.6e-72 276.6 206 65.5
Aa31LG5G11950 Aethionema arabicum HOM05D004943 ORTHO05D005953 2.1e-72 276.2 204 63.7
ECA236G2729 Erigeron canadensis HOM05D004943 ORTHO05D005953 2.1e-72 276.2 205 63.9
Solyc10g005780.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 2.1e-72 276.2 206 65.0
AUR62022831 Chenopodium quinoa HOM05D004943 ORTHO05D005953 2.7e-72 275.8 203 66.0
Ca_06409_v3 Cicer arietinum L. HOM05D004943 ORTHO05D005953 2.7e-72 275.8 202 64.4
Ciclev10009430m.g Citrus clementina HOM05D004943 ORTHO05D005953 3.5e-72 275.4 194 66.5
SGA_v2.0_scaffold42G15954 Striga asiatica HOM05D004943 ORTHO05D005953 3.5e-72 275.4 205 65.4
AUR62012198 Chenopodium quinoa HOM05D004943 ORTHO05D005953 4.6e-72 275.0 203 65.5
Rhsim04G0011100 Rhododendron simsii HOM05D004943 ORTHO05D005953 4.6e-72 275.0 206 64.1
RcHm_v2.0_Chr5g0076591 Rosa chinensis HOM05D004943 ORTHO05D005953 4.6e-72 275.0 205 66.3
Glyma.02G301900 Glycine max HOM05D004943 ORTHO05D005953 1.0e-71 273.9 201 64.7
Lsat_1_v5_gn_5_190221 Lactuca sativa HOM05D004943 ORTHO05D005953 1.3e-71 273.5 206 64.1
Lalb_Chr13g0300511 Lupinus albus HOM05D004943 ORTHO05D005953 1.3e-71 273.5 205 62.4
Peaxi162Scf00324g00322 Petunia axillaris HOM05D004943 ORTHO05D005953 1.3e-71 273.5 204 65.2
arahy.Tifrunner.gnm1.ann1.5RSY3J Arachis hypogaea HOM05D004943 ORTHO05D005953 1.7e-71 273.1 203 62.6
arahy.Tifrunner.gnm1.ann1.7JU3J0 Arachis hypogaea HOM05D004943 ORTHO05D005953 1.7e-71 273.1 203 62.6
CSS0011268 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 3.0e-71 272.3 205 64.9
Oeu046942.1 Olea europaea HOM05D004943 ORTHO05D005953 3.9e-71 271.9 195 65.6
Aa31LG3G11850 Aethionema arabicum HOM05D004943 ORTHO05D005953 6.6e-71 271.2 214 60.7
Psat2g006640 Pisum sativum HOM05D004943 ORTHO05D005953 6.6e-71 271.2 202 62.4
TPR.G36515 Trifolium pratense HOM05D004943 ORTHO05D005953 1.1e-70 270.4 201 63.2
Phvul.008G280500 Phaseolus vulgaris HOM05D004943 ORTHO05D005953 1.5e-70 270.0 201 63.7
unitig_746.g26710 Utricularia gibba HOM05D004943 ORTHO05D005953 1.5e-70 270.0 196 64.8
Sc13g0002830 Simmondsia chinensis HOM05D004943 ORTHO05D005953 1.9e-70 269.6 210 63.3
LjContig00081g0027973 Lotus japonicus HOM05D004943 ORTHO05D005953 9.6e-70 267.3 202 61.9
Glyma.14G012300 Glycine max HOM05D004943 ORTHO05D005953 1.3e-69 266.9 201 61.7
Lj3g0015751 Lotus japonicus HOM05D004943 ORTHO05D005953 3.6e-69 265.4 203 61.1
VMungo0647G1317 Vigna mungo HOM05D004943 ORTHO05D005953 4.8e-69 265.0 201 62.7
Lalb_Chr07g0180111 Lupinus albus HOM05D004943 ORTHO05D005953 1.4e-68 263.5 205 60.5
SEGI_32834 Sequoiadendron giganteum HOM05D004943 ORTHO05D005953 9.0e-68 260.8 205 60.5
ATR0680G115 Amborella trichopoda HOM05D004943 ORTHO05D005953 2.0e-67 259.6 205 59.0
Os04g0270200 Oryza sativa ssp. japonica HOM05D004943 ORTHO05D005953 3.4e-67 258.8 208 58.2
Ah.16g103050 Amaranthus hybridus HOM05D000612 ORTHO05D000461 2.1e-64 249.6 194 60.8
Zm00001eb086910 Zea mays HOM05D004943 ORTHO05D005953 3.9e-63 245.4 209 55.0
Mapoly0118s0025 Marchantia polymorpha HOM05D004943 ORTHO05D005953 5.1e-55 218.4 215 50.7
Pp3c17_17770 Physcomitrium patens HOM05D004943 ORTHO05D005953 1.1e-54 217.2 211 50.2
SMO367G0477 Selaginella moellendorffii HOM05D004943 ORTHO05D005953 6.2e-53 211.5 211 49.3
Actinidia04992 Actinidia chinensis HOM05D004943 ORTHO05D005953 1.5e-51 206.8 145 68.3
MD01G1008800 Malus domestica HOM05D004943 ORTHO05D005953 2.2e-50 203.0 147 64.6
Cpa.g.sc12.130 Carica papaya HOM05D004943 ORTHO05D005953 6.5e-50 201.4 148 63.5
FAN25G1833 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.1e-49 200.7 138 68.1
DCAR_013248 Daucus carota HOM05D004943 ORTHO05D005953 1.4e-49 200.3 206 51.5
Nitab4.5_0007635g0010 Nicotiana tabacum HOM05D004943 ORTHO05D005953 3.5e-48 195.7 141 68.1
AagrBONN_evm.TU.Sc2ySwM_117.1155 Anthoceros agrestis HOM05D004943 ORTHO05D005953 1.6e-45 186.8 207 45.9
MBI12_g46257_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 1.1e-44 184.1 154 56.5
FAN16G1336 Fragaria x ananassa HOM05D004943 ORTHO05D005953 6.9e-44 181.4 148 61.5
Ah.10g036690 Amaranthus hybridus HOM05D000612 ORTHO05D000461 2.5e-41 172.9 128 66.4
Nitab4.5_0005478g0050 Nicotiana tabacum HOM05D004943 ORTHO05D005953 1.5e-35 153.7 181 48.1
Cre05.g240550 Chlamydomonas reinhardtii HOM05D004943 ORTHO05D005953 2.6e-30 136.3 194 36.6
PRCOL_00005958 Prasinoderma coloniale HOM05D004943 ORTHO05D005953 4.8e-29 132.1 194 40.2
CBR_g45852 Chara braunii HOM05D004943 ORTHO05D005953 4.1e-28 129.0 129 48.8
Nn1g00202 Nelumbo nucifera HOM05D004943 ORTHO05D005953 2.6e-27 126.3 80 71.2
MCO09G115 Micromonas commoda HOM05D004943 ORTHO05D005953 1.6e-24 117.1 204 37.7
Actinidia30384 Actinidia chinensis HOM05D004943 ORTHO05D005953 4.4e-22 109.0 138 43.5
Nn1g00203 Nelumbo nucifera HOM05D004943 ORTHO05D005953 4.4e-22 109.0 66 75.8
Atru.chr2.3756 Acer truncatum HOM05D004943 ORTHO05D005953 9.1e-20 101.3 101 48.5
Rhsim04G0226000 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.0e-18 97.8 70 67.1
TPR.G20059 Trifolium pratense HOM05D004943 ORTHO05D005953 4.2e-17 92.4 70 57.1
Atru.chr3.1978 Acer truncatum HOM05D004943 ORTHO05D005953 3.3e-14 82.8 63 60.3
AT5G51620 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 2.4e-12 76.6 50 66.0
Rhsim13G0193400 Rhododendron simsii HOM05D004943 ORTHO05D005953 5.9e-11 72.0 50 68.0
Rhsim13G0193700 Rhododendron simsii HOM05D004943 ORTHO05D005953 5.9e-11 72.0 50 68.0
Rhsim13G0193100 Rhododendron simsii HOM05D004943 ORTHO05D005953 3.8e-10 69.3 66 54.5
Pp3c14_20520 Physcomitrium patens HOM05D004943 ORTHO05D005953 1.9e-09 67.0 119 33.6
Oeu005474.1 Olea europaea HOM05D004943 ORTHO05D288151 3.2e-09 66.2 72 55.6
Hund22175 Selenicereus undatus HOM05D004943 ORTHO05D005953 4.7e-08 62.4 42 57.1
CBR_g17083 Chara braunii HOM05D004943 ORTHO05D005953 2.3e-07 60.1 81 40.7


User provided reference genes

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