Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G2841 Papaver somniferum HOM05D005248 ORTHO05D006409 6.1e-128 460.7 212 100.0
PSO782G4423 Papaver somniferum HOM05D005248 ORTHO05D006409 1.1e-52 210.7 130 79.2
PSO063G1686 Papaver somniferum HOM05D005248 ORTHO05D006409 3.2e-52 209.1 130 78.5
CAN.G1008.49 Capsicum annuum HOM05D005248 ORTHO05D006409 1.4e-47 193.7 128 72.7
COL.COLO4_37271 Corchorus olitorius HOM05D005248 ORTHO05D006409 1.8e-47 193.4 151 62.9
Duzib205G1954 Durio zibethinus HOM05D005248 ORTHO05D006409 1.8e-47 193.4 151 62.9
PGSC0003DMG400014171 Solanum tuberosum HOM05D005248 ORTHO05D006409 3.1e-47 192.6 142 63.4
Cpa.g.sc13.186 Carica papaya HOM05D005248 ORTHO05D006409 5.3e-47 191.8 128 71.1
Sopen03g037010 Solanum pennellii HOM05D005248 ORTHO05D006409 5.3e-47 191.8 142 66.9
Nitab4.5_0000976g0180 Nicotiana tabacum HOM05D005248 ORTHO05D006409 6.9e-47 191.4 128 72.7
Thecc.03G142000 Theobroma cacao HOM05D005248 ORTHO05D006409 1.2e-46 190.7 151 61.6
Dinv13708 Davidia involucrata HOM05D005248 ORTHO05D006409 3.4e-46 189.1 128 72.7
Sc14g0003150 Simmondsia chinensis HOM05D005248 ORTHO05D006409 3.4e-46 189.1 128 72.7
SalBow1G4990 Salvia bowleyana HOM05D005248 ORTHO05D006409 1.0e-45 187.6 113 74.3
TWI39G0330 Tripterygium wilfordii HOM05D005248 ORTHO05D006409 1.0e-45 187.6 141 62.4
Aqoxy5G00839 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 1.3e-45 187.2 153 61.4
Oeu051184.1 Olea europaea HOM05D005248 ORTHO05D006409 1.3e-45 187.2 142 62.7
GSVIVG01005682001 Vitis vinifera HOM05D005248 ORTHO05D006409 1.3e-45 187.2 128 70.3
Cfa018696 Carpinus fangiana HOM05D005248 ORTHO05D006409 1.7e-45 186.8 128 69.5
AT5G51040 Arabidopsis thaliana HOM05D005248 ORTHO05D006409 2.2e-45 186.4 128 71.1
Carub.0008s1104 Capsella rubella HOM05D005248 ORTHO05D006409 2.9e-45 186.0 128 70.3
MSTRG.22815 Avicennia marina HOM05D005248 ORTHO05D006409 3.8e-45 185.7 128 68.8
Oeu017204.1 Olea europaea HOM05D005248 ORTHO05D006409 5.0e-45 185.3 128 70.3
Aqoxy4G00470 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 6.5e-45 184.9 139 65.5
Hund02516 Selenicereus undatus HOM05D005248 ORTHO05D006409 6.5e-45 184.9 113 73.5
SGA_v2.0_scaffold37G14670 Striga asiatica HOM05D005248 ORTHO05D006409 8.5e-45 184.5 137 66.4
Glyma.04G202600 Glycine max HOM05D005248 ORTHO05D006409 1.1e-44 184.1 128 65.6
EL10Ac5g11271 Beta vulgaris HOM05D005248 ORTHO05D006409 1.4e-44 183.7 113 72.6
Potri.015G108300 Populus trichocarpa HOM05D005248 ORTHO05D006409 1.4e-44 183.7 113 70.8
Actinidia25510 Actinidia chinensis HOM05D005248 ORTHO05D006409 1.9e-44 183.3 139 65.5
AL8G25260 Arabidopsis lyrata HOM05D005248 ORTHO05D006409 1.9e-44 183.3 128 69.5
Gohir.D07G050600 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.9e-44 183.3 128 69.5
Gorai.001G053700 Gossypium raimondii HOM05D005248 ORTHO05D006409 1.9e-44 183.3 128 69.5
Hma1.2p1_0452F.1_g155900 Hydrangea macrophylla HOM05D005248 ORTHO05D006409 1.9e-44 183.3 137 64.2
Sabra12G0080100 Salix brachista HOM05D005248 ORTHO05D006409 1.9e-44 183.3 113 70.8
SGA_v2.0_scaffold44G16640 Striga asiatica HOM05D005248 ORTHO05D006409 1.9e-44 183.3 137 67.2
Gohir.A07G046300 Gossypium hirsutum HOM05D005248 ORTHO05D006409 2.5e-44 183.0 128 69.5
Hund10025 Selenicereus undatus HOM05D005248 ORTHO05D006409 2.5e-44 183.0 112 71.4
arahy.Tifrunner.gnm1.ann1.1UQX8S Arachis hypogaea HOM05D005248 ORTHO05D006409 3.2e-44 182.6 128 65.6
arahy.Tifrunner.gnm1.ann1.4X1L65 Arachis hypogaea HOM05D005248 ORTHO05D006409 3.2e-44 182.6 128 64.8
CANSAT78G1265 Cannabis sativa HOM05D005248 ORTHO05D006409 3.2e-44 182.6 128 68.8
Manes.14G043700 Manihot esculenta HOM05D005248 ORTHO05D006409 3.2e-44 182.6 130 65.4
TAR371G0926 Trochodendron aralioides HOM05D005248 ORTHO05D006409 3.2e-44 182.6 139 63.3
CARHR257090 Cardamine hirsuta HOM05D005248 ORTHO05D006409 4.2e-44 182.2 128 68.0
THA.LOC104825042 Tarenaya hassleriana HOM05D005248 ORTHO05D006409 4.2e-44 182.2 113 73.5
Lj1g0011989 Lotus japonicus HOM05D005248 ORTHO05D006409 5.5e-44 181.8 128 64.8
Prupe.5G140100 Prunus persica HOM05D005248 ORTHO05D006409 7.2e-44 181.4 113 72.6
BcaC03g14629 Brassica carinata HOM05D005248 ORTHO05D006409 9.4e-44 181.0 128 68.0
Ciclev10032866m.g Citrus clementina HOM05D005248 ORTHO05D006409 9.4e-44 181.0 128 68.8
MD14G1145800 Malus domestica HOM05D005248 ORTHO05D006409 1.2e-43 180.6 113 70.8
QL10p000295 Quercus lobata HOM05D005248 ORTHO05D006409 1.2e-43 180.6 137 63.5
VMungo0251G2692 Vigna mungo HOM05D005248 ORTHO05D006409 1.6e-43 180.3 128 65.6
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 2.1e-43 179.9 113 72.6
BraSC35t45996Z Brassica rapa HOM05D005248 ORTHO05D006409 2.1e-43 179.9 148 62.8
CSS0027803 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 2.1e-43 179.9 139 62.6
CSS0031400 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 2.1e-43 179.9 139 62.6
A02p12520 Brassica napus HOM05D005248 ORTHO05D006409 2.7e-43 179.5 128 68.0
arahy.Tifrunner.gnm1.ann1.JK6BKQ Arachis hypogaea HOM05D005248 ORTHO05D006409 3.6e-43 179.1 128 64.1
AUR62032207 Chenopodium quinoa HOM05D005248 ORTHO05D006409 3.6e-43 179.1 113 69.9
ECA247G0315 Erigeron canadensis HOM05D005248 ORTHO05D000263 3.6e-43 179.1 128 68.0
A10p08030 Brassica napus HOM05D005248 ORTHO05D006409 4.7e-43 178.7 128 68.0
AUR62043379 Chenopodium quinoa HOM05D005248 ORTHO05D006409 6.1e-43 178.3 113 70.8
Eucgr.H01475 Eucalyptus grandis HOM05D005248 ORTHO05D006409 6.1e-43 178.3 113 70.8
Lj9C488G13 Lonicera japonica HOM05D005248 ORTHO05D006409 6.1e-43 178.3 113 69.9
Sp6g13210 Schrenkiella parvula HOM05D005248 ORTHO05D006409 7.9e-43 177.9 128 68.0
Glyma.06G162900 Glycine max HOM05D005248 ORTHO05D006409 1.0e-42 177.6 128 64.8
PGR119G0545 Punica granatum HOM05D005248 ORTHO05D006409 1.0e-42 177.6 113 70.8
Rhsim08G0198900 Rhododendron simsii HOM05D005248 ORTHO05D006409 1.0e-42 177.6 128 65.6
Ah.11g047000 Amaranthus hybridus HOM05D005248 ORTHO05D006409 1.4e-42 177.2 113 69.9
AUR62043864 Chenopodium quinoa HOM05D005248 ORTHO05D006409 1.4e-42 177.2 113 69.9
BcaB05g24022 Brassica carinata HOM05D005248 ORTHO05D006409 1.8e-42 176.8 128 68.0
CDE06G0011 Ceratophyllum demersum HOM05D005248 ORTHO05D006409 1.8e-42 176.8 139 64.0
Cc04_g05750 Coffea canephora HOM05D005248 ORTHO05D006409 2.3e-42 176.4 138 61.6
arahy.Tifrunner.gnm1.ann1.X29WZH Arachis hypogaea HOM05D005248 ORTHO05D006409 3.0e-42 176.0 128 63.3
Psat7g039840 Pisum sativum HOM05D005248 ORTHO05D006409 3.0e-42 176.0 128 65.6
Sed0027310 Sechium edule HOM05D005248 ORTHO05D006409 3.0e-42 176.0 113 69.9
Thhalv10014773m.g Eutrema salsugineum HOM05D005248 ORTHO05D006409 3.9e-42 175.6 128 67.2
FAN04G2277 Fragaria x ananassa HOM05D005248 ORTHO05D006409 3.9e-42 175.6 128 66.4
unitig_61.g26221 Utricularia gibba HOM05D005248 ORTHO05D006409 3.9e-42 175.6 140 62.9
Migut.I00662 Erythranthe guttata HOM05D005248 ORTHO05D006409 5.1e-42 175.3 128 69.5
FAN18G0065 Fragaria x ananassa HOM05D005248 ORTHO05D006409 5.1e-42 175.3 128 66.4
Medtr3g098480 Medicago truncatula HOM05D005248 ORTHO05D006409 5.1e-42 175.3 113 69.9
Phvul.009G158800 Phaseolus vulgaris HOM05D005248 ORTHO05D006409 5.1e-42 175.3 140 60.0
RcHm_v2.0_Chr7g0188501 Rosa chinensis HOM05D005248 ORTHO05D006409 5.1e-42 175.3 128 65.6
HPP92_006440 Vanilla planifolia HOM05D005248 ORTHO05D006409 5.1e-42 175.3 160 54.4
BolC2t08204H Brassica oleracea HOM05D005248 ORTHO05D006409 6.7e-42 174.9 115 71.3
FAN08G1048 Fragaria x ananassa HOM05D005248 ORTHO05D006409 6.7e-42 174.9 128 65.6
Atru.chr6.1938 Acer truncatum HOM05D005248 ORTHO05D006409 8.8e-42 174.5 187 50.8
C09p39650 Brassica napus HOM05D005248 ORTHO05D006409 8.8e-42 174.5 123 68.3
FAN13G2612 Fragaria x ananassa HOM05D005248 ORTHO05D006409 8.8e-42 174.5 128 65.6
Aa31LG3G7530 Aethionema arabicum HOM05D005248 ORTHO05D006409 1.1e-41 174.1 143 63.6
ClCG11G000550 Citrullus lanatus HOM05D005248 ORTHO05D006409 1.1e-41 174.1 113 69.0
DCAR_025638 Daucus carota HOM05D005248 ORTHO05D006409 1.1e-41 174.1 128 61.7
FvH4_5g09730 Fragaria vesca HOM05D005248 ORTHO05D006409 1.1e-41 174.1 128 65.6
BolC9t56844H Brassica oleracea HOM05D005248 ORTHO05D006409 1.5e-41 173.7 129 67.4
Lalb_Chr12g0202581 Lupinus albus HOM05D005248 ORTHO05D006409 2.6e-41 172.9 128 64.1
BraA02t06314Z Brassica rapa HOM05D005248 ORTHO05D006409 3.3e-41 172.6 135 64.4
MELO3C008773.2 Cucumis melo HOM05D005248 ORTHO05D006409 3.3e-41 172.6 113 67.3
Atru.chr10.902 Acer truncatum HOM05D005248 ORTHO05D006409 7.4e-41 171.4 163 54.0
Lsat_1_v5_gn_1_30140 Lactuca sativa HOM05D005248 ORTHO05D006409 7.4e-41 171.4 126 65.9
MD06G1128800 Malus domestica HOM05D005248 ORTHO05D006409 7.4e-41 171.4 128 63.3
Medtr8g096070 Medicago truncatula HOM05D005248 ORTHO05D006409 7.4e-41 171.4 113 66.4
CsaV3_2G009360 Cucumis sativus L. HOM05D005248 ORTHO05D006409 9.7e-41 171.0 113 66.4
HanXRQChr02g0034361 Helianthus annuus HOM05D005248 ORTHO05D006409 9.7e-41 171.0 128 64.8
Nitab4.5_0012624g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 9.7e-41 171.0 129 66.7
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 9.7e-41 171.0 136 62.5
ATR0582G036 Amborella trichopoda HOM05D005248 ORTHO05D006409 1.3e-40 170.6 136 64.7
Zm00001eb198100 Zea mays HOM05D005248 ORTHO05D006409 1.3e-40 170.6 134 59.0
vmacro16762 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 1.7e-40 170.2 111 71.2
Lj5A86T66 Lonicera japonica HOM05D005248 ORTHO05D006409 3.7e-40 169.1 132 59.8
Haze_07087 Corylus avellana HOM05D005248 ORTHO05D006409 6.3e-40 168.3 169 53.8
Glyma.08G007100 Glycine max HOM05D005248 ORTHO05D006409 1.4e-39 167.2 113 64.6
vmacro19110 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 1.4e-39 167.2 159 53.5
Nn3g16250 Nelumbo nucifera HOM05D005248 ORTHO05D006409 3.1e-39 166.0 125 63.2
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 5.3e-39 165.2 113 65.5
Lsat_1_v5_gn_9_37901 Lactuca sativa HOM05D005248 ORTHO05D006409 3.5e-38 162.5 113 68.1
Os11g0528300 Oryza sativa ssp. japonica HOM05D005248 ORTHO05D006409 4.5e-38 162.2 113 67.3
vmacro19116 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 1.5e-36 157.1 177 47.5
SMO146G0118 Selaginella moellendorffii HOM05D005248 ORTHO05D006409 4.7e-35 152.1 114 59.6
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 6.7e-34 148.3 191 41.9
CiPaw.12G000300 Carya illinoinensis HOM05D005248 ORTHO05D006409 2.0e-33 146.7 109 64.2
Nitab4.5_0010893g0020 Nicotiana tabacum HOM05D005248 ORTHO05D006409 7.5e-33 144.8 102 70.6
Sabra15G0128600 Salix brachista HOM05D005248 ORTHO05D006409 1.1e-31 141.0 215 38.1
CSS0028005 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 1.4e-31 140.6 104 67.3
Gohir.A07G044532 Gossypium hirsutum HOM05D005248 ORTHO05D006409 7.0e-31 138.3 87 70.1
Mapoly0022s0036 Marchantia polymorpha HOM05D005248 ORTHO05D006409 5.9e-30 135.2 113 56.6
Pp3c16_25170 Physcomitrium patens HOM05D005248 ORTHO05D006409 2.2e-29 133.3 113 54.9
Lj4g0025558 Lotus japonicus HOM05D005248 ORTHO05D006409 2.7e-27 126.3 135 51.1
PSO675G1946 Papaver somniferum HOM05D005248 ORTHO05D006409 1.8e-26 123.6 81 75.3
Gohir.A11G038833 Gossypium hirsutum HOM05D005248 ORTHO05D006409 4.8e-24 115.5 86 61.6
Zm00001eb113310 Zea mays HOM05D005248 ORTHO05D006409 6.3e-24 115.2 78 62.8
Cre12.g550750 Chlamydomonas reinhardtii HOM05D005248 ORTHO05D006409 2.7e-22 109.8 104 51.0
BcaC04g20744 Brassica carinata HOM05D005248 ORTHO05D006409 3.5e-22 109.4 72 68.1
Rhsim12G0181600 Rhododendron simsii HOM05D005248 ORTHO05D006409 5.9e-22 108.6 82 67.1
TPR.G12753 Trifolium pratense HOM05D005248 ORTHO05D006409 5.9e-22 108.6 72 62.5
QL10p017282 Quercus lobata HOM05D005248 ORTHO05D006409 2.1e-19 100.1 65 64.6
PSO782G1846 Papaver somniferum HOM05D002010 ORTHO05D001602 1.2e-17 94.4 113 44.2
MCO01G238 Micromonas commoda HOM05D005248 ORTHO05D006409 1.5e-17 94.0 109 43.1
PSO339G3181 Papaver somniferum HOM05D002010 ORTHO05D001602 1.7e-16 90.5 60 63.3
Nitab4.5_0002540g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 2.2e-16 90.1 73 69.9
PRCOL_00003706 Prasinoderma coloniale HOM05D005248 ORTHO05D006409 2.2e-16 90.1 106 38.7
CAN.G412.4 Capsicum annuum HOM05D005248 ORTHO05D006409 2.8e-16 89.7 58 70.7
PSO541G5229 Papaver somniferum HOM05D002010 ORTHO05D001602 1.4e-15 87.4 60 63.3
PSO017G5960 Papaver somniferum HOM05D002010 ORTHO05D001602 1.1e-12 77.8 31 93.5
PSO782G4343 Papaver somniferum HOM05D002010 ORTHO05D001602 2.8e-11 73.2 51 60.8
TPR.G20580 Trifolium pratense HOM05D005248 ORTHO05D006409 4.7e-11 72.4 56 67.9


User provided reference genes

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