Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G2636 Papaver somniferum HOM05D004921 ORTHO05D006008 0.0e+00 1161.0 643 100.0
PSO133G0077 Papaver somniferum HOM05D004921 ORTHO05D006008 0.0e+00 1113.6 643 95.0
TAR381G0204 Trochodendron aralioides HOM05D004921 ORTHO05D006008 2.7e-150 536.6 676 53.8
TAR381G1578 Trochodendron aralioides HOM05D004921 ORTHO05D006008 2.5e-148 530.0 682 52.8
Aqoxy6G00539 Aquilegia oxysepala HOM05D004921 ORTHO05D006008 1.0e-146 524.6 691 49.6
Nn5g28998 Nelumbo nucifera HOM05D004921 ORTHO05D006008 2.4e-143 513.5 681 50.8
RcHm_v2.0_Chr2g0115541 Rosa chinensis HOM05D004921 ORTHO05D006008 4.3e-132 476.1 655 49.8
Manes.12G138700 Manihot esculenta HOM05D004921 ORTHO05D006008 1.4e-130 471.1 704 46.7
Prupe.6G178900 Prunus persica HOM05D004921 ORTHO05D006008 5.2e-130 469.2 585 51.6
Duzib147G0642 Durio zibethinus HOM05D004921 ORTHO05D006008 7.6e-129 465.3 670 48.4
MD01G1023900 Malus domestica HOM05D004921 ORTHO05D006008 2.9e-128 463.4 575 52.2
CiPaw.03G138100 Carya illinoinensis HOM05D004921 ORTHO05D006008 4.9e-128 462.6 495 57.4
Gohir.D11G225200 Gossypium hirsutum HOM05D004921 ORTHO05D006008 8.4e-128 461.8 703 45.9
Gorai.007G242500 Gossypium raimondii HOM05D004921 ORTHO05D006008 1.1e-127 461.5 703 45.9
Gohir.A11G198900 Gossypium hirsutum HOM05D004921 ORTHO05D006008 2.1e-126 457.2 678 46.5
Atru.chr4.263 Acer truncatum HOM05D004921 ORTHO05D006008 6.0e-126 455.7 662 47.6
Potri.005G080200 Populus trichocarpa HOM05D004921 ORTHO05D006008 5.1e-125 452.6 704 46.6
COL.COLO4_11048 Corchorus olitorius HOM05D004921 ORTHO05D006008 8.6e-125 451.8 695 46.0
Sopen04g024290 Solanum pennellii HOM05D004921 ORTHO05D006008 1.9e-124 450.7 680 47.4
PGR004G1500 Punica granatum HOM05D004921 ORTHO05D006008 5.6e-124 449.1 660 46.7
GSVIVG01022188001 Vitis vinifera HOM05D004921 ORTHO05D006008 7.3e-124 448.7 693 46.2
Thecc.01G107800 Theobroma cacao HOM05D004921 ORTHO05D006008 9.6e-124 448.4 688 46.7
Actinidia36610 Actinidia chinensis HOM05D004921 ORTHO05D006008 1.6e-123 447.6 682 46.3
Dinv21950 Davidia involucrata HOM05D004921 ORTHO05D006008 2.1e-123 447.2 338 72.2
Eucgr.I00377 Eucalyptus grandis HOM05D004921 ORTHO05D006008 2.1e-123 447.2 606 49.7
THA.LOC104807708 Tarenaya hassleriana HOM05D004921 ORTHO05D006008 6.2e-123 445.7 591 48.9
Migut.H02393 Erythranthe guttata HOM05D004921 ORTHO05D006008 1.4e-122 444.5 683 46.0
MSTRG.23325 Avicennia marina HOM05D004921 ORTHO05D006008 5.2e-122 442.6 406 61.1
SGA_v2.0_scaffold51G18730 Striga asiatica HOM05D004921 ORTHO05D006008 8.9e-122 441.8 574 50.2
AUR62003756 Chenopodium quinoa HOM05D004921 ORTHO05D006008 1.2e-121 441.4 612 49.7
MSTRG.2547 Avicennia marina HOM05D004921 ORTHO05D006008 1.5e-121 441.0 677 47.1
Carub.0007s0157 Capsella rubella HOM05D004921 ORTHO05D006008 2.0e-121 440.7 582 49.5
CANSAT01G2911 Cannabis sativa HOM05D004921 ORTHO05D006008 2.6e-121 440.3 654 47.1
Rhsim10G0156300 Rhododendron simsii HOM05D004921 ORTHO05D006008 4.4e-121 439.5 644 46.3
Nitab4.5_0001095g0090 Nicotiana tabacum HOM05D004921 ORTHO05D006008 9.9e-121 438.3 697 46.1
TWI53G0980 Tripterygium wilfordii HOM05D004921 ORTHO05D006008 9.9e-121 438.3 703 44.7
AT4G39690 Arabidopsis thaliana HOM05D004921 ORTHO05D006008 1.3e-120 438.0 592 48.5
Duzib187G0704 Durio zibethinus HOM05D004921 ORTHO05D006008 3.8e-120 436.4 383 65.8
AUR62002041 Chenopodium quinoa HOM05D004921 ORTHO05D006008 1.1e-119 434.9 600 49.8
HanXRQChr02g0041141 Helianthus annuus HOM05D004921 ORTHO05D006008 2.4e-119 433.7 684 44.7
Gohir.D12G094600 Gossypium hirsutum HOM05D004921 ORTHO05D006008 4.2e-119 433.0 600 48.8
Gorai.008G103200 Gossypium raimondii HOM05D004921 ORTHO05D006008 5.4e-119 432.6 604 48.5
Sed0006076 Sechium edule HOM05D004921 ORTHO05D006008 7.1e-119 432.2 468 55.8
MELO3C007782.2 Cucumis melo HOM05D004921 ORTHO05D006008 2.1e-118 430.6 688 45.3
Potri.007G087100 Populus trichocarpa HOM05D004921 ORTHO05D006008 2.7e-118 430.3 671 45.2
Hma1.2p1_0070F.1_g037680 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 7.8e-118 428.7 338 69.8
QL06p050536 Quercus lobata HOM05D004921 ORTHO05D006008 7.8e-118 428.7 648 47.1
ATR0661G561 Amborella trichopoda HOM05D004921 ORTHO05D006008 1.3e-117 427.9 600 47.8
TPR.G2186 Trifolium pratense HOM05D004921 ORTHO05D006008 1.7e-117 427.6 677 45.9
Thhalv10024641m.g Eutrema salsugineum HOM05D004921 ORTHO05D006008 3.9e-117 426.4 668 45.5
EL10Ac6g15063 Beta vulgaris HOM05D004921 ORTHO05D006008 8.7e-117 425.2 673 45.5
Ciclev10025222m.g Citrus clementina HOM05D004921 ORTHO05D006008 2.5e-116 423.7 647 45.7
Sp7g36200 Schrenkiella parvula HOM05D004921 ORTHO05D006008 2.5e-116 423.7 686 44.2
CARHR247030 Cardamine hirsuta HOM05D004921 ORTHO05D006008 5.6e-116 422.5 661 44.5
C03p78130 Brassica napus HOM05D004921 ORTHO05D006008 1.3e-115 421.4 633 45.3
MBI05_g00773_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 2.1e-115 420.6 671 46.6
CsaV3_6G045720 Cucumis sativus L. HOM05D004921 ORTHO05D006008 4.8e-115 419.5 607 47.8
BolC3t20076H Brassica oleracea HOM05D004921 ORTHO05D006008 1.5e-113 414.5 664 44.4
BcaC01g00311 Brassica carinata HOM05D004921 ORTHO05D006008 3.4e-113 413.3 665 44.7
BraA08t34298Z Brassica rapa HOM05D004921 ORTHO05D006008 4.4e-113 412.9 572 47.4
Glyma.05G181700 Glycine max HOM05D004921 ORTHO05D006008 5.8e-113 412.5 676 44.7
Lsat_1_v5_gn_5_40701 Lactuca sativa HOM05D004921 ORTHO05D006008 9.9e-113 411.8 582 46.9
Sabra05G0065800 Salix brachista HOM05D004921 ORTHO05D006008 9.9e-113 411.8 550 49.8
CDE04G0927 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 1.7e-112 411.0 560 48.8
Lalb_Chr13g0296081 Lupinus albus HOM05D004921 ORTHO05D006008 1.7e-112 411.0 668 44.8
BcaB03g12266 Brassica carinata HOM05D004921 ORTHO05D006008 2.2e-112 410.6 593 46.4
Lalb_Chr07g0184941 Lupinus albus HOM05D004921 ORTHO05D006008 1.1e-111 408.3 674 43.8
A08p23440 Brassica napus HOM05D004921 ORTHO05D006008 3.2e-111 406.8 602 45.5
ECA246G4277 Erigeron canadensis HOM05D004921 ORTHO05D006008 3.2e-111 406.8 680 43.7
Psat7g053360 Pisum sativum HOM05D004921 ORTHO05D006008 7.1e-111 405.6 686 43.4
AL7G11890 Arabidopsis lyrata HOM05D004921 ORTHO05D006008 4.6e-110 402.9 671 44.7
Lj4g0017071 Lotus japonicus HOM05D004921 ORTHO05D006008 3.9e-109 399.8 443 56.0
Phvul.002G262700 Phaseolus vulgaris HOM05D004921 ORTHO05D006008 8.7e-109 398.7 678 44.1
Sc03g0002320 Simmondsia chinensis HOM05D004921 ORTHO05D006008 1.3e-107 394.8 686 42.6
ClCG01G019030 Citrullus lanatus HOM05D004921 ORTHO05D006008 1.8e-106 391.0 606 45.9
FAN19G2080 Fragaria x ananassa HOM05D004921 ORTHO05D006008 5.3e-106 389.4 670 42.1
VMungo0251G2130 Vigna mungo HOM05D004921 ORTHO05D006008 5.3e-106 389.4 679 42.7
FvH4_1g21670 Fragaria vesca HOM05D004921 ORTHO05D006008 1.7e-104 384.4 658 42.1
FAN28G0310 Fragaria x ananassa HOM05D004921 ORTHO05D006008 1.7e-104 384.4 663 42.5
MD15G1329400 Malus domestica HOM05D004921 ORTHO05D006008 1.1e-103 381.7 383 59.5
Glyma.08G139400 Glycine max HOM05D004921 ORTHO05D006008 3.2e-103 380.2 677 42.8
HPP92_016473 Vanilla planifolia HOM05D004921 ORTHO05D006008 1.2e-102 378.3 427 53.4
FAN26G3332 Fragaria x ananassa HOM05D004921 ORTHO05D006008 2.1e-102 377.5 570 45.8
FAN26G3387 Fragaria x ananassa HOM05D004921 ORTHO05D006008 2.1e-102 377.5 570 45.8
HPP92_027138 Vanilla planifolia HOM05D004921 ORTHO05D006008 2.1e-102 377.5 377 58.4
Hund13647 Selenicereus undatus HOM05D004921 ORTHO05D006008 3.5e-102 376.7 699 40.9
Peaxi162Scf00204g00620 Petunia axillaris HOM05D004921 ORTHO05D006008 7.9e-102 375.6 668 41.2
Ah.03g142660 Amaranthus hybridus HOM05D004921 ORTHO05D006008 1.0e-101 375.2 600 44.8
CDE06G0766 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 1.0e-101 375.2 442 52.0
Gohir.A12G091122 Gossypium hirsutum HOM05D004921 ORTHO05D006008 3.0e-101 373.6 629 43.6
arahy.Tifrunner.gnm1.ann1.WRB6NJ Arachis hypogaea HOM05D004921 ORTHO05D006008 5.1e-101 372.9 651 42.1
FAN23G2445 Fragaria x ananassa HOM05D004921 ORTHO05D006008 5.1e-101 372.9 589 43.8
Aa31LG6G15580 Aethionema arabicum HOM05D004921 ORTHO05D006008 1.9e-100 370.9 670 40.0
Zm00001eb431730 Zea mays HOM05D004921 ORTHO05D006008 1.6e-99 367.9 665 42.4
Lj4A880G51 Lonicera japonica HOM05D004921 ORTHO05D006008 1.4e-98 364.8 661 42.8
arahy.Tifrunner.gnm1.ann1.P05418 Arachis hypogaea HOM05D004921 ORTHO05D006008 1.3e-96 358.2 645 41.6
Haze_24997 Corylus avellana HOM05D004921 ORTHO05D006008 2.2e-96 357.5 691 40.5
Medtr8g091480 Medicago truncatula HOM05D004921 ORTHO05D006008 1.4e-95 354.8 669 41.1
SEGI_07937 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 2.1e-94 350.9 428 50.5
vmacro12934 Vaccinium macrocarpon HOM05D004921 ORTHO05D006008 7.9e-94 349.0 657 39.6
DCAR_001020 Daucus carota HOM05D004921 ORTHO05D006008 2.0e-81 307.8 654 39.0
Cc07_g15680 Coffea canephora HOM05D004921 ORTHO05D006008 5.9e-81 306.2 385 50.9
unitig_0.g2479 Utricularia gibba HOM05D004921 ORTHO05D006008 7.2e-79 299.3 609 39.4
AagrBONN_evm.TU.Sc2ySwM_344.1023 Anthoceros agrestis HOM05D004921 ORTHO05D006008 3.0e-61 240.7 342 42.4
MBI05_g36740_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 1.1e-60 238.8 218 61.5
SEGI_00052 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 5.3e-58 229.9 319 48.3
Sabra07G0072000 Salix brachista HOM05D004921 ORTHO05D006008 2.9e-56 224.2 422 39.8
Pp3c3_27510 Physcomitrium patens HOM05D004921 ORTHO05D006008 4.7e-54 216.9 318 41.5
Mapoly0001s0396 Marchantia polymorpha HOM05D004921 ORTHO05D006008 1.8e-53 214.9 417 37.2
SMO174G0199 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 2.6e-52 211.1 583 31.9
A01p00580 Brassica napus HOM05D004921 ORTHO05D006008 1.4e-50 205.3 287 46.0
Nitab4.5_0000518g0040 Nicotiana tabacum HOM05D004921 ORTHO05D006008 4.5e-49 200.3 463 39.3
BcaNung05547 Brassica carinata HOM05D004921 ORTHO05D006008 2.6e-44 184.5 225 52.0
CBR_g51480 Chara braunii HOM05D004921 ORTHO05D006008 3.7e-43 180.6 528 30.7
Dinv16320 Davidia involucrata HOM05D004921 ORTHO05D006008 4.5e-41 173.7 124 71.0
BraA01t00066Z Brassica rapa HOM05D004921 ORTHO05D006008 8.6e-40 169.5 193 51.8
Hma1.2p1_0070F.1_g037670 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 9.8e-36 156.0 469 35.0
Nitab4.5_0000518g0050 Nicotiana tabacum HOM05D004921 ORTHO05D006008 9.8e-36 156.0 112 71.4
BolC1t00074H Brassica oleracea HOM05D004921 ORTHO05D006008 4.9e-35 153.7 111 69.4
Cc07_g15670 Coffea canephora HOM05D004921 ORTHO05D006008 2.4e-34 151.4 112 68.8
CAN.G727.1 Capsicum annuum HOM05D004921 ORTHO05D006008 3.2e-34 151.0 116 67.2
Zm00001eb069160 Zea mays HOM05D004921 ORTHO05D006008 4.1e-34 150.6 387 34.9
C01p00710 Brassica napus HOM05D004921 ORTHO05D006008 1.2e-33 149.1 112 68.8
Cpa.g.sc82.58 Carica papaya HOM05D004921 ORTHO05D006008 9.5e-31 139.4 113 66.4
SMO197G0017 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 1.4e-29 135.6 224 38.8
Dinv04895 Davidia involucrata HOM05D004921 ORTHO05D006008 3.7e-27 127.5 141 56.7
SEGI_21175 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 8.3e-27 126.3 110 56.4
Nn5g31279 Nelumbo nucifera HOM05D004921 ORTHO05D006008 2.4e-26 124.8 93 71.0
BcaNung00891 Brassica carinata HOM05D004921 ORTHO05D006008 4.1e-26 124.0 90 66.7
Cpa.g.sc82.56 Carica papaya HOM05D004921 ORTHO05D006008 5.4e-26 123.6 89 65.2
Dinv32118 Davidia involucrata HOM05D004921 ORTHO05D006008 2.7e-25 121.3 141 55.3
Dinv40591 Davidia involucrata HOM05D004921 ORTHO05D006008 7.8e-25 119.8 140 55.0
MCO12G391 Micromonas commoda HOM05D004921 ORTHO05D006008 2.3e-21 108.2 345 28.1
Cpa.g.sc82.54 Carica papaya HOM05D004921 ORTHO05D006008 1.5e-20 105.5 82 67.1
CSS0005403 Camellia sinensis var. sinensis HOM05D004921 ORTHO05D006008 1.5e-12 79.0 306 31.0
Os04g0636600 Oryza sativa ssp. japonica HOM05D004921 ORTHO05D006008 4.4e-12 77.4 307 28.0
COL.COLO4_35617 Corchorus olitorius HOM05D004921 ORTHO05D006008 3.0e-08 64.7 45 68.9
MBI14_g34262_MAGBIO Magnolia biondii HOM05D000221 ORTHO05D006008 8.6e-08 63.2 45 64.4
MBI14_g14180_MAGBIO Magnolia biondii HOM05D000221 ORTHO05D006008 1.9e-07 62.0 63 50.8
Cre08.g358950 Chlamydomonas reinhardtii HOM05D004921 ORTHO05D006008 9.6e-07 59.7 147 28.6
Actinidia16048 Actinidia chinensis HOM05D004921 ORTHO05D006008 6.2e-06 57.0 53 52.8


User provided reference genes

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