Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G3127 Papaver somniferum HOM05D005683 ORTHO05D006958 5.7e-166 587.4 280 100.0
PSO675G7592 Papaver somniferum HOM05D005683 ORTHO05D006958 2.3e-159 565.5 280 96.1
TAR629G3446 Trochodendron aralioides HOM05D005683 ORTHO05D006958 3.3e-97 359.0 280 63.6
TAR626G0062 Trochodendron aralioides HOM05D005683 ORTHO05D006958 3.7e-96 355.5 277 62.8
TAR627G0612 Trochodendron aralioides HOM05D005683 ORTHO05D006958 7.2e-92 341.3 280 61.1
Dinv40458 Davidia involucrata HOM05D005683 ORTHO05D006958 1.8e-90 336.7 278 60.1
MBI02_g38754_MAGBIO Magnolia biondii HOM05D005683 ORTHO05D006958 2.0e-89 333.2 263 62.4
Nn1g03823 Nelumbo nucifera HOM05D005683 ORTHO05D006958 1.8e-87 326.6 277 58.8
GSVIVG01003677001 Vitis vinifera HOM05D005683 ORTHO05D006958 9.1e-87 324.3 249 62.2
Haze_06612 Corylus avellana HOM05D005683 ORTHO05D006958 1.6e-83 313.5 262 58.0
QL05p080525 Quercus lobata HOM05D005683 ORTHO05D006958 4.7e-83 312.0 266 57.9
CiPaw.09G156400 Carya illinoinensis HOM05D005683 ORTHO05D006958 3.3e-81 305.8 264 56.8
Actinidia24049 Actinidia chinensis HOM05D005683 ORTHO05D006958 4.4e-81 305.4 252 57.5
COL.COLO4_31635 Corchorus olitorius HOM05D005683 ORTHO05D006958 1.1e-79 300.8 265 54.3
Ciclev10016376m.g Citrus clementina HOM05D005683 ORTHO05D006958 1.8e-79 300.1 241 58.5
CiPaw.10G115800 Carya illinoinensis HOM05D005683 ORTHO05D006958 2.0e-78 296.6 233 61.4
Atru.chr10.2035 Acer truncatum HOM05D005683 ORTHO05D006958 2.6e-78 296.2 236 60.2
MBI02_g46153_MAGBIO Magnolia biondii HOM05D005683 ORTHO05D006958 5.9e-78 295.0 280 55.7
MD05G1328900 Malus domestica HOM05D005683 ORTHO05D006958 1.3e-77 293.9 256 55.1
Medtr2g011490 Medicago truncatula HOM05D005683 ORTHO05D006958 1.7e-77 293.5 251 57.0
Lj2A278T71 Lonicera japonica HOM05D005683 ORTHO05D006958 2.2e-77 293.1 253 54.9
TWI38G0326 Tripterygium wilfordii HOM05D005683 ORTHO05D006958 5.0e-77 292.0 246 57.7
Rhsim02G0118200 Rhododendron simsii HOM05D005683 ORTHO05D006958 8.5e-77 291.2 262 54.2
Rhsim02G0118400 Rhododendron simsii HOM05D005683 ORTHO05D006958 8.5e-77 291.2 262 54.2
AUR62012512 Chenopodium quinoa HOM05D005683 ORTHO05D006958 1.1e-76 290.8 261 54.4
Eucgr.E03677 Eucalyptus grandis HOM05D005683 ORTHO05D006958 1.1e-76 290.8 232 60.3
Manes.17G032900 Manihot esculenta HOM05D005683 ORTHO05D006958 1.1e-76 290.8 253 56.9
MD10G1305800 Malus domestica HOM05D005683 ORTHO05D006958 3.2e-76 289.3 258 55.0
MELO3C007336.2 Cucumis melo HOM05D005683 ORTHO05D006958 4.2e-76 288.9 263 52.9
PGR042G1297 Punica granatum HOM05D005683 ORTHO05D006958 9.4e-76 287.7 243 56.4
ClCG01G022390 Citrullus lanatus HOM05D005683 ORTHO05D006958 1.2e-75 287.3 263 52.5
Lj6g0011505 Lotus japonicus HOM05D005683 ORTHO05D006958 1.2e-75 287.3 250 56.0
SGA_v2.0_scaffold114G31992 Striga asiatica HOM05D005683 ORTHO05D006958 2.7e-75 286.2 268 55.2
Gohir.A05G166700 Gossypium hirsutum HOM05D005683 ORTHO05D006958 3.6e-75 285.8 264 53.4
Gohir.D05G169700 Gossypium hirsutum HOM05D005683 ORTHO05D006958 3.6e-75 285.8 264 53.4
Gorai.009G174900 Gossypium raimondii HOM05D005683 ORTHO05D006958 1.0e-74 284.3 264 53.4
Potri.011G040100 Populus trichocarpa HOM05D005683 ORTHO05D006958 1.8e-74 283.5 259 54.1
arahy.Tifrunner.gnm1.ann1.1EQ2T2 Arachis hypogaea HOM05D005683 ORTHO05D006958 8.8e-74 281.2 257 54.9
Sc17g0006760 Simmondsia chinensis HOM05D005683 ORTHO05D006958 8.8e-74 281.2 227 58.1
arahy.Tifrunner.gnm1.ann1.YX67LP Arachis hypogaea HOM05D005683 ORTHO05D006958 2.6e-73 279.6 258 55.0
Lalb_Chr05g0218101 Lupinus albus HOM05D005683 ORTHO05D006958 3.3e-73 279.3 250 52.8
Cc02_g12200 Coffea canephora HOM05D005683 ORTHO05D006958 1.3e-72 277.3 257 54.1
FAN21G2210 Fragaria x ananassa HOM05D005683 ORTHO05D006958 1.3e-72 277.3 260 52.7
TPR.G36735 Trifolium pratense HOM05D005683 ORTHO05D006958 2.8e-72 276.2 254 53.1
CsaV3_6G049570 Cucumis sativus L. HOM05D005683 ORTHO05D006958 4.8e-72 275.4 241 53.9
FvH4_3g03670 Fragaria vesca HOM05D005683 ORTHO05D006958 4.8e-72 275.4 259 52.5
FAN11G3671 Fragaria x ananassa HOM05D005683 ORTHO05D006958 4.8e-72 275.4 259 52.5
FAN16G0586 Fragaria x ananassa HOM05D005683 ORTHO05D006958 4.8e-72 275.4 259 52.5
Oeu021580.1 Olea europaea HOM05D005683 ORTHO05D006958 4.8e-72 275.4 255 54.9
Hund23579 Selenicereus undatus HOM05D005683 ORTHO05D006958 4.8e-72 275.4 241 57.7
Gohir.A10G019100 Gossypium hirsutum HOM05D005683 ORTHO05D006958 8.2e-72 274.6 256 53.5
RcHm_v2.0_Chr5g0005711 Rosa chinensis HOM05D005683 ORTHO05D006958 8.2e-72 274.6 264 51.5
MSTRG.7277 Avicennia marina HOM05D005683 ORTHO05D006958 1.4e-71 273.9 267 51.3
Ah.09g236340 Amaranthus hybridus HOM05D005683 ORTHO05D006958 4.1e-71 272.3 244 54.5
FAN25G1197 Fragaria x ananassa HOM05D005683 ORTHO05D006958 5.3e-71 271.9 260 51.9
Actinidia11820 Actinidia chinensis HOM05D003506 ORTHO05D006958 1.6e-70 270.4 198 62.6
Cpa.g.sc27.157 Carica papaya HOM05D005683 ORTHO05D006958 1.6e-70 270.4 257 56.0
Glyma.13G247700 Glycine max HOM05D005683 ORTHO05D006958 2.0e-70 270.0 263 53.6
Prupe.4G033900 Prunus persica HOM05D005683 ORTHO05D006958 2.0e-70 270.0 252 53.2
Sed0004151 Sechium edule HOM05D005683 ORTHO05D006958 3.5e-70 269.2 231 55.4
Ca_00226_v3 Cicer arietinum L. HOM05D005683 ORTHO05D006958 4.5e-70 268.9 238 57.1
VMungo0540G1177 Vigna mungo HOM05D005683 ORTHO05D006958 5.9e-70 268.5 261 52.1
Lalb_Chr18g0060021 Lupinus albus HOM05D005683 ORTHO05D006958 7.7e-70 268.1 263 50.6
Aa31LG1G3330 Aethionema arabicum HOM05D005683 ORTHO05D006958 1.0e-69 267.7 240 52.9
Gohir.D10G020000 Gossypium hirsutum HOM05D005683 ORTHO05D006958 1.3e-69 267.3 256 52.0
Sed0027497 Sechium edule HOM05D005683 ORTHO05D006958 1.7e-69 266.9 253 52.2
THA.LOC104818970 Tarenaya hassleriana HOM05D005683 ORTHO05D006958 1.7e-69 266.9 275 50.9
HPP92_000912 Vanilla planifolia HOM05D005683 ORTHO05D006958 1.7e-69 266.9 255 55.7
Glyma.15G066100 Glycine max HOM05D005683 ORTHO05D006958 2.2e-69 266.5 262 52.3
Gorai.011G021200 Gossypium raimondii HOM05D005683 ORTHO05D006958 2.2e-69 266.5 256 53.1
Phvul.006G193600 Phaseolus vulgaris HOM05D005683 ORTHO05D006958 2.2e-69 266.5 244 54.9
Potri.004G026700 Populus trichocarpa HOM05D005683 ORTHO05D006958 2.2e-69 266.5 270 49.6
Phvul.002G220600 Phaseolus vulgaris HOM05D005683 ORTHO05D006958 3.8e-69 265.8 266 50.8
TPR.G15376 Trifolium pratense HOM05D005683 ORTHO05D006958 1.1e-68 264.2 247 51.8
A06p08000 Brassica napus HOM05D005683 ORTHO05D006958 1.5e-68 263.8 242 52.9
BraA06t23999Z Brassica rapa HOM05D005683 ORTHO05D006958 1.5e-68 263.8 242 52.9
Carub.0001s1101 Capsella rubella HOM05D005683 ORTHO05D006958 1.9e-68 263.5 251 53.0
VMungo0251G1023 Vigna mungo HOM05D005683 ORTHO05D006958 4.2e-68 262.3 243 51.4
BcaC05g25012 Brassica carinata HOM05D005683 ORTHO05D006958 7.2e-68 261.5 242 52.5
Peaxi162Scf01035g00114 Petunia axillaris HOM05D005683 ORTHO05D006958 7.2e-68 261.5 234 56.0
BolC5t29702H Brassica oleracea HOM05D005683 ORTHO05D006958 1.2e-67 260.8 230 55.2
Hund21293 Selenicereus undatus HOM05D005683 ORTHO05D006958 1.2e-67 260.8 261 49.8
Sopen02g024190 Solanum pennellii HOM05D005683 ORTHO05D006958 1.2e-67 260.8 236 55.9
Zm00001eb323790 Zea mays HOM05D005683 ORTHO05D006958 1.6e-67 260.4 268 52.2
Manes.16G019184 Manihot esculenta HOM05D005683 ORTHO05D006958 2.1e-67 260.0 252 52.4
PGSC0003DMG400022348 Solanum tuberosum HOM05D005683 ORTHO05D006958 2.1e-67 260.0 236 55.1
C05p09600 Brassica napus HOM05D005683 ORTHO05D006958 2.7e-67 259.6 230 55.2
Thecc.06G202400 Theobroma cacao HOM05D005683 ORTHO05D006958 3.6e-67 259.2 261 51.0
AL1G22470 Arabidopsis lyrata HOM05D005683 ORTHO05D006958 4.7e-67 258.8 240 52.1
vmacro15855 Vaccinium macrocarpon HOM05D005683 ORTHO05D006958 4.7e-67 258.8 343 42.6
Solyc02g079390.4 Solanum lycopersicum HOM05D005683 ORTHO05D006958 6.1e-67 258.5 235 54.5
Nitab4.5_0000649g0210 Nicotiana tabacum HOM05D005683 ORTHO05D006958 8.0e-67 258.1 234 54.7
AT1G11380 Arabidopsis thaliana HOM05D005683 ORTHO05D006958 6.8e-66 255.0 240 51.7
CANSAT56G4448 Cannabis sativa HOM05D005683 ORTHO05D006958 1.5e-65 253.8 252 51.6
Migut.H01529 Erythranthe guttata HOM05D005683 ORTHO05D006958 1.3e-64 250.8 233 53.2
Medtr4g091550 Medicago truncatula HOM05D005683 ORTHO05D006958 3.7e-64 249.2 247 51.8
CARHR011620 Cardamine hirsuta HOM05D005683 ORTHO05D006958 8.3e-64 248.1 242 51.7
Migut.M01228 Erythranthe guttata HOM05D005683 ORTHO05D006958 1.1e-63 247.7 240 51.7
Lalb_Chr09g0327231 Lupinus albus HOM05D005683 ORTHO05D006958 2.4e-63 246.5 204 56.4
Ca_18471_v3 Cicer arietinum L. HOM05D005683 ORTHO05D006958 9.1e-63 244.6 226 51.8
Nitab4.5_0005620g0030 Nicotiana tabacum HOM05D005683 ORTHO05D006958 2.0e-62 243.4 256 49.6
Lj1A1216T22 Lonicera japonica HOM05D005683 ORTHO05D006958 2.7e-62 243.0 224 53.1
HanXRQChr15g0482541 Helianthus annuus HOM05D005683 ORTHO05D006958 3.5e-62 242.7 214 55.1
Lsat_1_v5_gn_7_20320 Lactuca sativa HOM05D005683 ORTHO05D006958 4.5e-62 242.3 228 51.8
Lj4g0024466 Lotus japonicus HOM05D005683 ORTHO05D006958 3.8e-61 239.2 245 50.6
Glyma.07G188900 Glycine max HOM05D005683 ORTHO05D006958 6.5e-61 238.4 268 46.3
CDE02G0678 Ceratophyllum demersum HOM05D005683 ORTHO05D006958 1.5e-60 237.3 273 47.3
DCAR_004160 Daucus carota HOM05D005683 ORTHO05D006958 1.9e-60 236.9 237 53.2
CAN.G424.37 Capsicum annuum HOM05D005683 ORTHO05D006958 4.7e-59 232.3 211 55.5
arahy.Tifrunner.gnm1.ann1.NC80VA Arachis hypogaea HOM05D005683 ORTHO05D006958 4.0e-58 229.2 259 47.9
arahy.Tifrunner.gnm1.ann1.B3SD72 Arachis hypogaea HOM05D005683 ORTHO05D006958 1.3e-56 224.2 259 47.5
unitig_748.g7566 Utricularia gibba HOM05D005683 ORTHO05D006958 1.3e-56 224.2 247 50.2
EL10Ac8g19981 Beta vulgaris HOM05D005683 ORTHO05D006958 4.5e-54 215.7 263 43.7
Duzib235G0662 Durio zibethinus HOM05D005683 ORTHO05D006958 8.6e-53 211.5 258 45.7
ECA236G4035 Erigeron canadensis HOM05D005683 ORTHO05D006958 3.3e-52 209.5 238 46.6
Duzib192G0920 Durio zibethinus HOM05D005683 ORTHO05D006958 3.0e-50 203.0 269 43.5
ATR1132G083 Amborella trichopoda HOM05D005683 ORTHO05D006958 4.0e-50 202.6 150 58.0
CSS0013005 Camellia sinensis var. sinensis HOM05D005683 ORTHO05D006958 1.7e-45 187.2 173 53.2
AUR62014686 Chenopodium quinoa HOM05D005683 ORTHO05D006958 5.0e-45 185.7 224 42.0
TAR629G2478 Trochodendron aralioides HOM05D005683 ORTHO05D006958 2.1e-43 180.3 171 57.9
CSS0013141 Camellia sinensis var. sinensis HOM05D005683 ORTHO05D006958 6.1e-43 178.7 196 46.9
Psat1g209480 Pisum sativum HOM05D005683 ORTHO05D006958 4.0e-42 176.0 138 58.7
Glyma.08G060400 Glycine max HOM05D005683 ORTHO05D006958 5.4e-39 165.6 149 53.0
Pp3c18_19760 Physcomitrium patens HOM05D005683 ORTHO05D006958 3.1e-34 149.8 156 45.5
Pp3c21_1800 Physcomitrium patens HOM05D005683 ORTHO05D006958 5.2e-34 149.1 155 45.8
CDE05G0673 Ceratophyllum demersum HOM05D005683 ORTHO05D006958 4.6e-30 136.0 152 45.4
Prupe.5G244100 Prunus persica HOM05D005683 ORTHO05D006958 1.6e-22 110.9 79 58.2
SGA_v2.0_scaffold42G16089 Striga asiatica HOM05D005683 ORTHO05D006958 2.7e-22 110.2 145 45.5
Sp1g10010 Schrenkiella parvula HOM05D005683 ORTHO05D006958 1.9e-20 104.0 246 33.3
Psat1g209520 Pisum sativum HOM05D005683 ORTHO05D006958 1.5e-17 94.4 104 51.0
CBR_g51429 Chara braunii HOM05D005683 ORTHO05D006958 6.6e-13 79.0 110 36.4
Mapoly0084s0076 Marchantia polymorpha HOM05D002715 ORTHO05D002996 5.6e-12 75.9 149 34.2
CBR_g50374 Chara braunii HOM05D005683 ORTHO05D006958 3.6e-11 73.2 180 31.7
Lsat_1_v5_gn_2_125901 Lactuca sativa HOM05D002715 ORTHO05D002996 9.0e-10 68.6 204 28.9
CSS0030399 Camellia sinensis var. sinensis HOM05D002715 ORTHO05D002996 1.5e-09 67.8 160 29.4
Cc11_g08150 Coffea canephora HOM05D000414 ORTHO05D000276 2.0e-09 67.4 131 31.3
HanXRQChr09g0252171 Helianthus annuus HOM05D002715 ORTHO05D002996 7.6e-09 65.5 144 32.6
ClCG04G006560 Citrullus lanatus HOM05D002715 ORTHO05D002996 9.9e-09 65.1 210 26.2
Carub.0001s4117 Capsella rubella HOM05D000414 ORTHO05D000276 1.3e-08 64.7 155 30.3
CiPaw.09G216800 Carya illinoinensis HOM05D002715 ORTHO05D002996 2.9e-08 63.5 169 27.8
HanXRQChr14g0458821 Helianthus annuus HOM05D002715 ORTHO05D002996 2.9e-08 63.5 149 29.5
Lsat_1_v5_gn_9_58621 Lactuca sativa HOM05D002715 ORTHO05D002996 2.9e-08 63.5 132 30.3
HPP92_012010 Vanilla planifolia HOM05D002715 ORTHO05D002996 4.9e-08 62.8 143 28.0
GSVIVG01031754001 Vitis vinifera HOM05D000414 ORTHO05D000276 4.9e-08 62.8 150 29.3
CsaV3_4G026940 Cucumis sativus L. HOM05D002715 ORTHO05D002996 6.4e-08 62.4 216 25.0
AT1G52200 Arabidopsis thaliana HOM05D000414 ORTHO05D000276 8.4e-08 62.0 168 29.2
Dinv35429 Davidia involucrata HOM05D002715 ORTHO05D002996 8.4e-08 62.0 152 29.6
MELO3C026042.2 Cucumis melo HOM05D002715 ORTHO05D002996 1.1e-07 61.6 217 25.3
HanXRQChr07g0203561 Helianthus annuus HOM05D002715 ORTHO05D002996 1.1e-07 61.6 158 30.4
Cpa.g.sc19.104 Carica papaya HOM05D002715 ORTHO05D002996 1.4e-07 61.2 152 28.3
ECA238G4170 Erigeron canadensis HOM05D002715 ORTHO05D002996 1.4e-07 61.2 140 30.7
TWI53G1949 Tripterygium wilfordii HOM05D002715 ORTHO05D002996 1.9e-07 60.8 160 29.4
Aa31LG10G2700 Aethionema arabicum HOM05D000414 ORTHO05D000276 3.2e-07 60.1 137 27.7
Haze_17268 Corylus avellana HOM05D000212 ORTHO05D002824 3.2e-07 60.1 142 28.2
SMO230G0095 Selaginella moellendorffii HOM05D002715 ORTHO05D002996 4.2e-07 59.7 140 27.1
TWI74G1037 Tripterygium wilfordii HOM05D000414 ORTHO05D000276 4.2e-07 59.7 138 29.7
BolC6t35833H Brassica oleracea HOM05D000414 ORTHO05D000276 7.1e-07 58.9 150 28.0
Sed0005582 Sechium edule HOM05D002715 ORTHO05D002996 7.1e-07 58.9 163 27.0
COL.COLO4_14430 Corchorus olitorius HOM05D002715 ORTHO05D002996 9.3e-07 58.5 152 28.9
SEGI_26636 Sequoiadendron giganteum HOM05D000414 ORTHO05D000276 1.2e-06 58.2 144 25.7
CARHR042340 Cardamine hirsuta HOM05D000414 ORTHO05D000276 1.6e-06 57.8 138 28.3
Thecc.10G007700 Theobroma cacao HOM05D002715 ORTHO05D002996 1.6e-06 57.8 133 28.6
Pp3c4_21070 Physcomitrium patens HOM05D002715 ORTHO05D002996 2.1e-06 57.4 140 27.9
QL08p064219 Quercus lobata HOM05D002715 ORTHO05D002996 2.1e-06 57.4 132 28.8
Sabra16G0129000 Salix brachista HOM05D002715 ORTHO05D002996 2.1e-06 57.4 152 27.0
TWI53G2030 Tripterygium wilfordii HOM05D002715 ORTHO05D002996 2.1e-06 57.4 133 30.1
BcaB06g25888 Brassica carinata HOM05D000414 ORTHO05D000276 2.7e-06 57.0 129 29.5
Cc02_g28700 Coffea canephora HOM05D000414 ORTHO05D000276 3.5e-06 56.6 139 28.1
FvH4_2g06180 Fragaria vesca HOM05D000414 ORTHO05D000276 3.5e-06 56.6 141 30.5
FAN24G3240 Fragaria x ananassa HOM05D000414 ORTHO05D000276 3.5e-06 56.6 141 30.5
A06p01980 Brassica napus HOM05D000414 ORTHO05D000276 4.6e-06 56.2 150 28.7
C06p07440 Brassica napus HOM05D000414 ORTHO05D000276 4.6e-06 56.2 150 28.7
BraA06t23414Z Brassica rapa HOM05D000414 ORTHO05D000276 4.6e-06 56.2 150 28.7
Lj6A741T78 Lonicera japonica HOM05D000414 ORTHO05D000276 4.6e-06 56.2 138 27.5
GSVIVG01031755001 Vitis vinifera HOM05D000414 ORTHO05D000276 4.6e-06 56.2 141 27.7
Ciclev10011383m.g Citrus clementina HOM05D002715 ORTHO05D002996 6.0e-06 55.8 142 28.2
Lj6A804T66 Lonicera japonica HOM05D000414 ORTHO05D000276 6.0e-06 55.8 130 27.7
CiPaw.02G197100 Carya illinoinensis HOM05D002715 ORTHO05D002996 7.9e-06 55.5 132 28.0
Eucgr.B00708 Eucalyptus grandis HOM05D000414 ORTHO05D000276 7.9e-06 55.5 140 28.6
HPP92_023292 Vanilla planifolia HOM05D000414 ORTHO05D000276 7.9e-06 55.5 142 26.8


User provided reference genes

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