Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G2745 Papaver somniferum HOM05D005265 ORTHO05D006326 2.4e-105 385.6 201 100.0
PSO675G1042 Papaver somniferum HOM05D005265 ORTHO05D006326 1.8e-65 253.1 132 99.2
TAR624G1044 Trochodendron aralioides HOM05D005265 ORTHO05D006326 2.8e-53 212.6 129 84.5
Lj1g0015817 Lotus japonicus HOM05D005265 ORTHO05D006326 1.4e-52 210.3 129 83.7
Sp1g26220 Schrenkiella parvula HOM05D005265 ORTHO05D006326 1.4e-52 210.3 130 84.6
Eucgr.D00234 Eucalyptus grandis HOM05D005265 ORTHO05D006326 5.2e-52 208.4 130 83.8
Cpa.g.sc17.68 Carica papaya HOM05D005265 ORTHO05D006326 6.8e-52 208.0 129 83.7
Oeu040090.1 Olea europaea HOM05D005265 ORTHO05D006326 6.8e-52 208.0 130 84.6
BcaC01g00188 Brassica carinata HOM05D005265 ORTHO05D006326 8.9e-52 207.6 130 83.1
A08p24490 Brassica napus HOM05D005265 ORTHO05D006326 8.9e-52 207.6 130 83.1
C03p76720 Brassica napus HOM05D005265 ORTHO05D006326 8.9e-52 207.6 130 83.1
BraA08t34405Z Brassica rapa HOM05D005265 ORTHO05D006326 8.9e-52 207.6 130 83.1
DCAR_004804 Daucus carota HOM05D005265 ORTHO05D006326 2.0e-51 206.5 130 82.3
Prupe.4G088200 Prunus persica HOM05D005265 ORTHO05D006326 2.0e-51 206.5 130 80.8
CSS0007721 Camellia sinensis var. sinensis HOM05D005265 ORTHO05D006326 2.6e-51 206.1 131 82.4
CSS0016265 Camellia sinensis var. sinensis HOM05D005265 ORTHO05D006326 2.6e-51 206.1 131 82.4
Glyma.15G194300 Glycine max HOM05D005265 ORTHO05D006326 2.6e-51 206.1 129 83.7
Duzib132G0868 Durio zibethinus HOM05D005265 ORTHO05D006326 3.4e-51 205.7 129 82.2
TAR626G0103 Trochodendron aralioides HOM05D005265 ORTHO05D006326 3.4e-51 205.7 130 81.5
BcaB03g12211 Brassica carinata HOM05D005265 ORTHO05D006326 4.4e-51 205.3 130 81.5
Dinv15893 Davidia involucrata HOM05D005265 ORTHO05D006326 4.4e-51 205.3 130 82.3
GSVIVG01021584001 Vitis vinifera HOM05D005265 ORTHO05D006326 5.8e-51 204.9 129 80.6
CANSAT35G0137 Cannabis sativa HOM05D005265 ORTHO05D006326 7.5e-51 204.5 129 81.4
DCAR_004805 Daucus carota HOM05D005265 ORTHO05D006326 7.5e-51 204.5 131 83.2
THA.LOC104814318 Tarenaya hassleriana HOM05D005265 ORTHO05D006326 7.5e-51 204.5 133 82.0
Thecc.02G010800 Theobroma cacao HOM05D005265 ORTHO05D006326 9.8e-51 204.1 129 80.6
CiPaw.10G086700 Carya illinoinensis HOM05D005265 ORTHO05D006326 1.3e-50 203.8 129 81.4
Migut.M01877 Erythranthe guttata HOM05D005265 ORTHO05D006326 1.3e-50 203.8 131 81.7
THA.LOC104812683 Tarenaya hassleriana HOM05D005265 ORTHO05D006326 1.3e-50 203.8 130 83.1
Aa31LG6G5400 Aethionema arabicum HOM05D005265 ORTHO05D006326 1.7e-50 203.4 131 81.7
Gohir.D02G238400 Gossypium hirsutum HOM05D005265 ORTHO05D006326 1.7e-50 203.4 130 80.0
Gorai.005G266900 Gossypium raimondii HOM05D005265 ORTHO05D006326 1.7e-50 203.4 130 80.0
TAR626G0742 Trochodendron aralioides HOM05D005265 ORTHO05D006326 1.7e-50 203.4 130 78.5
AT1G30380 Arabidopsis thaliana HOM05D005265 ORTHO05D006326 2.2e-50 203.0 130 80.8
Cc09_g08490 Coffea canephora HOM05D005265 ORTHO05D006326 2.2e-50 203.0 130 83.1
CDE12G0489 Ceratophyllum demersum HOM05D005265 ORTHO05D006326 3.7e-50 202.2 130 78.5
Glyma.09G087700 Glycine max HOM05D005265 ORTHO05D006326 3.7e-50 202.2 133 81.2
HanXRQChr04g0113581 Helianthus annuus HOM05D005265 ORTHO05D006326 3.7e-50 202.2 130 80.8
CARHR029770 Cardamine hirsuta HOM05D005265 ORTHO05D006326 4.9e-50 201.8 130 80.0
Thhalv10009090m.g Eutrema salsugineum HOM05D005265 ORTHO05D006326 4.9e-50 201.8 131 81.7
MD00G1109700 Malus domestica HOM05D005265 ORTHO05D006326 4.9e-50 201.8 130 80.0
PGR083G1323 Punica granatum HOM05D005265 ORTHO05D006326 4.9e-50 201.8 129 79.8
CDE01G0641 Ceratophyllum demersum HOM05D005265 ORTHO05D006326 6.4e-50 201.4 165 66.7
CiPaw.09G117100 Carya illinoinensis HOM05D005265 ORTHO05D006326 8.3e-50 201.1 129 81.4
Dinv32199 Davidia involucrata HOM05D005265 ORTHO05D006326 8.3e-50 201.1 130 80.8
Phvul.009G216400 Phaseolus vulgaris HOM05D005265 ORTHO05D006326 8.3e-50 201.1 129 80.6
Aqoxy4G00026 Aquilegia oxysepala HOM05D005265 ORTHO05D006326 1.1e-49 200.7 132 78.0
Nitab4.5_0003368g0030 Nicotiana tabacum HOM05D005265 ORTHO05D006326 1.1e-49 200.7 130 80.8
EL10Ac7g15766 Beta vulgaris HOM05D005265 ORTHO05D006326 1.4e-49 200.3 129 79.8
Haze_05746 Corylus avellana HOM05D005265 ORTHO05D006326 1.4e-49 200.3 130 80.0
Gohir.A03G216800 Gossypium hirsutum HOM05D005265 ORTHO05D006326 1.4e-49 200.3 130 79.2
Nitab4.5_0002991g0030 Nicotiana tabacum HOM05D005265 ORTHO05D006326 1.4e-49 200.3 130 80.0
Potri.006G254200 Populus trichocarpa HOM05D005265 ORTHO05D006326 1.4e-49 200.3 131 81.7
Sabra18G0029900 Salix brachista HOM05D005265 ORTHO05D006326 1.4e-49 200.3 134 80.6
arahy.Tifrunner.gnm1.ann1.9042LP Arachis hypogaea HOM05D005265 ORTHO05D006326 1.9e-49 199.9 129 79.1
BraA09t39132Z Brassica rapa HOM05D005265 ORTHO05D006326 1.9e-49 199.9 131 81.7
COL.COLO4_17668 Corchorus olitorius HOM05D005265 ORTHO05D006326 2.4e-49 199.5 129 77.5
Duzib248G0887 Durio zibethinus HOM05D005265 ORTHO05D006326 2.4e-49 199.5 129 79.8
Lalb_Chr08g0233241 Lupinus albus HOM05D005265 ORTHO05D006326 2.4e-49 199.5 129 76.7
BolC3t19927H Brassica oleracea HOM05D005265 ORTHO05D006326 3.2e-49 199.1 130 80.8
Hma1.2p1_0689F.1_g203690 Hydrangea macrophylla HOM05D005265 ORTHO05D006326 3.2e-49 199.1 130 80.0
Hma1.2p1_1418F.1_g282220 Hydrangea macrophylla HOM05D005265 ORTHO05D006326 3.2e-49 199.1 130 80.0
AL1G44320 Arabidopsis lyrata HOM05D005265 ORTHO05D006326 4.1e-49 198.7 131 80.9
Ca_12734_v3 Cicer arietinum L. HOM05D005265 ORTHO05D006326 4.1e-49 198.7 130 80.0
Ca_12740_v3 Cicer arietinum L. HOM05D005265 ORTHO05D006326 4.1e-49 198.7 130 80.0
RcHm_v2.0_Chr5g0015361 Rosa chinensis HOM05D005265 ORTHO05D006326 4.1e-49 198.7 130 80.0
SalBow8G5437 Salvia bowleyana HOM05D005265 ORTHO05D006326 4.1e-49 198.7 130 80.0
VMungo1309G1099 Vigna mungo HOM05D005265 ORTHO05D006326 4.1e-49 198.7 129 79.1
BcaC05g27071 Brassica carinata HOM05D005265 ORTHO05D006326 5.4e-49 198.4 131 80.9
A09p36080 Brassica napus HOM05D005265 ORTHO05D006326 5.4e-49 198.4 131 80.9
C05p29330 Brassica napus HOM05D005265 ORTHO05D006326 5.4e-49 198.4 131 80.9
BolC5t31665H Brassica oleracea HOM05D005265 ORTHO05D006326 5.4e-49 198.4 131 80.9
FAN16G0550 Fragaria x ananassa HOM05D005265 ORTHO05D006326 7.0e-49 198.0 130 79.2
Manes.14G134800 Manihot esculenta HOM05D005265 ORTHO05D006326 7.0e-49 198.0 129 76.0
Phvul.002G140800 Phaseolus vulgaris HOM05D005265 ORTHO05D006326 7.0e-49 198.0 129 79.8
arahy.Tifrunner.gnm1.ann1.ZS1M1K Arachis hypogaea HOM05D005265 ORTHO05D006326 9.2e-49 197.6 129 78.3
BcaB07g32648 Brassica carinata HOM05D005265 ORTHO05D006326 1.2e-48 197.2 132 79.5
Sopen08g002900 Solanum pennellii HOM05D005265 ORTHO05D006326 1.2e-48 197.2 130 79.2
Atru.chr10.966 Acer truncatum HOM05D005265 ORTHO05D006326 1.6e-48 196.8 129 79.8
Manes.06G061100 Manihot esculenta HOM05D005265 ORTHO05D006326 1.6e-48 196.8 130 75.4
QL05p054070 Quercus lobata HOM05D005265 ORTHO05D006326 1.6e-48 196.8 129 79.8
CAN.G1882.1 Capsicum annuum HOM05D005265 ORTHO05D006326 2.0e-48 196.4 130 79.2
FAN25G1721 Fragaria x ananassa HOM05D005265 ORTHO05D006326 2.0e-48 196.4 130 78.5
MBI02_g44634_MAGBIO Magnolia biondii HOM05D005265 ORTHO05D006326 2.7e-48 196.1 132 75.0
Solyc08g006930.3 Solanum lycopersicum HOM05D005265 ORTHO05D006326 2.7e-48 196.1 130 78.5
PGSC0003DMG400020505 Solanum tuberosum HOM05D005265 ORTHO05D006326 3.5e-48 195.7 130 78.5
AUR62038135 Chenopodium quinoa HOM05D005265 ORTHO05D006326 4.6e-48 195.3 130 80.0
Ciclev10017170m.g Citrus clementina HOM05D005265 ORTHO05D006326 4.6e-48 195.3 125 80.8
MBI02_g40641_MAGBIO Magnolia biondii HOM05D005265 ORTHO05D006326 4.6e-48 195.3 132 75.0
Ah.08g216220 Amaranthus hybridus HOM05D000506 ORTHO05D000369 6.0e-48 194.9 122 81.1
ClCG01G025030 Citrullus lanatus HOM05D005265 ORTHO05D006326 6.0e-48 194.9 130 77.7
CsaV3_6G052210 Cucumis sativus L. HOM05D005265 ORTHO05D006326 6.0e-48 194.9 133 77.4
ECA236G4370 Erigeron canadensis HOM05D005265 ORTHO05D006326 6.0e-48 194.9 136 77.9
Cfa000859 Carpinus fangiana HOM05D005265 ORTHO05D006326 7.8e-48 194.5 130 78.5
HanXRQChr15g0481551 Helianthus annuus HOM05D005265 ORTHO05D006326 1.0e-47 194.1 131 80.2
FvH4_3g09680 Fragaria vesca HOM05D005265 ORTHO05D006326 1.3e-47 193.7 130 76.9
FAN11G2263 Fragaria x ananassa HOM05D005265 ORTHO05D006326 1.3e-47 193.7 130 76.9
Peaxi162Scf00045g02242 Petunia axillaris HOM05D005265 ORTHO05D006326 1.7e-47 193.4 131 78.6
MSTRG.7528 Avicennia marina HOM05D005265 ORTHO05D006326 2.3e-47 193.0 132 75.0
AUR62009823 Chenopodium quinoa HOM05D005265 ORTHO05D006326 2.3e-47 193.0 130 79.2
Carub.0001s2858 Capsella rubella HOM05D005265 ORTHO05D006326 3.0e-47 192.6 130 79.2
Sc24g0001600 Simmondsia chinensis HOM05D005265 ORTHO05D006326 3.0e-47 192.6 130 77.7
Nitab4.5_0000100g0280 Nicotiana tabacum HOM05D005265 ORTHO05D006326 3.9e-47 192.2 130 75.4
Nitab4.5_0001809g0020 Nicotiana tabacum HOM05D005265 ORTHO05D006326 3.9e-47 192.2 130 76.2
MD05G1276100 Malus domestica HOM05D005265 ORTHO05D006326 8.6e-47 191.0 135 74.8
Medtr1g026820 Medicago truncatula HOM05D005265 ORTHO05D006326 8.6e-47 191.0 130 76.9
Duzib052G0655 Durio zibethinus HOM05D005265 ORTHO05D006326 1.1e-46 190.7 130 78.5
Potri.018G027600 Populus trichocarpa HOM05D005265 ORTHO05D006326 1.1e-46 190.7 132 78.0
unitig_61.g26080 Utricularia gibba HOM05D005265 ORTHO05D006326 1.9e-46 189.9 132 75.0
Actinidia13436 Actinidia chinensis HOM05D005265 ORTHO05D006326 2.5e-46 189.5 129 76.0
MELO3C007091.2 Cucumis melo HOM05D005265 ORTHO05D006326 4.3e-46 188.7 130 76.9
SGA_v2.0_scaffold223G42844 Striga asiatica HOM05D005265 ORTHO05D006326 7.3e-46 188.0 127 78.0
Sed0012654 Sechium edule HOM05D005265 ORTHO05D006326 1.2e-45 187.2 130 76.9
TWI09G0405 Tripterygium wilfordii HOM05D005265 ORTHO05D006326 2.8e-45 186.0 128 75.0
ATR0681G400 Amborella trichopoda HOM05D005265 ORTHO05D006326 1.8e-44 183.3 129 74.4
vmacro03415 Vaccinium macrocarpon HOM05D005265 ORTHO05D006326 1.8e-44 183.3 129 72.9
Actinidia33666 Actinidia chinensis HOM05D005265 ORTHO05D006326 2.3e-44 183.0 129 72.9
Lsat_1_v5_gn_7_32001 Lactuca sativa HOM05D005265 ORTHO05D006326 2.3e-44 183.0 146 71.2
TPR.G24497 Trifolium pratense HOM05D005265 ORTHO05D006326 3.1e-44 182.6 131 73.3
Sed0026922 Sechium edule HOM05D005265 ORTHO05D006326 8.9e-44 181.0 131 73.3
TWI73G0862 Tripterygium wilfordii HOM05D005265 ORTHO05D006326 1.2e-43 180.6 131 71.8
HPP92_019500 Vanilla planifolia HOM05D005265 ORTHO05D006326 2.6e-43 179.5 132 71.2
Hund18717 Selenicereus undatus HOM05D005265 ORTHO05D006326 9.8e-43 177.6 136 72.8
FAN21G2293 Fragaria x ananassa HOM05D005265 ORTHO05D006326 2.2e-42 176.4 104 85.6
Os07g0148900 Oryza sativa ssp. japonica HOM05D005265 ORTHO05D006326 8.3e-42 174.5 131 71.0
Lalb_Chr23g0275991 Lupinus albus HOM05D005265 ORTHO05D006326 1.9e-41 173.3 103 83.5
Rhsim13G0119400 Rhododendron simsii HOM05D005265 ORTHO05D006326 2.4e-41 172.9 129 70.5
SEGI_05857 Sequoiadendron giganteum HOM05D005265 ORTHO05D006326 3.2e-41 172.6 134 67.9
Psat0s1315g0080 Pisum sativum HOM05D005265 ORTHO05D006326 1.2e-40 170.6 161 60.9
Zm00001eb299990 Zea mays HOM05D005265 ORTHO05D006326 2.7e-40 169.5 128 68.0
Mapoly0125s0033 Marchantia polymorpha HOM05D005265 ORTHO05D006326 1.0e-39 167.5 132 67.4
Pp3c13_10540 Physcomitrium patens HOM05D005265 ORTHO05D006326 5.1e-39 165.2 134 67.2
Pp3c3_10740 Physcomitrium patens HOM05D005265 ORTHO05D006326 6.6e-39 164.9 133 68.4
Sp4g16930 Schrenkiella parvula HOM05D005265 ORTHO05D006326 6.8e-36 154.8 132 65.9
Nn3g20272 Nelumbo nucifera HOM05D005265 ORTHO05D006326 1.2e-35 154.1 132 68.2
Nn4g26654 Nelumbo nucifera HOM05D005265 ORTHO05D006326 1.1e-33 147.5 132 65.9
AagrBONN_evm.TU.Sc2ySwM_369.184 Anthoceros agrestis HOM05D005265 ORTHO05D006326 2.1e-32 143.3 133 60.9
Pp3c13_10520 Physcomitrium patens HOM05D005265 ORTHO05D006326 2.7e-32 142.9 88 80.7
CBR_g39729 Chara braunii HOM05D005265 ORTHO05D006326 1.1e-28 131.0 140 53.6
SMO358G0410 Selaginella moellendorffii HOM05D005265 ORTHO05D006326 5.1e-23 112.1 78 71.8
Nn8g40769 Nelumbo nucifera HOM05D005265 ORTHO05D006326 1.6e-21 107.1 71 76.1
Cre17.g724300 Chlamydomonas reinhardtii HOM05D005265 ORTHO05D006326 9.0e-20 101.3 119 52.1
RcHm_v2.0_Chr5g0036151 Rosa chinensis HOM05D005265 ORTHO05D006326 5.3e-12 75.5 48 79.2
PRCOL_00005455 Prasinoderma coloniale HOM05D005265 ORTHO05D006326 1.9e-09 67.0 93 40.9
MCO04G068 Micromonas commoda HOM05D005265 ORTHO05D006326 1.2e-08 64.3 129 35.7


User provided reference genes

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