Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G3108 Papaver somniferum HOM05D004539 ORTHO05D005482 5.3e-290 1000.3 527 100.0
PSO675G8916 Papaver somniferum HOM05D004539 ORTHO05D005482 2.8e-283 978.0 528 97.9
Nn6g32243 Nelumbo nucifera HOM05D004539 ORTHO05D005482 1.6e-132 477.2 569 51.3
TAR629G0090 Trochodendron aralioides HOM05D004539 ORTHO05D005482 9.9e-127 458.0 578 49.5
Dinv31810 Davidia involucrata HOM05D004539 ORTHO05D005482 2.9e-126 456.4 554 50.5
COL.COLO4_38586 Corchorus olitorius HOM05D004539 ORTHO05D005482 1.0e-123 448.0 555 48.6
vmacro21700 Vaccinium macrocarpon HOM05D004539 ORTHO05D005482 1.7e-123 447.2 558 52.5
COL.COLO4_16338 Corchorus olitorius HOM05D004539 ORTHO05D005482 5.1e-123 445.7 560 49.6
Duzib192G0399 Durio zibethinus HOM05D004539 ORTHO05D005482 9.6e-122 441.4 556 49.5
Rhsim06G0026400 Rhododendron simsii HOM05D004539 ORTHO05D005482 6.2e-121 438.7 557 51.3
CiPaw.08G062700 Carya illinoinensis HOM05D004539 ORTHO05D005482 8.1e-121 438.3 559 51.2
Manes.05G152500 Manihot esculenta HOM05D004539 ORTHO05D005482 1.4e-120 437.6 567 50.1
Prupe.1G370700 Prunus persica HOM05D004539 ORTHO05D005482 3.1e-120 436.4 553 49.9
DCAR_013849 Daucus carota HOM05D004539 ORTHO05D005482 4.0e-120 436.0 568 50.0
CANSAT54G2989 Cannabis sativa HOM05D004539 ORTHO05D005482 1.2e-119 434.5 564 48.8
Cfa013903 Carpinus fangiana HOM05D004539 ORTHO05D005482 1.5e-119 434.1 536 52.1
Lj1g0010849 Lotus japonicus HOM05D004539 ORTHO05D005482 3.8e-118 429.5 537 51.0
Thecc.04G277100 Theobroma cacao HOM05D004539 ORTHO05D005482 4.9e-118 429.1 562 49.5
Gorai.001G253500 Gossypium raimondii HOM05D004539 ORTHO05D005482 1.1e-117 427.9 561 47.6
Atru.chr13.359 Acer truncatum HOM05D004539 ORTHO05D005482 1.9e-117 427.2 537 51.6
Gohir.D07G219000 Gossypium hirsutum HOM05D004539 ORTHO05D005482 3.2e-117 426.4 561 47.6
Haze_22584 Corylus avellana HOM05D004539 ORTHO05D005482 5.4e-117 425.6 530 51.9
Cpa.g.sc147.12 Carica papaya HOM05D004539 ORTHO05D005482 1.2e-116 424.5 564 46.1
Hma1.2p1_0773F.1_g216150 Hydrangea macrophylla HOM05D004539 ORTHO05D005482 1.6e-116 424.1 568 50.2
Sed0008828 Sechium edule HOM05D004539 ORTHO05D005482 1.6e-116 424.1 542 50.2
MD15G1017400 Malus domestica HOM05D004539 ORTHO05D005482 2.7e-116 423.3 560 51.2
Gohir.A07G212900 Gossypium hirsutum HOM05D004539 ORTHO05D005482 7.9e-116 421.8 561 48.1
Hund17219 Selenicereus undatus HOM05D004539 ORTHO05D005482 1.3e-115 421.0 552 48.4
MD08G1018100 Malus domestica HOM05D004539 ORTHO05D005482 1.1e-114 417.9 563 50.1
TAR628G0025 Trochodendron aralioides HOM05D004539 ORTHO05D005482 8.1e-113 411.8 565 46.7
Dinv39486 Davidia involucrata HOM05D004539 ORTHO05D005482 1.1e-112 411.4 557 49.0
Glyma.05G023000 Glycine max HOM05D004539 ORTHO05D005482 5.3e-112 409.1 539 50.6
GSVIVG01009825001 Vitis vinifera HOM05D004539 ORTHO05D005482 1.2e-111 407.9 532 49.6
Glyma.17G076700 Glycine max HOM05D004539 ORTHO05D005482 2.0e-111 407.1 536 50.7
Potri.005G234800 Populus trichocarpa HOM05D004539 ORTHO05D005482 2.6e-111 406.8 563 49.6
Sed0017053 Sechium edule HOM05D004539 ORTHO05D005482 2.6e-111 406.8 553 49.4
Sc02g0002900 Simmondsia chinensis HOM05D004539 ORTHO05D005482 4.5e-111 406.0 550 48.7
TWI60G0405 Tripterygium wilfordii HOM05D004539 ORTHO05D005482 9.9e-111 404.8 564 48.2
Thhalv10010315m.g Eutrema salsugineum HOM05D004539 ORTHO05D005482 1.7e-110 404.1 538 48.5
Hund26867 Selenicereus undatus HOM05D004539 ORTHO05D005482 3.8e-110 402.9 546 46.5
arahy.Tifrunner.gnm1.ann1.D3BLAG Arachis hypogaea HOM05D004539 ORTHO05D005482 6.4e-110 402.1 565 48.1
PGR031G2058 Punica granatum HOM05D004539 ORTHO05D005482 6.4e-110 402.1 545 48.1
Lj4A486G10 Lonicera japonica HOM05D004539 ORTHO05D005482 9.3e-109 398.3 608 46.9
Cpa.g.sc140.19 Carica papaya HOM05D004539 ORTHO05D005482 2.7e-108 396.7 563 47.6
Lalb_Chr03g0033831 Lupinus albus HOM05D004539 ORTHO05D005482 2.7e-108 396.7 528 48.3
Sabra05G0181000 Salix brachista HOM05D004539 ORTHO05D005482 7.9e-108 395.2 561 48.7
THA.LOC104813189 Tarenaya hassleriana HOM05D004539 ORTHO05D005482 2.3e-107 393.7 537 49.0
Lsat_1_v5_gn_4_116341 Lactuca sativa HOM05D004539 ORTHO05D005482 6.7e-107 392.1 550 46.7
Sabra02G0022100 Salix brachista HOM05D004539 ORTHO05D005482 1.1e-106 391.3 568 47.5
CsaV3_3G001200 Cucumis sativus L. HOM05D004539 ORTHO05D005482 2.5e-106 390.2 563 47.6
Phvul.003G186400 Phaseolus vulgaris HOM05D004539 ORTHO05D005482 9.6e-106 388.3 537 50.3
Oeu036929.3 Olea europaea HOM05D004539 ORTHO05D005482 6.2e-105 385.6 581 45.4
VMungo1215G0403 Vigna mungo HOM05D004539 ORTHO05D005482 4.0e-104 382.9 536 50.2
arahy.Tifrunner.gnm1.ann1.ME0SR7 Arachis hypogaea HOM05D004539 ORTHO05D005482 5.3e-104 382.5 564 45.9
Aqoxy7G01402 Aquilegia oxysepala HOM05D004539 ORTHO05D005482 1.2e-103 381.3 508 49.0
Lj2g0012026 Lotus japonicus HOM05D004539 ORTHO05D005482 3.4e-103 379.8 537 48.0
Lj4C484T3 Lonicera japonica HOM05D004539 ORTHO05D005482 4.5e-103 379.4 517 48.5
SGA_v2.0_scaffold4G01895 Striga asiatica HOM05D004539 ORTHO05D005482 5.8e-103 379.0 557 45.8
MELO3C013810.2 Cucumis melo HOM05D004539 ORTHO05D005482 7.6e-103 378.6 564 45.6
SGA_v2.0_scaffold92G28288 Striga asiatica HOM05D004539 ORTHO05D005482 1.3e-102 377.9 557 45.8
Psat7g263720 Pisum sativum HOM05D004539 ORTHO05D005482 1.7e-102 377.5 540 49.6
SalBow6G1219 Salvia bowleyana HOM05D004539 ORTHO05D005482 1.7e-102 377.5 543 46.0
Ca_11952_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 4.2e-101 372.9 539 48.2
ClCG05G018590 Citrullus lanatus HOM05D004539 ORTHO05D005482 7.1e-101 372.1 624 42.5
Actinidia29798 Actinidia chinensis HOM05D004539 ORTHO05D005482 2.7e-100 370.2 540 48.3
Nitab4.5_0012730g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 6.0e-100 369.0 550 48.4
CAN.G851.13 Capsicum annuum HOM05D004539 ORTHO05D005482 7.9e-100 368.6 548 49.5
Ciclev10004791m.g Citrus clementina HOM05D004539 ORTHO05D005482 1.3e-99 367.9 550 47.5
MSTRG.25219 Avicennia marina HOM05D004539 ORTHO05D005482 2.3e-99 367.1 552 46.6
Migut.C00791 Erythranthe guttata HOM05D004539 ORTHO05D005482 2.3e-99 367.1 546 46.2
Medtr4g022890 Medicago truncatula HOM05D004539 ORTHO05D005482 1.5e-98 364.4 536 50.2
Cc10_g02110 Coffea canephora HOM05D004539 ORTHO05D005482 2.5e-98 363.6 547 46.4
ECA232G1826 Erigeron canadensis HOM05D004539 ORTHO05D005482 5.7e-98 362.5 532 47.0
ATR0691G247 Amborella trichopoda HOM05D004539 ORTHO05D005482 2.1e-97 360.5 560 43.9
TPR.G5561 Trifolium pratense HOM05D004539 ORTHO05D005482 6.2e-97 359.0 545 48.3
Sp5g12110 Schrenkiella parvula HOM05D004539 ORTHO05D005482 2.4e-96 357.1 542 46.1
EL10Ac1g00555 Beta vulgaris HOM05D004539 ORTHO05D005482 9.0e-96 355.1 534 45.7
HPP92_016110 Vanilla planifolia HOM05D004539 ORTHO05D005482 9.0e-96 355.1 568 43.7
AUR62042221 Chenopodium quinoa HOM05D004539 ORTHO05D005482 1.2e-95 354.8 538 46.7
Carub.0005s1635 Capsella rubella HOM05D004539 ORTHO05D005482 3.4e-95 353.2 533 45.8
Aa31LG4G18400 Aethionema arabicum HOM05D004539 ORTHO05D005482 4.5e-95 352.8 534 46.4
AL5G30050 Arabidopsis lyrata HOM05D004539 ORTHO05D005482 4.5e-95 352.8 545 42.8
AUR62034567 Chenopodium quinoa HOM05D004539 ORTHO05D005482 4.5e-95 352.8 538 46.8
Ca_22519_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 7.6e-95 352.1 538 47.2
BcaC06g33116 Brassica carinata HOM05D004539 ORTHO05D005482 6.5e-94 349.0 544 46.0
AT3G49990 Arabidopsis thaliana HOM05D004539 ORTHO05D005482 1.4e-93 347.8 537 44.9
Ciclev10011488m.g Citrus clementina HOM05D004539 ORTHO05D005482 2.5e-93 347.1 527 47.4
Solyc04g081030.3 Solanum lycopersicum HOM05D004539 ORTHO05D005482 2.3e-91 340.5 468 48.5
CARHR159060 Cardamine hirsuta HOM05D004539 ORTHO05D005482 6.7e-91 339.0 539 44.9
FAN20G1687 Fragaria x ananassa HOM05D004539 ORTHO05D005482 6.7e-91 339.0 544 46.1
BraA03t13876Z Brassica rapa HOM05D004539 ORTHO05D005482 1.5e-90 337.8 538 45.0
A03p47640 Brassica napus HOM05D004539 ORTHO05D005482 1.9e-90 337.4 541 44.9
CDE12G0120 Ceratophyllum demersum HOM05D004539 ORTHO05D005482 2.5e-90 337.0 575 41.2
RcHm_v2.0_Chr6g0302141 Rosa chinensis HOM05D004539 ORTHO05D005482 8.2e-89 332.0 541 46.4
FAN15G3183 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.4e-88 331.3 544 45.2
FvH4_2g39030 Fragaria vesca HOM05D004539 ORTHO05D005482 1.8e-88 330.9 544 45.4
Sopen04g034650 Solanum pennellii HOM05D004539 ORTHO05D005482 3.1e-88 330.1 468 48.1
FAN27G2077 Fragaria x ananassa HOM05D004539 ORTHO05D005482 4.1e-88 329.7 544 45.4
AUR62014430 Chenopodium quinoa HOM05D004539 ORTHO05D005482 5.3e-88 329.3 540 44.4
unitig_578.g16661 Utricularia gibba HOM05D004539 ORTHO05D005482 5.3e-88 329.3 544 41.9
MBI05_g04844_MAGBIO Magnolia biondii HOM05D004539 ORTHO05D005482 9.0e-88 328.6 733 36.2
Ah.02g124950 Amaranthus hybridus HOM05D004539 ORTHO05D005482 2.0e-87 327.4 536 44.2
BolC7t45082H Brassica oleracea HOM05D004539 ORTHO05D005482 5.9e-87 325.9 543 44.0
PGSC0003DMG400003712 Solanum tuberosum HOM05D004539 ORTHO05D005482 7.2e-85 318.9 517 43.9
BcaC06g33276 Brassica carinata HOM05D004539 ORTHO05D005482 9.4e-85 318.5 545 43.7
C07p45610 Brassica napus HOM05D004539 ORTHO05D005482 9.4e-85 318.5 545 43.7
Peaxi162Scf00287g00122 Petunia axillaris HOM05D004539 ORTHO05D005482 9.4e-85 318.5 560 44.8
Oeu030391.1 Olea europaea HOM05D004539 ORTHO05D005482 6.1e-84 315.8 530 42.5
Lj4C792T1 Lonicera japonica HOM05D004539 ORTHO05D005482 5.7e-82 309.3 568 42.6
HanXRQChr09g0269371 Helianthus annuus HOM05D004539 ORTHO05D005482 4.1e-80 303.1 438 46.1
SEGI_17236 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 2.2e-70 270.8 591 36.5
CAN.G851.15 Capsicum annuum HOM05D004539 ORTHO05D005482 3.0e-67 260.4 452 43.1
QL02p010726 Quercus lobata HOM05D004539 ORTHO05D005482 9.7e-66 255.4 296 54.7
Os03g0372700 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 7.0e-64 249.2 533 40.5
Zm00001eb394100 Zea mays HOM05D004539 ORTHO05D005482 1.6e-63 248.1 526 40.1
Zm00001eb394110 Zea mays HOM05D004539 ORTHO05D005482 1.6e-63 248.1 526 40.1
Zm00001eb018110 Zea mays HOM05D004539 ORTHO05D005482 3.8e-62 243.4 523 42.1
Eucgr.E04075 Eucalyptus grandis HOM05D004539 ORTHO05D005482 4.8e-57 226.5 321 47.0
Cpa.g.sc1191.1 Carica papaya HOM05D004539 ORTHO05D005482 8.3e-57 225.7 300 48.7
Pp3c26_3100 Physcomitrium patens HOM05D004539 ORTHO05D005482 1.4e-48 198.4 595 34.6
FvH4_7g07450 Fragaria vesca HOM05D004539 ORTHO05D005482 2.3e-46 191.0 410 39.3
Mapoly0079s0035 Marchantia polymorpha HOM05D004539 ORTHO05D005482 2.9e-46 190.7 599 31.7
FAN10G3704 Fragaria x ananassa HOM05D004539 ORTHO05D005482 5.2e-43 179.9 415 41.0
SEGI_09517 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 2.0e-42 177.9 429 34.7
QL02p010735 Quercus lobata HOM05D004539 ORTHO05D005482 1.8e-40 171.4 257 45.9
Nitab4.5_0006718g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 2.0e-39 167.9 191 53.9
TAR628G0156 Trochodendron aralioides HOM05D004539 ORTHO05D005482 3.1e-35 154.1 182 51.6
FAN22G0834 Fragaria x ananassa HOM05D004539 ORTHO05D005482 8.9e-35 152.5 296 41.6
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 5.8e-34 149.8 537 30.4
SHI27908 Sapria himalayana HOM05D004539 ORTHO05D005482 5.4e-32 143.3 298 37.6
CBR_g23809 Chara braunii HOM05D004539 ORTHO05D005482 3.0e-30 137.5 550 28.7
AagrBONN_evm.TU.Sc2ySwM_344.1857 Anthoceros agrestis HOM05D004539 ORTHO05D005482 3.6e-28 130.6 555 28.6
FAN06G2453 Fragaria x ananassa HOM05D004539 ORTHO05D005482 2.3e-27 127.9 263 40.7
FAN05G0730 Fragaria x ananassa HOM05D000664 ORTHO05D000491 3.4e-26 124.0 111 64.0
FAN01G2597 Fragaria x ananassa HOM05D004539 ORTHO05D005482 4.1e-24 117.1 212 41.5
Zm00001eb328540 Zea mays HOM05D004539 ORTHO05D005482 2.8e-20 104.4 263 35.4
Os07g0634300 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 1.2e-18 99.0 222 37.8
MELO3C004859.2 Cucumis melo HOM05D004539 ORTHO05D005482 5.8e-18 96.7 95 56.8
SMO367G1003 Selaginella moellendorffii HOM05D004539 ORTHO05D005482 1.1e-13 82.4 177 33.9
Potri.002G028100 Populus trichocarpa HOM05D004539 ORTHO05D005482 2.1e-12 78.2 133 44.4
TAR369G0231 Trochodendron aralioides HOM05D004539 ORTHO05D005482 2.8e-12 77.8 101 49.5
MELO3C014949.2 Cucumis melo HOM05D004539 ORTHO05D005482 1.8e-11 75.1 109 43.1
AagrBONN_evm.TU.Sc2ySwM_344.3799 Anthoceros agrestis HOM05D004539 ORTHO05D005482 2.9e-09 67.8 423 26.7
MELO3C034665.2 Cucumis melo HOM05D004539 ORTHO05D005482 8.4e-09 66.2 156 35.3
Rhsim06G0017000 Rhododendron simsii HOM05D004539 ORTHO05D005482 1.1e-08 65.9 161 32.9
Rhsim06G0016800 Rhododendron simsii HOM05D004539 ORTHO05D005482 2.4e-08 64.7 147 36.1
PRCOL_00001157 Prasinoderma coloniale HOM05D004539 ORTHO05D005482 5.4e-08 63.5 388 22.7
BcaB05g23177 Brassica carinata HOM05D004539 ORTHO05D005482 7.8e-07 59.7 121 40.5
AagrBONN_evm.TU.Sc2ySwM_344.1880 Anthoceros agrestis HOM05D004539 ORTHO05D005482 1.7e-06 58.5 248 28.2


User provided reference genes

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