Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G2962 Papaver somniferum HOM05D004640 ORTHO05D005489 0.0e+00 1315.8 701 100.0
PSO675G0104 Papaver somniferum HOM05D004640 ORTHO05D005489 0.0e+00 1248.8 699 95.4
Aqoxy1G01535 Aquilegia oxysepala HOM05D004640 ORTHO05D005489 1.8e-237 826.2 678 70.5
CSS0031954 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 2.4e-229 799.3 683 67.6
CSS0010715 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 3.1e-229 798.9 684 67.4
Glyma.15G045900 Glycine max HOM05D004640 ORTHO05D005489 1.3e-222 776.9 674 65.3
Actinidia19942 Actinidia chinensis HOM05D004640 ORTHO05D005489 2.2e-222 776.2 691 66.0
Hma1.2p1_0296F.1_g116830 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 3.7e-222 775.4 688 64.5
Thecc.02G088200 Theobroma cacao HOM05D004640 ORTHO05D005489 4.9e-222 775.0 687 64.3
Gohir.A04G121200 Gossypium hirsutum HOM05D004640 ORTHO05D005489 4.1e-221 771.9 681 63.6
Duzib132G0532 Durio zibethinus HOM05D004640 ORTHO05D005489 5.4e-221 771.5 684 62.9
CiPaw.05G048700 Carya illinoinensis HOM05D004640 ORTHO05D005489 1.6e-220 770.0 676 65.5
Hund21765 Selenicereus undatus HOM05D004640 ORTHO05D005489 1.6e-220 770.0 694 64.6
Glyma.08G187100 Glycine max HOM05D004640 ORTHO05D005489 2.0e-220 769.6 680 64.6
Atru.chr6.619 Acer truncatum HOM05D004640 ORTHO05D005489 7.8e-220 767.7 692 64.5
Atru.chr6.621_Atru.chr6.622 Acer truncatum HOM05D004640 ORTHO05D005489 7.8e-220 767.7 692 64.5
QL02p099200 Quercus lobata HOM05D004640 ORTHO05D005489 2.9e-219 765.8 679 66.0
VMungo0540G1095 Vigna mungo HOM05D004640 ORTHO05D005489 5.0e-219 765.0 678 64.6
Dinv24776 Davidia involucrata HOM05D004640 ORTHO05D005489 6.6e-219 764.6 561 75.4
Eucgr.I02737 Eucalyptus grandis HOM05D004640 ORTHO05D005489 2.5e-218 762.7 687 65.5
TPR.G2079 Trifolium pratense HOM05D004640 ORTHO05D005489 3.3e-218 762.3 676 65.2
Gorai.012G151900 Gossypium raimondii HOM05D004640 ORTHO05D005489 9.5e-218 760.8 708 58.9
Manes.10G125900 Manihot esculenta HOM05D004640 ORTHO05D005489 2.1e-217 759.6 678 65.3
TWI14G1252 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 2.1e-217 759.6 683 63.3
Rhsim05G0203300 Rhododendron simsii HOM05D004640 ORTHO05D005489 1.8e-216 756.5 681 65.2
PGR142G2697 Punica granatum HOM05D004640 ORTHO05D005489 8.9e-216 754.2 678 64.6
Sc09g0001940 Simmondsia chinensis HOM05D004640 ORTHO05D005489 2.6e-215 752.7 683 64.6
Medtr2g006880 Medicago truncatula HOM05D004640 ORTHO05D005489 1.9e-213 746.5 675 65.6
TWI59G0201 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 1.0e-211 740.7 649 64.9
Cc09_g07620 Coffea canephora HOM05D004640 ORTHO05D005489 3.0e-211 739.2 694 63.1
EL10Ac4g09724 Beta vulgaris HOM05D004640 ORTHO05D005489 3.9e-211 738.8 692 62.9
Gorai.002G006000 Gossypium raimondii HOM05D004640 ORTHO05D005489 3.9e-211 738.8 691 61.5
Lsat_1_v5_gn_5_71601 Lactuca sativa HOM05D004640 ORTHO05D005489 1.9e-210 736.5 688 61.8
Potri.001G211700 Populus trichocarpa HOM05D004640 ORTHO05D005489 7.3e-210 734.6 702 62.8
RcHm_v2.0_Chr1g0332251 Rosa chinensis HOM05D004640 ORTHO05D005489 7.3e-210 734.6 679 63.6
CsaV3_3G019120 Cucumis sativus L. HOM05D004640 ORTHO05D005489 1.6e-209 733.4 680 63.8
Ciclev10000505m.g Citrus clementina HOM05D004640 ORTHO05D005489 1.1e-208 730.7 679 63.3
AUR62006957 Chenopodium quinoa HOM05D004640 ORTHO05D005489 5.2e-208 728.4 688 62.8
Phvul.006G215300 Phaseolus vulgaris HOM05D004640 ORTHO05D005489 6.8e-208 728.0 555 71.0
FvH4_5g29191 Fragaria vesca HOM05D004640 ORTHO05D005489 3.4e-207 725.7 678 63.7
FAN08G0534 Fragaria x ananassa HOM05D004640 ORTHO05D005489 4.4e-207 725.3 685 63.8
CANSAT11G0894 Cannabis sativa HOM05D004640 ORTHO05D005489 9.8e-207 724.2 679 64.1
arahy.Tifrunner.gnm1.ann1.Y1PSG0 Arachis hypogaea HOM05D004640 ORTHO05D005489 1.3e-206 723.8 737 59.4
Nn7g37934 Nelumbo nucifera HOM05D004640 ORTHO05D005489 1.4e-205 720.3 526 75.5
Gohir.D01G005100 Gossypium hirsutum HOM05D004640 ORTHO05D005489 3.2e-205 719.2 684 60.7
Sabra01G0163500 Salix brachista HOM05D004640 ORTHO05D005489 1.2e-204 717.2 682 63.8
MSTRG.23232 Avicennia marina HOM05D004640 ORTHO05D005489 2.1e-204 716.5 689 63.0
Lj6g0021650 Lotus japonicus HOM05D004640 ORTHO05D005489 4.6e-204 715.3 682 62.5
Migut.H02548 Erythranthe guttata HOM05D004640 ORTHO05D005489 1.5e-202 710.3 681 63.0
COL.COLO4_11782 Corchorus olitorius HOM05D004640 ORTHO05D005489 2.5e-202 709.5 631 64.5
Lalb_Chr20g0123511 Lupinus albus HOM05D004640 ORTHO05D005489 4.3e-202 708.8 613 66.2
arahy.Tifrunner.gnm1.ann1.8G9BB5 Arachis hypogaea HOM05D004640 ORTHO05D005489 6.2e-201 704.9 681 60.8
AUR62000605 Chenopodium quinoa HOM05D004640 ORTHO05D005489 5.8e-199 698.4 693 60.6
Prupe.1G004500 Prunus persica HOM05D004640 ORTHO05D005489 2.2e-198 696.4 677 62.3
GSVIVG01022882001 Vitis vinifera HOM05D004640 ORTHO05D005489 2.2e-198 696.4 559 70.5
vmacro12737 Vaccinium macrocarpon HOM05D004640 ORTHO05D005489 2.9e-198 696.0 800 55.2
MELO3C019462.2 Cucumis melo HOM05D004640 ORTHO05D005489 1.1e-197 694.1 663 63.0
Solyc04g026280.2 Solanum lycopersicum HOM05D004640 ORTHO05D005489 2.7e-196 689.5 657 62.6
Gohir.A01G005001 Gossypium hirsutum HOM05D004640 ORTHO05D005489 3.0e-195 686.0 651 60.8
ECA233G0813 Erigeron canadensis HOM05D004640 ORTHO05D005489 1.5e-194 683.7 656 61.1
Sed0025782 Sechium edule HOM05D004640 ORTHO05D005489 1.5e-194 683.7 556 70.5
Sopen04g014430 Solanum pennellii HOM05D004640 ORTHO05D005489 8.1e-193 677.9 662 61.6
Carub.0002s0421 Capsella rubella HOM05D004640 ORTHO05D005489 3.1e-192 676.0 690 59.1
FAN13G0955 Fragaria x ananassa HOM05D004640 ORTHO05D005489 2.6e-191 672.9 583 67.1
MD08G1235100 Malus domestica HOM05D004640 ORTHO05D005489 4.4e-191 672.2 680 61.2
MD15G1426300 Malus domestica HOM05D004640 ORTHO05D005489 3.8e-190 669.1 680 61.0
Psat1g221200 Pisum sativum HOM05D004640 ORTHO05D005489 8.4e-190 667.9 625 63.0
Thhalv10023347m.g Eutrema salsugineum HOM05D004640 ORTHO05D005489 3.2e-189 666.0 676 59.9
Ca_00068_v3 Cicer arietinum L. HOM05D004640 ORTHO05D005489 2.1e-188 663.3 687 56.3
TWI23G1121 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 7.8e-188 661.4 663 59.7
AL2G15460 Arabidopsis lyrata HOM05D004640 ORTHO05D005489 3.0e-187 659.4 677 58.5
HanXRQChr15g0469061 Helianthus annuus HOM05D004640 ORTHO05D005489 3.3e-186 656.0 668 59.0
Actinidia36578 Actinidia chinensis HOM05D004640 ORTHO05D005489 3.6e-185 652.5 545 67.7
BcaC02g10600 Brassica carinata HOM05D004640 ORTHO05D005489 8.1e-185 651.4 683 57.5
C04p25650 Brassica napus HOM05D004640 ORTHO05D005489 8.1e-185 651.4 683 57.5
C05p50900 Brassica napus HOM05D004640 ORTHO05D005489 8.1e-185 651.4 683 57.5
Os03g0659900 Oryza sativa ssp. japonica HOM05D004640 ORTHO05D005489 6.9e-184 648.3 679 58.5
THA.LOC104809619 Tarenaya hassleriana HOM05D004640 ORTHO05D005489 1.5e-183 647.1 685 57.7
Sp2g03520 Schrenkiella parvula HOM05D004640 ORTHO05D005489 2.0e-183 646.7 684 57.3
BcaC06g31828 Brassica carinata HOM05D004640 ORTHO05D005489 2.9e-182 642.9 682 56.6
BcaB04g20302 Brassica carinata HOM05D004640 ORTHO05D005489 4.9e-182 642.1 679 57.0
Nitab4.5_0001785g0050 Nicotiana tabacum HOM05D004640 ORTHO05D005489 4.9e-182 642.1 750 52.1
AT1G60995 Arabidopsis thaliana HOM05D004640 ORTHO05D005489 6.4e-182 641.7 677 57.9
A01p29810 Brassica napus HOM05D004640 ORTHO05D005489 6.4e-182 641.7 673 57.7
BraA01t03109Z Brassica rapa HOM05D004640 ORTHO05D005489 6.4e-182 641.7 673 57.7
MBI01_g44452_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 2.7e-180 636.3 681 56.1
C01p37670 Brassica napus HOM05D004640 ORTHO05D005489 7.8e-180 634.8 673 57.7
BolC1t03731H Brassica oleracea HOM05D004640 ORTHO05D005489 7.8e-180 634.8 673 57.7
ClCG05G009610 Citrullus lanatus HOM05D004640 ORTHO05D005489 1.9e-178 630.2 680 55.4
Lj4C822G11 Lonicera japonica HOM05D004640 ORTHO05D005489 4.5e-175 619.0 498 70.1
HPP92_017742 Vanilla planifolia HOM05D004640 ORTHO05D005489 2.4e-173 613.2 684 56.6
SGA_v2.0_scaffold51G18853 Striga asiatica HOM05D004640 ORTHO05D005489 1.4e-168 597.4 694 55.0
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 1.1e-165 587.8 637 57.3
Oeu032223.3 Olea europaea HOM05D000396 ORTHO05D000116 5.5e-165 585.5 462 71.0
FAN04G1948 Fragaria x ananassa HOM05D004640 ORTHO05D005489 7.9e-164 581.6 621 54.8
unitig_0.g396 Utricularia gibba HOM05D004640 ORTHO05D005489 1.6e-161 573.9 680 54.7
DCAR_021303 Daucus carota HOM05D004640 ORTHO05D005489 6.9e-160 568.5 685 50.4
Duzib052G0332 Durio zibethinus HOM05D004640 ORTHO05D005489 2.2e-158 563.5 702 52.3
Peaxi162Scf00577g00411 Petunia axillaris HOM05D004640 ORTHO05D005489 5.5e-157 558.9 678 50.1
BcaC09g49343 Brassica carinata HOM05D004640 ORTHO05D005489 3.5e-156 556.2 621 55.7
ATR0763G087 Amborella trichopoda HOM05D004640 ORTHO05D005489 8.2e-153 545.0 676 51.9
BolC4t24244H Brassica oleracea HOM05D004640 ORTHO05D005489 5.0e-150 535.8 469 61.2
FAN18G0226 Fragaria x ananassa HOM05D004640 ORTHO05D005489 8.5e-150 535.0 585 54.7
TAR381G0517 Trochodendron aralioides HOM05D004640 ORTHO05D005489 2.1e-148 530.4 724 47.7
Zm00001eb218090 Zea mays HOM05D004640 ORTHO05D005489 2.6e-138 496.9 439 67.2
Mapoly0014s0041 Marchantia polymorpha HOM05D004640 ORTHO05D005489 1.7e-134 484.2 751 44.2
Oeu046366.1 Olea europaea HOM05D004640 ORTHO05D005489 7.2e-133 478.8 675 49.3
Gohir.D04G163900 Gossypium hirsutum HOM05D004640 ORTHO05D005489 8.0e-132 475.3 417 68.3
Pp3c3_37820 Physcomitrium patens HOM05D004640 ORTHO05D005489 1.6e-119 434.5 560 48.0
Nitab4.5_0004809g0070 Nicotiana tabacum HOM05D004640 ORTHO05D005489 2.7e-119 433.7 617 45.2
Hund07189 Selenicereus undatus HOM05D004640 ORTHO05D005489 1.2e-116 424.9 690 42.6
AagrBONN_evm.TU.Sc2ySwM_344.1404 Anthoceros agrestis HOM05D004640 ORTHO05D005489 3.6e-116 423.3 553 47.6
Ah.06g188240 Amaranthus hybridus HOM05D004640 ORTHO05D005489 2.0e-114 417.5 508 53.7
SMO116G0341 Selaginella moellendorffii HOM05D004640 ORTHO05D005489 2.9e-110 403.7 684 43.0
CBR_g54224 Chara braunii HOM05D004640 ORTHO05D005489 2.0e-98 364.4 550 45.3
CAN.G124.21 Capsicum annuum HOM05D004640 ORTHO05D005489 1.2e-90 338.6 322 69.6
CDE12G0675 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 2.8e-76 290.8 477 40.9
Haze_01729 Corylus avellana HOM05D004640 ORTHO05D005489 1.4e-75 288.5 284 69.0
BraSC39t46176Z Brassica rapa HOM05D004640 ORTHO05D005489 1.1e-69 268.9 320 55.3
TAR625G1136 Trochodendron aralioides HOM05D004640 ORTHO05D005489 8.1e-68 262.7 180 85.6
CDE12G0207 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 8.7e-62 242.7 336 42.6
Manes.07G017650 Manihot esculenta HOM05D004640 ORTHO05D005489 4.9e-57 226.9 165 86.1
CDE12G0153 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.9e-53 214.9 288 43.1
CDE12G0158 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 5.6e-53 213.4 197 74.1
CDE12G0722 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.8e-51 208.4 309 48.9
Gohir.D04G163933 Gossypium hirsutum HOM05D004640 ORTHO05D005489 9.0e-51 206.1 200 52.5
BNapus_Darmor_BZH_scaffold_271p00030 Brassica napus HOM05D004640 ORTHO05D005489 1.0e-49 202.6 324 40.4
MBI01_g00654_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 2.3e-46 191.4 226 47.8
BNapus_Darmor_BZH_scaffold_271p00020 Brassica napus HOM05D004640 ORTHO05D005489 4.8e-44 183.7 148 66.9
RcHm_v2.0_Chr7g0230911 Rosa chinensis HOM05D004640 ORTHO05D005489 3.4e-42 177.6 103 93.2
EL10Ac4g09783 Beta vulgaris HOM05D004640 ORTHO05D005489 1.0e-41 176.0 229 58.1
EL10Ac4g09779 Beta vulgaris HOM05D004640 ORTHO05D005489 3.0e-38 164.5 288 43.8
Haze_01727 Corylus avellana HOM05D004640 ORTHO05D005489 2.9e-33 147.9 83 83.1
HPP92_017709 Vanilla planifolia HOM05D004640 ORTHO05D005489 2.1e-31 141.7 252 39.7
Haze_01724 Corylus avellana HOM05D004640 ORTHO05D005489 1.8e-30 138.7 167 47.3
arahy.Tifrunner.gnm1.ann1.2GJ950 Arachis hypogaea HOM05D004640 ORTHO05D005489 1.9e-24 118.6 89 77.5
TAR625G0944 Trochodendron aralioides HOM05D004640 ORTHO05D005489 3.2e-24 117.9 126 50.0
PRCOL_00005332 Prasinoderma coloniale HOM05D004640 ORTHO05D005489 1.4e-19 102.4 326 27.6
Haze_01804 Corylus avellana HOM05D004640 ORTHO05D005489 1.0e-17 96.3 59 78.0
SalBow8G0731 Salvia bowleyana HOM05D004640 ORTHO05D005489 6.1e-15 87.0 51 80.4
arahy.Tifrunner.gnm1.ann1.5KT91U Arachis hypogaea HOM05D004640 ORTHO05D005489 4.0e-14 84.3 64 57.8
Zm00001eb114350 Zea mays HOM05D004640 ORTHO05D005489 5.3e-11 73.9 53 60.4
SEGI_15466 Sequoiadendron giganteum HOM05D004640 ORTHO05D005489 1.6e-10 72.4 152 30.9
Haze_01802 Corylus avellana HOM05D004640 ORTHO05D005489 5.9e-10 70.5 98 42.9
arahy.Tifrunner.gnm1.ann1.FS0M29 Arachis hypogaea HOM05D001673 ORTHO05D012548 3.8e-09 67.8 56 51.8
A03p68870 Brassica napus HOM05D004640 ORTHO05D005489 1.5e-08 65.9 91 31.9
BraSC39t46178Z Brassica rapa HOM05D004640 ORTHO05D005489 1.5e-08 65.9 91 31.9
RcHm_v2.0_Chr6g0266101 Rosa chinensis HOM05D004640 ORTHO05D005489 6.1e-07 60.5 32 93.8
Hma1.2p1_0340F.1_g130025 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 1.0e-06 59.7 68 51.5
Hma1.2p1_2041F.1_g312210 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 1.0e-06 59.7 68 51.5
RcHm_v2.0_Chr7g0219231 Rosa chinensis HOM05D003652 ORTHO05D005489 1.0e-06 59.7 36 86.1
arahy.Tifrunner.gnm1.ann1.TB7XPK Arachis hypogaea HOM05D004640 ORTHO05D005489 2.3e-06 58.5 34 88.2
TAR625G0012 Trochodendron aralioides HOM05D004640 ORTHO05D005489 2.3e-06 58.5 67 58.2


User provided reference genes

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