Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G3044 Papaver somniferum HOM05D006685 ORTHO05D008244 0.0e+00 1391.3 684 100.0
TAR376G1120 Trochodendron aralioides HOM05D006685 ORTHO05D008244 1.3e-166 590.9 722 47.2
Aqoxy6G00915 Aquilegia oxysepala HOM05D006685 ORTHO05D008244 4.0e-160 569.3 683 47.6
QL06p043714 Quercus lobata HOM05D006685 ORTHO05D008244 6.6e-139 498.8 710 41.7
Cfa004216 Carpinus fangiana HOM05D006685 ORTHO05D008244 4.7e-137 492.7 698 42.6
Nn5g29383 Nelumbo nucifera HOM05D006685 ORTHO05D008244 2.0e-135 487.3 571 47.1
RcHm_v2.0_Chr2g0103811 Rosa chinensis HOM05D006685 ORTHO05D008244 1.2e-129 468.0 692 40.8
FAN28G0684 Fragaria x ananassa HOM05D006685 ORTHO05D008244 8.0e-129 465.3 685 40.6
CSS0018173 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 1.4e-128 464.5 673 41.2
FvH4_1g14850 Fragaria vesca HOM05D006685 ORTHO05D008244 1.8e-128 464.2 685 41.2
Dinv26751 Davidia involucrata HOM05D006685 ORTHO05D008244 2.3e-128 463.8 696 39.5
Actinidia36520 Actinidia chinensis HOM05D006685 ORTHO05D008244 4.4e-127 459.5 710 39.3
FAN26G3106 Fragaria x ananassa HOM05D006685 ORTHO05D008244 4.9e-126 456.1 718 39.6
FAN28G1646 Fragaria x ananassa HOM05D006685 ORTHO05D008244 2.4e-125 453.8 670 40.7
Duzib187G0300 Durio zibethinus HOM05D006685 ORTHO05D008244 3.2e-125 453.4 671 39.0
Potri.005G133500 Populus trichocarpa HOM05D006685 ORTHO05D008244 3.5e-124 449.9 698 39.3
CANSAT01G2373 Cannabis sativa HOM05D006685 ORTHO05D008244 5.0e-123 446.0 694 39.3
Thecc.01G048300 Theobroma cacao HOM05D006685 ORTHO05D008244 7.3e-122 442.2 679 39.3
FAN23G0082 Fragaria x ananassa HOM05D006685 ORTHO05D008244 1.2e-121 441.4 663 40.1
Manes.13G130000 Manihot esculenta HOM05D006685 ORTHO05D008244 8.1e-121 438.7 696 39.1
Atru.chr3.446 Acer truncatum HOM05D006685 ORTHO05D008244 1.8e-120 437.6 713 37.3
Hma1.2p1_0546F.1_g176210 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 4.0e-120 436.4 609 40.7
RcHm_v2.0_Chr1g0329901 Rosa chinensis HOM05D006685 ORTHO05D008244 4.9e-118 429.5 696 38.4
CiPaw.02G011900 Carya illinoinensis HOM05D006685 ORTHO05D008244 6.4e-118 429.1 696 38.5
MBI16_g19900_MAGBIO Magnolia biondii HOM05D006685 ORTHO05D008244 1.9e-117 427.6 694 40.2
MD15G1276100 Malus domestica HOM05D006685 ORTHO05D008244 1.6e-116 424.5 716 38.3
Gohir.A12G068800 Gossypium hirsutum HOM05D006685 ORTHO05D008244 7.8e-116 422.2 673 40.4
Lj4g0023849 Lotus japonicus HOM05D006685 ORTHO05D008244 1.1e-114 418.3 687 37.6
Gorai.008G072600 Gossypium raimondii HOM05D006685 ORTHO05D008244 4.3e-114 416.4 675 39.7
Gohir.D12G090400 Gossypium hirsutum HOM05D006685 ORTHO05D008244 9.5e-114 415.2 675 39.6
TPR.G30340 Trifolium pratense HOM05D006685 ORTHO05D008244 6.2e-113 412.5 679 39.6
Lj7A20T60 Lonicera japonica HOM05D006685 ORTHO05D008244 2.3e-112 410.6 607 38.6
Medtr8g079100 Medicago truncatula HOM05D006685 ORTHO05D008244 3.1e-112 410.2 692 37.1
Sabra05G0107200 Salix brachista HOM05D006685 ORTHO05D008244 2.6e-111 407.1 689 37.7
Glyma.02G062800 Glycine max HOM05D006685 ORTHO05D008244 3.8e-110 403.3 686 38.0
Psat4g089520 Pisum sativum HOM05D006685 ORTHO05D008244 3.8e-110 403.3 684 37.9
Hund16306 Selenicereus undatus HOM05D006685 ORTHO05D008244 3.2e-109 400.2 682 37.0
Lalb_Chr16g0388451 Lupinus albus HOM05D006685 ORTHO05D008244 3.5e-108 396.7 678 37.0
COL.COLO4_11329 Corchorus olitorius HOM05D006685 ORTHO05D008244 7.8e-108 395.6 674 38.4
Prupe.7G141900 Prunus persica HOM05D006685 ORTHO05D008244 1.0e-107 395.2 684 37.9
vmacro05297 Vaccinium macrocarpon HOM05D006685 ORTHO05D008244 8.6e-107 392.1 662 37.6
DCAR_025691 Daucus carota HOM05D006685 ORTHO05D008244 2.5e-106 390.6 666 36.9
Phvul.003G248400 Phaseolus vulgaris HOM05D006685 ORTHO05D008244 4.7e-105 386.3 685 35.9
VMungo0251G1647 Vigna mungo HOM05D006685 ORTHO05D008244 4.7e-105 386.3 679 36.5
Cc07_g05580 Coffea canephora HOM05D006685 ORTHO05D008244 2.0e-103 380.9 696 35.5
Nitab4.5_0001014g0040 Nicotiana tabacum HOM05D006685 ORTHO05D008244 2.0e-103 380.9 679 35.2
CARHR159940 Cardamine hirsuta HOM05D006685 ORTHO05D008244 3.4e-103 380.2 661 36.3
Sopen02g034940 Solanum pennellii HOM05D006685 ORTHO05D008244 9.9e-103 378.6 685 34.3
PGSC0003DMG402010073 Solanum tuberosum HOM05D006685 ORTHO05D008244 7.8e-100 369.0 679 34.5
Migut.H00483 Erythranthe guttata HOM05D006685 ORTHO05D008244 1.0e-99 368.6 687 35.4
HanXRQChr12g0378291 Helianthus annuus HOM05D006685 ORTHO05D008244 1.1e-98 365.2 675 36.4
Sed0001332 Sechium edule HOM05D006685 ORTHO05D008244 9.6e-98 362.1 691 34.9
Sc03g0001280 Simmondsia chinensis HOM05D006685 ORTHO05D008244 3.6e-97 360.1 697 34.1
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 6.2e-97 359.4 666 36.0
ATR0733G107 Amborella trichopoda HOM05D006685 ORTHO05D008244 8.1e-97 359.0 720 34.6
CAN.G836.36 Capsicum annuum HOM05D006685 ORTHO05D008244 1.1e-96 358.6 680 34.3
Nitab4.5_0000108g0340 Nicotiana tabacum HOM05D006685 ORTHO05D008244 1.1e-96 358.6 695 34.5
AT3G50430 Arabidopsis thaliana HOM05D006685 ORTHO05D008244 5.3e-96 356.3 667 35.7
Sp5g11730 Schrenkiella parvula HOM05D006685 ORTHO05D008244 3.4e-95 353.6 666 35.4
Hma1.2p1_0546F.1_g176200 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 7.6e-95 352.4 555 38.7
PGR119G2375 Punica granatum HOM05D006685 ORTHO05D008244 9.9e-95 352.1 706 34.4
Eucgr.I01015 Eucalyptus grandis HOM05D006685 ORTHO05D008244 1.3e-94 351.7 593 37.4
Thhalv10010194m.g Eutrema salsugineum HOM05D006685 ORTHO05D008244 2.4e-93 347.4 669 34.5
AL5G30586 Arabidopsis lyrata HOM05D006685 ORTHO05D008244 4.2e-93 346.7 674 34.9
Solyc02g090260.3 Solanum lycopersicum HOM05D006685 ORTHO05D008244 5.4e-93 346.3 678 32.9
BolC1t02922H Brassica oleracea HOM05D006685 ORTHO05D008244 7.9e-92 342.4 663 34.8
Ciclev10025347m.g Citrus clementina HOM05D006685 ORTHO05D008244 8.7e-91 339.0 533 38.8
BcaB05g23218 Brassica carinata HOM05D006685 ORTHO05D008244 1.9e-90 337.8 650 34.3
BraA01t02325Z Brassica rapa HOM05D006685 ORTHO05D008244 1.9e-90 337.8 653 34.3
ClCG02G012840 Citrullus lanatus HOM05D006685 ORTHO05D008244 4.3e-90 336.7 712 34.7
C01p29820 Brassica napus HOM05D006685 ORTHO05D008244 4.8e-89 333.2 664 34.3
Lj7A17G42 Lonicera japonica HOM05D006685 ORTHO05D008244 1.8e-88 331.3 547 36.2
CsaV3_2G016900 Cucumis sativus L. HOM05D006685 ORTHO05D008244 5.3e-88 329.7 688 34.2
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 6.9e-88 329.3 568 36.6
A01p24130 Brassica napus HOM05D006685 ORTHO05D008244 1.2e-87 328.6 647 34.0
Aa31LG4G18660 Aethionema arabicum HOM05D006685 ORTHO05D008244 2.2e-86 324.3 696 33.3
Ca_22212_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 8.4e-86 322.4 678 33.2
Peaxi162Scf00993g00018 Petunia axillaris HOM05D006685 ORTHO05D008244 3.2e-85 320.5 612 33.2
Carub.0005s1677 Capsella rubella HOM05D006685 ORTHO05D008244 1.2e-84 318.5 512 37.3
Zm00001eb209640 Zea mays HOM05D006685 ORTHO05D008244 3.0e-83 313.9 700 34.4
ECA246G1174 Erigeron canadensis HOM05D006685 ORTHO05D008244 2.5e-82 310.8 690 33.8
Zm00001eb209650 Zea mays HOM05D006685 ORTHO05D008244 2.5e-82 310.8 700 34.3
Lsat_1_v5_gn_3_92360 Lactuca sativa HOM05D006685 ORTHO05D008244 5.6e-82 309.7 677 33.7
Ca_22230_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 7.4e-82 309.3 667 32.7
THA.LOC104821263 Tarenaya hassleriana HOM05D006685 ORTHO05D008244 1.1e-80 305.4 584 34.9
SGA_v2.0_scaffold204G41611 Striga asiatica HOM05D006685 ORTHO05D008244 5.3e-80 303.1 625 33.1
HPP92_017771 Vanilla planifolia HOM05D006685 ORTHO05D008244 3.4e-79 300.4 635 33.7
AUR62003829 Chenopodium quinoa HOM05D006685 ORTHO05D008244 2.2e-78 297.7 433 42.7
Os07g0120700 Oryza sativa ssp. japonica HOM05D006685 ORTHO05D008244 1.1e-77 295.4 704 31.7
MELO3C020890.2 Cucumis melo HOM05D006685 ORTHO05D008244 2.8e-73 280.8 738 31.0
PGR044G2727 Punica granatum HOM05D006685 ORTHO05D008244 3.7e-73 280.4 439 39.4
BcaC09g50030 Brassica carinata HOM05D006685 ORTHO05D008244 7.6e-71 272.7 548 33.6
Oeu003945.1 Olea europaea HOM05D006685 ORTHO05D008244 9.7e-66 255.8 365 40.0
AUR62001974 Chenopodium quinoa HOM05D006685 ORTHO05D008244 2.4e-64 251.1 658 31.6
Haze_15195 Corylus avellana HOM05D006685 ORTHO05D008244 3.1e-64 250.8 720 29.4
Cpa.g.sc76.25 Carica papaya HOM05D006685 ORTHO05D008244 9.1e-64 249.2 440 35.2
arahy.Tifrunner.gnm1.ann1.5EE2XW Arachis hypogaea HOM05D006685 ORTHO05D008244 8.8e-51 206.1 395 35.2
unitig_749.g14219 Utricularia gibba HOM05D006685 ORTHO05D008244 1.3e-49 202.2 399 37.1
CSS0022206 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 3.5e-47 194.1 323 36.8
MD06G1092200 Malus domestica HOM05D006685 ORTHO05D008244 1.2e-39 169.1 282 39.4
CDE07G0460 Ceratophyllum demersum HOM05D006685 ORTHO05D008244 3.5e-39 167.5 381 33.3
FAN28G0437 Fragaria x ananassa HOM05D006685 ORTHO05D008244 3.6e-36 157.5 201 45.8
Pp3c3_30590 Physcomitrium patens HOM05D006685 ORTHO05D008244 5.4e-24 117.1 673 23.2
GSVIVG01002723001 Vitis vinifera HOM05D006685 ORTHO05D008244 7.8e-23 113.2 172 40.7
Mapoly0122s0032 Marchantia polymorpha HOM05D006685 ORTHO05D008244 2.9e-22 111.3 554 25.1
GSVIVG01036190001 Vitis vinifera HOM05D006685 ORTHO05D008244 3.6e-20 104.4 182 39.6
ATR0733G174 Amborella trichopoda HOM05D006685 ORTHO05D008244 6.1e-20 103.6 142 40.8
SEGI_02281 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 8.0e-20 103.2 359 28.1
CDE07G1850 Ceratophyllum demersum HOM05D006685 ORTHO05D008244 3.7e-17 94.4 221 30.8
SEGI_38886 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 5.4e-16 90.5 194 34.0
Prupe.5G239300 Prunus persica HOM05D006685 ORTHO05D008244 1.9e-13 82.0 98 49.0
AagrBONN_evm.TU.Sc2ySwM_228.383 Anthoceros agrestis HOM05D039764 ORTHO05D031174 3.3e-13 81.3 309 27.5
FAN05G3710 Fragaria x ananassa HOM05D006685 ORTHO05D008244 5.6e-13 80.5 67 56.7
FAN08G2647 Fragaria x ananassa HOM05D006685 ORTHO05D008244 5.6e-13 80.5 67 56.7
SEGI_35306 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 1.2e-12 79.3 133 36.8
CBR_g36358 Chara braunii HOM05D005614 ORTHO05D006759 6.4e-09 67.0 56 53.6
unitig_78.g29629 Utricularia gibba HOM05D006685 ORTHO05D008244 2.7e-07 61.6 117 37.6
MD06G1092300 Malus domestica HOM05D006685 ORTHO05D008244 1.0e-06 59.7 47 57.4


User provided reference genes

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