Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G2657 Papaver somniferum HOM05D005256 ORTHO05D006491 7.4e-98 360.9 237 100.0
PSO675G8904 Papaver somniferum HOM05D005256 ORTHO05D006491 2.2e-94 349.4 237 97.0
Nn1g09867 Nelumbo nucifera HOM05D005256 ORTHO05D006491 2.3e-43 179.9 133 69.9
CSS0021462 Camellia sinensis var. sinensis HOM05D005256 ORTHO05D006491 2.0e-42 176.8 137 67.9
Haze_05185 Corylus avellana HOM05D005256 ORTHO05D006491 2.0e-42 176.8 148 62.8
TPR.G31382 Trifolium pratense HOM05D005256 ORTHO05D006491 3.4e-42 176.0 148 64.2
EL10Ac7g17298 Beta vulgaris HOM05D005256 ORTHO05D006491 5.8e-42 175.3 150 61.3
Eucgr.D00001 Eucalyptus grandis HOM05D005256 ORTHO05D006491 1.7e-41 173.7 156 59.0
TAR624G1249 Trochodendron aralioides HOM05D005256 ORTHO05D006491 8.3e-41 171.4 132 67.4
Atru.chr10.203 Acer truncatum HOM05D005256 ORTHO05D006491 1.9e-40 170.2 145 62.1
MBI07_g44405_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 1.9e-40 170.2 188 53.2
Rhsim13G0136300 Rhododendron simsii HOM05D005256 ORTHO05D006491 1.9e-40 170.2 148 62.8
GSVIVG01001340001 Vitis vinifera HOM05D005256 ORTHO05D006491 2.4e-40 169.9 138 65.9
CSS0003949 Camellia sinensis var. sinensis HOM05D005256 ORTHO05D006491 5.4e-40 168.7 132 65.9
Oeu005126.1 Olea europaea HOM05D005256 ORTHO05D006491 7.0e-40 168.3 155 58.7
CAN.G465.5 Capsicum annuum HOM05D005256 ORTHO05D006491 1.2e-39 167.5 154 59.1
Nitab4.5_0004778g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 1.2e-39 167.5 142 58.5
Prupe.4G121100 Prunus persica HOM05D005256 ORTHO05D006491 1.6e-39 167.2 134 64.2
Sc17g0004300 Simmondsia chinensis HOM05D005256 ORTHO05D006491 1.6e-39 167.2 150 58.0
MD10G1224100 Malus domestica HOM05D005256 ORTHO05D006491 2.0e-39 166.8 154 62.3
Psat1g152160 Pisum sativum HOM05D005256 ORTHO05D006491 2.0e-39 166.8 153 61.4
Medtr2g437530 Medicago truncatula HOM05D005256 ORTHO05D006491 2.7e-39 166.4 152 61.8
Oeu052922.1 Olea europaea HOM05D005256 ORTHO05D006491 2.7e-39 166.4 198 49.5
ATR0737G015 Amborella trichopoda HOM05D005256 ORTHO05D006491 4.6e-39 165.6 153 59.5
TAR626G1126 Trochodendron aralioides HOM05D005256 ORTHO05D006491 4.6e-39 165.6 131 63.4
Dinv07938 Davidia involucrata HOM05D005256 ORTHO05D006491 6.0e-39 165.2 133 66.9
Dinv18415 Davidia involucrata HOM05D005256 ORTHO05D006491 6.0e-39 165.2 133 66.9
Glyma.15G154700 Glycine max HOM05D005256 ORTHO05D006491 7.8e-39 164.9 153 60.8
Potri.003G157100 Populus trichocarpa HOM05D005256 ORTHO05D006491 7.8e-39 164.9 155 60.6
AUR62040985 Chenopodium quinoa HOM05D005256 ORTHO05D006491 1.3e-38 164.1 151 58.3
Ciclev10016618m.g Citrus clementina HOM05D005256 ORTHO05D006491 1.3e-38 164.1 135 63.7
QL11p010746 Quercus lobata HOM05D005256 ORTHO05D006491 1.7e-38 163.7 154 57.8
Sabra03G0114000 Salix brachista HOM05D005256 ORTHO05D006491 1.7e-38 163.7 155 58.7
CiPaw.09G140800 Carya illinoinensis HOM05D005256 ORTHO05D006491 2.3e-38 163.3 133 62.4
vmacro03574 Vaccinium macrocarpon HOM05D005256 ORTHO05D006491 2.3e-38 163.3 136 65.4
Sabra01G0052200 Salix brachista HOM05D005256 ORTHO05D006491 3.9e-38 162.5 154 61.0
Glyma.09G047200 Glycine max HOM05D005256 ORTHO05D006491 5.0e-38 162.2 137 62.8
Manes.16G060225 Manihot esculenta HOM05D005256 ORTHO05D006491 5.0e-38 162.2 131 64.1
MD05G1242300 Malus domestica HOM05D005256 ORTHO05D006491 6.6e-38 161.8 134 64.9
Peaxi162Scf00888g00114 Petunia axillaris HOM05D005256 ORTHO05D006491 6.6e-38 161.8 141 60.3
Hund20133 Selenicereus undatus HOM05D005256 ORTHO05D006491 6.6e-38 161.8 151 58.3
PGSC0003DMG400011293 Solanum tuberosum HOM05D005256 ORTHO05D006491 6.6e-38 161.8 150 56.0
Lalb_Chr18g0051841 Lupinus albus HOM05D005256 ORTHO05D006491 8.6e-38 161.4 190 56.3
Phvul.009G245700 Phaseolus vulgaris HOM05D005256 ORTHO05D006491 8.6e-38 161.4 155 58.1
TWI63G0333 Tripterygium wilfordii HOM05D005256 ORTHO05D006491 1.5e-37 160.6 150 59.3
Ca_02405_v3 Cicer arietinum L. HOM05D005256 ORTHO05D006491 2.5e-37 159.8 153 57.5
Ah.15g091820 Amaranthus hybridus HOM05D005256 ORTHO05D006491 4.3e-37 159.1 142 60.6
Lj6g0014214 Lotus japonicus HOM05D005256 ORTHO05D006491 7.3e-37 158.3 133 61.7
Lalb_Chr15g0083621 Lupinus albus HOM05D005256 ORTHO05D006491 1.6e-36 157.1 133 62.4
Sopen10g001120 Solanum pennellii HOM05D005256 ORTHO05D006491 1.6e-36 157.1 148 57.4
RcHm_v2.0_Chr5g0022081 Rosa chinensis HOM05D005256 ORTHO05D006491 2.8e-36 156.4 134 61.2
Potri.001G073900 Populus trichocarpa HOM05D005256 ORTHO05D006491 6.2e-36 155.2 156 55.1
SalBow7G1744 Salvia bowleyana HOM05D005256 ORTHO05D006491 6.2e-36 155.2 131 61.8
Solyc10g005100.3 Solanum lycopersicum HOM05D005256 ORTHO05D006491 6.2e-36 155.2 143 57.3
COL.COLO4_25022 Corchorus olitorius HOM05D005256 ORTHO05D006491 8.0e-36 154.8 130 61.5
arahy.Tifrunner.gnm1.ann1.98CSRD Arachis hypogaea HOM05D005256 ORTHO05D006491 1.8e-35 153.7 133 61.7
arahy.Tifrunner.gnm1.ann1.QDE700 Arachis hypogaea HOM05D005256 ORTHO05D006491 1.8e-35 153.7 133 61.7
MSTRG.14820 Avicennia marina HOM05D005256 ORTHO05D006491 1.8e-35 153.7 187 55.6
Lsat_1_v5_gn_2_59820 Lactuca sativa HOM05D005256 ORTHO05D006491 1.8e-35 153.7 159 54.7
FvH4_3g13370 Fragaria vesca HOM05D005256 ORTHO05D006491 3.1e-35 152.9 154 55.8
FAN11G1371 Fragaria x ananassa HOM05D005256 ORTHO05D006491 3.1e-35 152.9 154 55.8
FAN16G0515 Fragaria x ananassa HOM05D005256 ORTHO05D006491 3.1e-35 152.9 134 59.7
FAN25G1093 Fragaria x ananassa HOM05D005256 ORTHO05D006491 4.0e-35 152.5 154 55.8
Cpa.g.sc30.65 Carica papaya HOM05D005256 ORTHO05D006491 6.8e-35 151.8 157 54.1
ECA238G2220 Erigeron canadensis HOM05D005256 ORTHO05D006491 6.8e-35 151.8 130 59.2
FAN21G0853 Fragaria x ananassa HOM05D005256 ORTHO05D006491 6.8e-35 151.8 154 55.8
Hma1.2p1_0082F.1_g042560 Hydrangea macrophylla HOM05D005256 ORTHO05D006491 8.9e-35 151.4 137 58.4
THA.LOC104812925 Tarenaya hassleriana HOM05D005256 ORTHO05D006491 1.2e-34 151.0 153 55.6
VMungo1309G1298 Vigna mungo HOM05D005256 ORTHO05D006491 1.2e-34 151.0 131 61.1
Thecc.02G000700 Theobroma cacao HOM05D005256 ORTHO05D006491 1.5e-34 150.6 124 58.1
AT4G20260 Arabidopsis thaliana HOM05D005256 ORTHO05D006491 2.6e-34 149.8 148 54.7
CANSAT35G0328 Cannabis sativa HOM05D005256 ORTHO05D006491 3.4e-34 149.4 138 58.7
Aa31LG6G2690 Aethionema arabicum HOM05D005256 ORTHO05D006491 4.4e-34 149.1 142 54.2
MBI06_g04184_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 9.8e-34 147.9 137 58.4
C07p50830 Brassica napus HOM05D005256 ORTHO05D006491 1.3e-33 147.5 156 52.6
BcaC09g51326 Brassica carinata HOM05D005256 ORTHO05D006491 2.2e-33 146.7 148 53.4
C01p14230 Brassica napus HOM05D005256 ORTHO05D006491 2.2e-33 146.7 148 53.4
BolC1t01388H Brassica oleracea HOM05D005256 ORTHO05D006491 2.2e-33 146.7 148 53.4
BraA01t01138Z Brassica rapa HOM05D005256 ORTHO05D006491 2.2e-33 146.7 148 53.4
BraA03t14315Z Brassica rapa HOM05D005256 ORTHO05D006491 2.2e-33 146.7 148 52.0
CARHR227090 Cardamine hirsuta HOM05D005256 ORTHO05D006491 2.9e-33 146.4 156 52.6
HanXRQChr14g0439031 Helianthus annuus HOM05D005256 ORTHO05D006491 2.9e-33 146.4 140 54.3
A01p11960 Brassica napus HOM05D005256 ORTHO05D006491 3.7e-33 146.0 153 53.6
AL7G33640 Arabidopsis lyrata HOM05D005256 ORTHO05D006491 4.9e-33 145.6 146 54.1
A03p52380 Brassica napus HOM05D005256 ORTHO05D006491 4.9e-33 145.6 148 52.0
Migut.L00006 Erythranthe guttata HOM05D005256 ORTHO05D006491 4.9e-33 145.6 131 56.5
Lsat_1_v5_gn_8_107621 Lactuca sativa HOM05D005256 ORTHO05D006491 4.9e-33 145.6 130 57.7
CDE10G0480 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 6.4e-33 145.2 134 56.0
HPP92_008810 Vanilla planifolia HOM05D005256 ORTHO05D006491 6.4e-33 145.2 128 58.6
BcaNung03497 Brassica carinata HOM05D005256 ORTHO05D006491 1.1e-32 144.4 148 52.0
Thhalv10026094m.g Eutrema salsugineum HOM05D005256 ORTHO05D006491 1.4e-32 144.1 153 52.3
Carub.0007s2091 Capsella rubella HOM05D005256 ORTHO05D006491 1.9e-32 143.7 141 55.3
CiPaw.10G108500 Carya illinoinensis HOM05D005256 ORTHO05D006491 1.9e-32 143.7 126 59.5
CDE10G1097 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 2.4e-32 143.3 135 55.6
AUR62042105 Chenopodium quinoa HOM05D005256 ORTHO05D006491 9.2e-32 141.4 113 64.6
FAN25G0981 Fragaria x ananassa HOM05D005256 ORTHO05D006491 9.2e-32 141.4 154 54.5
BolC7t45581H Brassica oleracea HOM05D005256 ORTHO05D006491 1.2e-31 141.0 235 50.6
BcaC06g30648 Brassica carinata HOM05D005256 ORTHO05D006491 2.1e-31 140.2 178 51.7
Cc09_g04590 Coffea canephora HOM05D005256 ORTHO05D006491 2.1e-31 140.2 135 60.0
THA.LOC104811953 Tarenaya hassleriana HOM05D005256 ORTHO05D006491 2.1e-31 140.2 138 55.1
HanXRQChr15g0487481 Helianthus annuus HOM05D005256 ORTHO05D006491 2.7e-31 139.8 130 55.4
CDE02G1470 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 3.5e-31 139.4 135 54.8
Os02g0285300 Oryza sativa ssp. japonica HOM05D005256 ORTHO05D006491 3.5e-31 139.4 141 54.6
Sp7g18620 Schrenkiella parvula HOM05D005256 ORTHO05D006491 6.0e-31 138.7 146 51.4
ECA232G1901 Erigeron canadensis HOM05D005256 ORTHO05D006491 5.1e-30 135.6 130 56.2
Peaxi162Scf01310g00311 Petunia axillaris HOM05D005256 ORTHO05D006491 5.6e-29 132.1 129 55.8
BcaNung03716 Brassica carinata HOM05D005256 ORTHO05D006491 7.3e-29 131.7 141 53.9
Aa31LG9G8540 Aethionema arabicum HOM05D005256 ORTHO05D006491 1.1e-27 127.9 166 46.4
A09p21180 Brassica napus HOM05D005256 ORTHO05D006491 1.1e-27 127.9 154 48.7
BraA09t37724Z Brassica rapa HOM05D005256 ORTHO05D006491 1.1e-27 127.9 154 48.7
C07p27480 Brassica napus HOM05D005256 ORTHO05D006491 8.9e-27 124.8 169 46.7
BcaC04g21824 Brassica carinata HOM05D005256 ORTHO05D006491 1.2e-26 124.4 154 47.4
C09p27010 Brassica napus HOM05D005256 ORTHO05D006491 1.2e-26 124.4 154 47.4
BolC9t55584H Brassica oleracea HOM05D005256 ORTHO05D006491 1.2e-26 124.4 154 47.4
BcaC06g34533 Brassica carinata HOM05D005256 ORTHO05D006491 2.0e-26 123.6 169 46.2
A06p47070 Brassica napus HOM05D005256 ORTHO05D006491 2.0e-26 123.6 156 48.7
BraA06t27579Z Brassica rapa HOM05D005256 ORTHO05D006491 2.0e-26 123.6 156 48.7
CDE09G1225 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 3.4e-26 122.9 131 50.4
Nitab4.5_0000217g0040 Nicotiana tabacum HOM05D005256 ORTHO05D006491 3.4e-26 122.9 129 54.3
BcaB07g30517 Brassica carinata HOM05D005256 ORTHO05D006491 4.4e-26 122.5 155 48.4
BolC7t43278H Brassica oleracea HOM05D005256 ORTHO05D006491 4.4e-26 122.5 169 46.2
Zm00001eb339340 Zea mays HOM05D005256 ORTHO05D006491 9.9e-26 121.3 158 50.6
HanXRQChr09g0257711 Helianthus annuus HOM05D005256 ORTHO05D006491 1.3e-25 120.9 130 50.8
BcaB07g30940 Brassica carinata HOM05D005256 ORTHO05D006491 2.9e-25 119.8 154 46.8
Os01g0233000 Oryza sativa ssp. japonica HOM05D005256 ORTHO05D006491 2.9e-25 119.8 153 50.3
Zm00001eb119130 Zea mays HOM05D005256 ORTHO05D006491 3.7e-25 119.4 140 52.9
Nitab4.5_0012748g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 1.9e-24 117.1 99 61.6
Sp2g09430 Schrenkiella parvula HOM05D005256 ORTHO05D006491 7.1e-24 115.2 156 45.5
DCAR_003732 Daucus carota HOM05D005256 ORTHO05D006491 1.7e-22 110.5 130 47.7
MBI06_g26562_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 3.0e-22 109.8 105 57.1
Nitab4.5_0001253g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 1.2e-20 104.4 129 48.8
C02p45090 Brassica napus HOM05D005256 ORTHO05D006491 2.1e-20 103.6 155 45.8
BolC2t10548H Brassica oleracea HOM05D005256 ORTHO05D006491 2.1e-20 103.6 155 45.8
Zm00001eb236850 Zea mays HOM05D005256 ORTHO05D006491 2.8e-20 103.2 112 51.8
Lsat_1_v5_gn_9_9820 Lactuca sativa HOM05D005256 ORTHO05D006491 8.7e-14 81.6 120 45.0
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 3.3e-13 79.7 67 58.2
Lalb_Chr20g0114421 Lupinus albus HOM05D005256 ORTHO05D006491 9.6e-13 78.2 125 44.0
Zm00001eb381370 Zea mays HOM05D005256 ORTHO05D006491 6.6e-06 55.5 60 55.0


User provided reference genes

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