Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G2602 Papaver somniferum HOM05D004432 ORTHO05D005427 1.1e-215 753.1 379 100.0
PSO675G3183 Papaver somniferum HOM05D004432 ORTHO05D005427 2.8e-192 675.2 357 95.5
TAR624G0396 Trochodendron aralioides HOM05D004432 ORTHO05D005427 1.6e-147 526.6 382 74.3
MD10G1227600 Malus domestica HOM05D004432 ORTHO05D005427 7.3e-140 501.1 381 70.6
COL.COLO4_18029 Corchorus olitorius HOM05D004432 ORTHO05D003521 9.6e-140 500.7 372 70.4
Thecc.02G004200 Theobroma cacao HOM05D004432 ORTHO05D005427 1.2e-139 500.4 380 69.5
MBI18_g00544_MAGBIO Magnolia biondii HOM05D004432 ORTHO05D005427 1.3e-136 490.3 381 70.3
MD05G1247000 Malus domestica HOM05D004432 ORTHO05D005427 3.8e-136 488.8 381 68.8
Atru.chr10.352 Acer truncatum HOM05D004432 ORTHO05D005427 8.7e-133 477.6 384 68.0
Ciclev10015448m.g Citrus clementina HOM05D004432 ORTHO05D005427 1.9e-132 476.5 361 69.0
GSVIVG01015880001 Vitis vinifera HOM05D004432 ORTHO05D005427 1.1e-130 470.7 382 68.8
CsaV3_6G052770 Cucumis sativus L. HOM05D004432 ORTHO05D005427 6.9e-130 468.0 381 66.9
Dinv31191 Davidia involucrata HOM05D004432 ORTHO05D005427 9.0e-130 467.6 383 68.4
Hma1.2p1_0088F.1_g045180 Hydrangea macrophylla HOM05D004432 ORTHO05D005427 3.4e-129 465.7 382 67.3
Aqoxy1G01396 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 5.8e-129 464.9 359 70.2
Sed0004537 Sechium edule HOM05D004432 ORTHO05D005427 5.8e-129 464.9 383 66.6
CSS0030674 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 1.3e-128 463.8 381 66.9
Nn7g38330 Nelumbo nucifera HOM05D004432 ORTHO05D005427 3.8e-128 462.2 360 70.0
GSVIVG01012145001 Vitis vinifera HOM05D004432 ORTHO05D005427 3.8e-128 462.2 383 67.6
Lj1A1149G74 Lonicera japonica HOM05D004432 ORTHO05D005427 1.9e-127 459.9 427 61.8
FAN16G2829 Fragaria x ananassa HOM05D004432 ORTHO05D005427 1.2e-126 457.2 384 67.7
Gohir.D12G047900 Gossypium hirsutum HOM05D004432 ORTHO05D005427 1.2e-126 457.2 380 65.3
FAN25G3492 Fragaria x ananassa HOM05D004432 ORTHO05D005427 1.6e-126 456.8 381 67.2
FvH4_3g12940 Fragaria vesca HOM05D004432 ORTHO05D005427 2.7e-126 456.1 384 67.4
SalBow8G1652 Salvia bowleyana HOM05D004432 ORTHO05D005427 3.5e-126 455.7 382 64.4
Atru.chr8.662 Acer truncatum HOM05D004432 ORTHO05D005427 4.6e-126 455.3 362 67.7
PGSC0003DMG401017733 Solanum tuberosum HOM05D004432 ORTHO05D005427 7.9e-126 454.5 382 64.9
FAN21G3105 Fragaria x ananassa HOM05D004432 ORTHO05D005427 1.0e-125 454.1 384 66.7
Gohir.A12G049500 Gossypium hirsutum HOM05D004432 ORTHO05D005427 6.7e-125 451.4 380 65.0
RcHm_v2.0_Chr5g0021051 Rosa chinensis HOM05D004432 ORTHO05D005427 6.7e-125 451.4 385 67.8
CiPaw.10G104800 Carya illinoinensis HOM05D004432 ORTHO05D005427 4.3e-124 448.7 361 66.2
TWI63G0296 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 1.3e-123 447.2 383 63.4
Duzib248G0466 Durio zibethinus HOM05D004432 ORTHO05D005427 1.6e-123 446.8 406 61.3
Actinidia33704 Actinidia chinensis HOM05D004432 ORTHO05D005427 8.1e-123 444.5 359 67.7
ClCG01G025530 Citrullus lanatus HOM05D004432 ORTHO05D005427 4.0e-122 442.2 429 59.7
ECA232G3357 Erigeron canadensis HOM05D004432 ORTHO05D005427 1.5e-121 440.3 381 63.8
Solyc02g081620.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 4.5e-121 438.7 382 63.4
Phvul.002G325100 Phaseolus vulgaris HOM05D004432 ORTHO05D005427 9.9e-121 437.6 385 64.9
Peaxi162Scf00048g01413 Petunia axillaris HOM05D004432 ORTHO05D005427 1.3e-120 437.2 380 63.4
Manes.03G075400 Manihot esculenta HOM05D004432 ORTHO05D005427 1.7e-120 436.8 382 63.6
TWI15G0381 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 1.7e-120 436.8 383 62.7
CANSAT35G1493 Cannabis sativa HOM05D004432 ORTHO05D005427 2.2e-120 436.4 383 65.3
PGR042G3514 Punica granatum HOM05D004432 ORTHO05D005427 2.2e-120 436.4 387 64.3
Cc09_g05240 Coffea canephora HOM05D004432 ORTHO05D005427 2.9e-120 436.0 363 64.2
Sabra03G0044900 Salix brachista HOM05D004432 ORTHO05D005427 4.9e-120 435.3 388 62.6
TPR.G12851 Trifolium pratense HOM05D004432 ORTHO05D005427 1.1e-119 434.1 387 64.1
MELO3C007033.2 Cucumis melo HOM05D004432 ORTHO05D005427 1.4e-119 433.7 359 65.7
CSS0046356 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 2.7e-118 429.5 405 63.0
Duzib132G0752 Durio zibethinus HOM05D004432 ORTHO05D005427 2.7e-118 429.5 356 63.8
FAN11G2748 Fragaria x ananassa HOM05D004432 ORTHO05D005427 1.3e-115 420.6 360 66.1
Prupe.4G117400 Prunus persica HOM05D004432 ORTHO05D005427 1.3e-115 420.6 380 62.9
TWI15G1036 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 1.6e-115 420.2 376 62.0
Nitab4.5_0010401g0010 Nicotiana tabacum HOM05D004432 ORTHO05D005427 2.8e-115 419.5 358 62.8
Oeu056059.4 Olea europaea HOM05D004432 ORTHO05D005427 4.8e-115 418.7 424 59.2
Gorai.008G050900 Gossypium raimondii HOM05D004432 ORTHO05D005427 6.2e-115 418.3 356 63.5
CAN.G809.71 Capsicum annuum HOM05D004432 ORTHO05D005427 8.2e-115 417.9 393 60.8
TWI34G0639 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 1.1e-114 417.5 395 59.0
Nitab4.5_0006794g0040 Nicotiana tabacum HOM05D004432 ORTHO05D005427 1.4e-114 417.2 358 62.8
Peaxi162Scf00198g01525 Petunia axillaris HOM05D004432 ORTHO05D005427 2.4e-114 416.4 383 61.1
unitig_748.g7489 Utricularia gibba HOM05D004432 ORTHO05D005427 5.8e-113 411.8 384 61.7
Eucgr.E04313 Eucalyptus grandis HOM05D004432 ORTHO05D005427 1.7e-112 410.2 380 61.1
Lalb_Chr05g0222011 Lupinus albus HOM05D004432 ORTHO05D005427 1.7e-112 410.2 385 58.7
SGA_v2.0_scaffold298G47706 Striga asiatica HOM05D004432 ORTHO05D005427 2.9e-112 409.5 384 60.4
DCAR_003760 Daucus carota HOM05D004432 ORTHO05D005427 3.8e-112 409.1 364 64.6
Dinv05655 Davidia involucrata HOM05D004432 ORTHO05D005427 1.9e-111 406.8 383 61.6
Potri.001G160700 Populus trichocarpa HOM05D004432 ORTHO05D005427 2.5e-111 406.4 359 62.7
Actinidia22430 Actinidia chinensis HOM05D004432 ORTHO05D005427 3.2e-111 406.0 359 63.0
Migut.M02008 Erythranthe guttata HOM05D004432 ORTHO05D005427 7.1e-111 404.8 384 59.1
Cpa.g.sc30.114 Carica papaya HOM05D004432 ORTHO05D005427 1.2e-110 404.1 361 63.2
SGA_v2.0_scaffold175G39329 Striga asiatica HOM05D004432 ORTHO05D005427 2.1e-110 403.3 449 54.3
Sopen02g026240 Solanum pennellii HOM05D004432 ORTHO05D005427 4.6e-110 402.1 360 61.1
Lsat_1_v5_gn_8_106840 Lactuca sativa HOM05D004432 ORTHO05D005427 7.9e-110 401.4 377 61.3
Carub.0001s2938 Capsella rubella HOM05D004432 ORTHO05D005427 1.0e-109 401.0 387 61.5
AT1G30970 Arabidopsis thaliana HOM05D004432 ORTHO05D005427 3.0e-109 399.4 390 61.0
Glyma.08G049300 Glycine max HOM05D004432 ORTHO05D005427 1.9e-108 396.7 369 61.8
Medtr8g106220 Medicago truncatula HOM05D004432 ORTHO05D005427 2.5e-108 396.4 364 61.8
HanXRQChr09g0257831 Helianthus annuus HOM05D004432 ORTHO05D005427 5.7e-108 395.2 382 61.5
Oeu018409.2 Olea europaea HOM05D004432 ORTHO05D005427 1.6e-107 393.7 433 55.4
Glyma.05G241800 Glycine max HOM05D004432 ORTHO05D005427 4.8e-107 392.1 386 59.6
Sopen02g010370 Solanum pennellii HOM05D004432 ORTHO05D005427 6.9e-106 388.3 380 57.6
Psat7g005440 Pisum sativum HOM05D004432 ORTHO05D005427 1.0e-104 384.4 366 59.6
Solyc02g032120.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 1.3e-104 384.0 380 57.1
arahy.Tifrunner.gnm1.ann1.GLQ3B3 Arachis hypogaea HOM05D004432 ORTHO05D005427 3.8e-104 382.5 371 60.4
arahy.Tifrunner.gnm1.ann1.AGE02H Arachis hypogaea HOM05D004432 ORTHO05D005427 1.1e-103 380.9 371 60.1
AL1G45380 Arabidopsis lyrata HOM05D004432 ORTHO05D005427 1.9e-103 380.2 364 60.4
VMungo0251G3730 Vigna mungo HOM05D004432 ORTHO05D005427 1.2e-102 377.5 385 56.1
ATR0568G227 Amborella trichopoda HOM05D004432 ORTHO05D005427 2.7e-102 376.3 389 56.8
Aa31LG6G12370 Aethionema arabicum HOM05D004432 ORTHO05D005427 4.6e-102 375.6 362 59.7
BcaB07g32757 Brassica carinata HOM05D004432 ORTHO05D005427 5.7e-100 368.6 385 58.7
Ca_17239_v3 Cicer arietinum L. HOM05D004432 ORTHO05D005427 2.8e-99 366.3 369 57.2
Sabra01G0131600 Salix brachista HOM05D004432 ORTHO05D005427 1.8e-98 363.6 383 56.4
CDE01G0579 Ceratophyllum demersum HOM05D007061 ORTHO05D009017 2.4e-98 363.2 333 63.7
Os09g0560900 Oryza sativa ssp. japonica HOM05D004432 ORTHO05D005427 1.5e-97 360.5 384 57.8
BcaB04g18194 Brassica carinata HOM05D004432 ORTHO05D005427 2.0e-97 360.1 384 57.0
Lj4g0008002 Lotus japonicus HOM05D004432 ORTHO05D005427 2.6e-97 359.8 369 58.5
HPP92_006155 Vanilla planifolia HOM05D004432 ORTHO05D005427 2.6e-97 359.8 365 56.4
MSTRG.16369 Avicennia marina HOM05D004432 ORTHO05D005427 8.5e-96 354.8 360 56.9
SEGI_00495 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 8.5e-96 354.8 393 55.0
THA.LOC104798567 Tarenaya hassleriana HOM05D004432 ORTHO05D005427 1.9e-95 353.6 363 56.2
HPP92_024334 Vanilla planifolia HOM05D004432 ORTHO05D005427 1.9e-95 353.6 360 57.2
EL10Ac6g15345 Beta vulgaris HOM05D004432 ORTHO05D005427 3.2e-95 352.8 398 55.8
BcaC07g37789 Brassica carinata HOM05D004432 ORTHO05D005427 4.2e-95 352.4 382 55.8
AUR62017849 Chenopodium quinoa HOM05D004432 ORTHO05D005427 7.2e-95 351.7 422 53.6
Cfa001128 Carpinus fangiana HOM05D004432 ORTHO05D005427 1.2e-94 350.9 332 60.2
Thhalv10008022m.g Eutrema salsugineum HOM05D004432 ORTHO05D005427 2.3e-93 346.7 384 56.2
Sc16g0004480 Simmondsia chinensis HOM05D004432 ORTHO05D005427 2.6e-92 343.2 365 55.9
Lalb_Chr10g0095541 Lupinus albus HOM05D004432 ORTHO05D005427 5.7e-92 342.0 386 54.4
TAR629G1033 Trochodendron aralioides HOM05D004432 ORTHO05D005427 1.7e-91 340.5 289 64.7
Lalb_Chr09g0330711 Lupinus albus HOM05D004432 ORTHO05D005427 1.4e-90 337.4 361 54.3
BraA09t39051Z Brassica rapa HOM05D004432 ORTHO05D005427 4.1e-90 335.9 386 54.9
BolC5t31752H Brassica oleracea HOM05D004432 ORTHO05D005427 3.4e-89 332.8 383 56.7
Sp1g26830 Schrenkiella parvula HOM05D004432 ORTHO05D005427 7.7e-89 331.6 364 55.5
vmacro03556 Vaccinium macrocarpon HOM05D004432 ORTHO05D005427 1.0e-88 331.3 484 47.1
BcaC05g27130 Brassica carinata HOM05D004432 ORTHO05D005427 1.1e-87 327.8 383 56.1
A08p10850 Brassica napus HOM05D004432 ORTHO05D005427 1.1e-87 327.8 361 54.8
C05p30150 Brassica napus HOM05D004432 ORTHO05D005427 1.1e-87 327.8 383 56.1
AUR62003535 Chenopodium quinoa HOM05D004432 ORTHO05D005427 1.9e-87 327.0 363 55.9
QL11p012272 Quercus lobata HOM05D004432 ORTHO05D005427 2.5e-87 326.6 288 62.2
Hund04373 Selenicereus undatus HOM05D004432 ORTHO05D005427 1.0e-85 321.2 508 43.3
BolC8t48181H Brassica oleracea HOM05D004432 ORTHO05D005427 4.4e-84 315.8 361 53.2
Mapoly0070s0095 Marchantia polymorpha HOM05D004432 ORTHO05D005427 1.3e-83 314.3 406 50.0
TWI32G0924 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 2.8e-83 313.2 319 56.1
Ah.03g147620 Amaranthus hybridus HOM05D004432 ORTHO05D005427 9.1e-82 308.1 347 55.6
AagrBONN_evm.TU.Sc2ySwM_344.4234 Anthoceros agrestis HOM05D004432 ORTHO05D005427 6.5e-80 302.0 397 48.6
BraA08t33081Z Brassica rapa HOM05D004432 ORTHO05D005427 1.1e-79 301.2 360 51.1
Potri.003G074200 Populus trichocarpa HOM05D004432 ORTHO05D005427 9.4e-79 298.1 278 61.5
A09p35240 Brassica napus HOM05D004432 ORTHO05D005427 4.7e-78 295.8 365 52.3
Dinv23013 Davidia involucrata HOM05D004432 ORTHO05D005427 1.5e-71 274.2 255 65.5
Pp3c22_1400 Physcomitrium patens HOM05D004432 ORTHO05D005427 4.2e-71 272.7 410 45.6
Rhsim13G0133800 Rhododendron simsii HOM05D004432 ORTHO05D005427 6.8e-69 265.4 310 55.5
RhsimUnG0176800 Rhododendron simsii HOM05D004432 ORTHO05D005427 6.8e-69 265.4 310 55.5
Haze_05275 Corylus avellana HOM05D004432 ORTHO05D005427 3.7e-67 259.6 278 56.8
SMO239G0124 Selaginella moellendorffii HOM05D004432 ORTHO05D005427 8.0e-62 241.9 388 44.1
CiPaw.09G137500 Carya illinoinensis HOM05D004432 ORTHO05D005427 8.9e-61 238.4 167 70.1
SEGI_03989 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 2.8e-59 233.4 298 50.3
CiPaw.09G137600 Carya illinoinensis HOM05D004432 ORTHO05D005427 1.3e-56 224.6 190 68.9
Zm00001eb104750 Zea mays HOM05D004432 ORTHO05D005427 8.9e-53 211.8 314 48.1
Haze_05262 Corylus avellana HOM05D004432 ORTHO05D005427 4.7e-46 189.5 98 88.8
Rhsim13G0133700 Rhododendron simsii HOM05D004432 ORTHO05D005427 1.5e-44 184.5 99 85.9
RhsimUnG0176700 Rhododendron simsii HOM05D004432 ORTHO05D005427 1.5e-44 184.5 99 85.9
Dinv23014 Davidia involucrata HOM05D004432 ORTHO05D005427 1.6e-41 174.5 92 88.0
SHI20754 Sapria himalayana HOM05D000030 ORTHO05D000009 6.0e-41 172.6 674 28.0
Atru.chr10.360 Acer truncatum HOM05D004432 ORTHO05D005427 3.9e-40 169.9 229 49.8
CBR_g1074 Chara braunii HOM05D004432 ORTHO05D005427 3.9e-40 169.9 362 37.8
CARHR030510 Cardamine hirsuta HOM05D004432 ORTHO05D005427 3.1e-37 160.2 226 51.3
Nitab4.5_0004903g0050 Nicotiana tabacum HOM05D004432 ORTHO05D005427 2.9e-35 153.7 236 42.8
SEGI_09071 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 4.1e-34 149.8 91 83.5
Aqoxy1G01395 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 1.6e-30 137.9 372 32.5
Dinv01000 Davidia involucrata HOM05D004432 ORTHO05D005427 7.1e-26 122.5 192 47.4
Sopen12g027920 Solanum pennellii HOM05D004432 ORTHO05D005427 7.1e-26 122.5 71 78.9
Pp3c19_17160 Physcomitrium patens HOM05D004432 ORTHO05D005427 1.0e-24 118.6 142 53.5
GSVIVG01015874001 Vitis vinifera HOM05D004432 ORTHO05D005427 4.3e-23 113.2 64 79.7
MCO08G042 Micromonas commoda HOM05D004432 ORTHO05D005427 2.1e-22 110.9 180 41.7
Cre06.g305200 Chlamydomonas reinhardtii HOM05D004432 ORTHO05D005427 4.0e-21 106.7 94 51.1
Cfa025961 Carpinus fangiana HOM05D004432 ORTHO05D005427 2.9e-19 100.5 225 34.2
CAN.G958.2 Capsicum annuum HOM05D004432 ORTHO05D005427 6.6e-16 89.4 79 50.6
Psat6g089360 Pisum sativum HOM05D004432 ORTHO05D005427 8.4e-11 72.4 100 48.0
Lj1g0003853 Lotus japonicus HOM05D004432 ORTHO05D005427 9.3e-10 68.9 63 52.4
Psat7g229080 Pisum sativum HOM05D004432 ORTHO05D005427 6.7e-08 62.8 74 48.6


User provided reference genes

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