Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G2534 Papaver somniferum HOM05D001544 ORTHO05D005712 5.6e-108 394.4 221 100.0
PSO675G4981 Papaver somniferum HOM05D001544 ORTHO05D005712 2.2e-104 382.5 221 96.8
Nn5g29207 Nelumbo nucifera HOM05D001544 ORTHO05D002732 5.5e-55 218.4 216 53.2
TAR625G1395 Trochodendron aralioides HOM05D001544 ORTHO05D005712 3.0e-53 212.6 221 53.8
GSVIVG01024183001 Vitis vinifera HOM05D001544 ORTHO05D005712 1.4e-50 203.8 207 57.0
Prupe.8G085800 Prunus persica HOM05D001544 ORTHO05D005712 1.8e-50 203.4 211 51.2
MD10G1064100 Malus domestica HOM05D001544 ORTHO05D005712 9.1e-50 201.1 205 51.2
CsaV3_2G015260 Cucumis sativus L. HOM05D001544 ORTHO05D005712 4.5e-49 198.7 205 50.7
MELO3C023351.2 Cucumis melo HOM05D001544 ORTHO05D005712 7.7e-49 198.0 205 50.7
Hund14027 Selenicereus undatus HOM05D001544 ORTHO05D005712 7.7e-49 198.0 205 53.7
Aqoxy5G01497 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 1.7e-48 196.8 206 49.5
Dinv40055 Davidia involucrata HOM05D001544 ORTHO05D005712 1.7e-48 196.8 221 51.1
QL11p046076 Quercus lobata HOM05D001544 ORTHO05D005712 2.2e-48 196.4 212 50.0
Sed0017058 Sechium edule HOM05D001544 ORTHO05D005712 3.8e-48 195.7 226 49.1
PSO675G0307 Papaver somniferum HOM05D001544 ORTHO05D005712 5.0e-48 195.3 139 84.2
PSO210G7387 Papaver somniferum HOM05D001544 ORTHO05D005712 6.5e-48 194.9 225 49.8
Sc03g0003410 Simmondsia chinensis HOM05D001544 ORTHO05D005712 5.5e-47 191.8 224 49.1
Cfa005097 Carpinus fangiana HOM05D001544 ORTHO05D005712 1.2e-46 190.7 206 48.1
CiPaw.06G128900 Carya illinoinensis HOM05D001544 ORTHO05D005712 4.7e-46 188.7 223 46.6
CANSAT11G1780 Cannabis sativa HOM05D001544 ORTHO05D005712 1.8e-45 186.8 208 51.0
Sed0002010 Sechium edule HOM05D001544 ORTHO05D005712 4.0e-45 185.7 208 49.0
QL06p034007 Quercus lobata HOM05D001544 ORTHO05D005712 1.5e-44 183.7 209 48.8
HanXRQChr13g0414781 Helianthus annuus HOM05D001544 ORTHO05D005712 4.4e-44 182.2 216 48.1
Lj3g0003276 Lotus japonicus HOM05D001544 ORTHO05D005712 7.5e-44 181.4 208 47.1
ClCG11G003920 Citrullus lanatus HOM05D001544 ORTHO05D005712 9.8e-44 181.0 205 48.8
Eucgr.G01724 Eucalyptus grandis HOM05D001544 ORTHO05D005712 2.2e-43 179.9 207 47.3
FvH4_2g10310 Fragaria vesca HOM05D001544 ORTHO05D005712 2.8e-43 179.5 201 49.3
Cpa.g.sc6.211 Carica papaya HOM05D001544 ORTHO05D005712 4.9e-43 178.7 215 47.9
Nitab4.5_0010830g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 4.9e-43 178.7 205 52.2
HanXRQChr14g0441601 Helianthus annuus HOM05D001544 ORTHO05D005712 2.4e-42 176.4 213 47.9
SEGI_21342 Sequoiadendron giganteum HOM05D001544 ORTHO05D005712 2.4e-42 176.4 221 46.2
PGSC0003DMG401022539 Solanum tuberosum HOM05D001544 ORTHO05D005712 2.4e-42 176.4 205 47.3
FAN20G3124 Fragaria x ananassa HOM05D001544 ORTHO05D005712 5.4e-42 175.3 200 47.5
Lalb_Chr01g0002161 Lupinus albus HOM05D001544 ORTHO05D005712 5.4e-42 175.3 210 45.7
Duzib132G0442 Durio zibethinus HOM05D001544 ORTHO05D005712 7.0e-42 174.9 203 48.8
FAN15G2093 Fragaria x ananassa HOM05D001544 ORTHO05D005712 7.0e-42 174.9 201 48.8
RcHm_v2.0_Chr6g0267511 Rosa chinensis HOM05D001544 ORTHO05D005712 7.0e-42 174.9 200 47.5
Lsat_1_v5_gn_2_78361 Lactuca sativa HOM05D001544 ORTHO05D005712 1.6e-41 173.7 214 47.2
PGR042G1893 Punica granatum HOM05D001544 ORTHO05D005712 2.0e-41 173.3 209 45.0
Thecc.02G076200 Theobroma cacao HOM05D001544 ORTHO05D005712 2.7e-41 172.9 207 46.9
Medtr4g032740 Medicago truncatula HOM05D001544 ORTHO05D005712 3.5e-41 172.6 210 45.7
Psat7g226160 Pisum sativum HOM05D001544 ORTHO05D005712 3.5e-41 172.6 206 44.7
Gohir.D02G220200 Gossypium hirsutum HOM05D001544 ORTHO05D005712 4.5e-41 172.2 207 46.9
Gorai.005G248100 Gossypium raimondii HOM05D001544 ORTHO05D005712 4.5e-41 172.2 207 46.9
Hma1.2p1_0266F.1_g106940 Hydrangea macrophylla HOM05D001544 ORTHO05D005712 4.5e-41 172.2 197 48.7
Nitab4.5_0000753g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 5.9e-41 171.8 205 48.3
Atru.chr5.3135 Acer truncatum HOM05D001544 ORTHO05D005712 7.7e-41 171.4 217 44.2
Manes.02G100900 Manihot esculenta HOM05D001544 ORTHO05D005712 1.0e-40 171.0 223 45.7
Manes.01G142600 Manihot esculenta HOM05D001544 ORTHO05D005712 1.3e-40 170.6 204 47.1
CiPaw.07G055800 Carya illinoinensis HOM05D001544 ORTHO05D005712 2.3e-40 169.9 228 43.4
FAN24G0484 Fragaria x ananassa HOM05D001544 ORTHO05D005712 2.3e-40 169.9 211 44.5
DCAR_025988 Daucus carota HOM05D001544 ORTHO05D005712 2.9e-40 169.5 206 46.1
SalBow8G0407 Salvia bowleyana HOM05D001544 ORTHO05D005712 2.9e-40 169.5 216 45.4
Gohir.A03G198800 Gossypium hirsutum HOM05D001544 ORTHO05D005712 5.0e-40 168.7 207 46.4
Phvul.011G039500 Phaseolus vulgaris HOM05D001544 ORTHO05D005712 8.6e-40 167.9 198 44.9
TWI79G0125 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 8.6e-40 167.9 205 45.9
Solyc03g033650.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 1.1e-39 167.5 204 45.1
Ciclev10029261m.g Citrus clementina HOM05D001544 ORTHO05D005712 1.5e-39 167.2 211 44.1
TPR.G34176 Trifolium pratense HOM05D001544 ORTHO05D005712 1.5e-39 167.2 206 44.7
Aqoxy6G02390 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 1.9e-39 166.8 205 46.3
Sopen03g006440 Solanum pennellii HOM05D001544 ORTHO05D005712 2.5e-39 166.4 204 45.1
THA.LOC104821318 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 2.5e-39 166.4 217 44.2
Carub.0005s1750 Capsella rubella HOM05D001544 ORTHO05D005712 4.3e-39 165.6 207 45.9
ECA238G2610 Erigeron canadensis HOM05D002906 ORTHO05D003211 4.3e-39 165.6 196 46.4
Glyma.11G111600 Glycine max HOM05D001544 ORTHO05D005712 4.3e-39 165.6 198 46.0
AT3G51100 Arabidopsis thaliana HOM05D001544 ORTHO05D005712 5.6e-39 165.2 223 44.4
CARHR160690 Cardamine hirsuta HOM05D001544 ORTHO05D005712 7.3e-39 164.9 221 43.9
BcaC06g33056 Brassica carinata HOM05D001544 ORTHO05D005712 1.2e-38 164.1 220 44.1
A03p48120 Brassica napus HOM05D001544 ORTHO05D005712 1.2e-38 164.1 220 44.1
C07p46160 Brassica napus HOM05D001544 ORTHO05D005712 1.2e-38 164.1 220 44.1
BolC7t45132H Brassica oleracea HOM05D001544 ORTHO05D005712 1.2e-38 164.1 220 44.1
BraA03t13919Z Brassica rapa HOM05D001544 ORTHO05D005712 1.2e-38 164.1 220 44.1
Potri.007G016200 Populus trichocarpa HOM05D001544 ORTHO05D005712 1.2e-38 164.1 237 43.0
arahy.Tifrunner.gnm1.ann1.3WL649 Arachis hypogaea HOM05D001544 ORTHO05D005712 1.6e-38 163.7 222 42.8
MSTRG.23282 Avicennia marina HOM05D001544 ORTHO05D005712 1.6e-38 163.7 220 45.0
Oeu021945.1 Olea europaea HOM05D001544 ORTHO05D005712 1.6e-38 163.7 209 44.5
Potri.005G117400 Populus trichocarpa HOM05D001544 ORTHO05D005712 1.6e-38 163.7 206 46.6
Sp5g11110 Schrenkiella parvula HOM05D001544 ORTHO05D005712 1.6e-38 163.7 218 45.0
Prupe.7G164800 Prunus persica HOM05D001544 ORTHO05D005712 2.1e-38 163.3 211 45.0
Migut.L00036 Erythranthe guttata HOM05D001544 ORTHO05D005712 3.6e-38 162.5 205 44.4
Thhalv10010713m.g Eutrema salsugineum HOM05D001544 ORTHO05D005712 4.7e-38 162.2 225 43.1
TWI75G0115 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 6.1e-38 161.8 206 44.2
Aa31LG4G19200 Aethionema arabicum HOM05D001544 ORTHO05D005712 1.0e-37 161.0 239 41.8
RcHm_v2.0_Chr2g0099951 Rosa chinensis HOM05D001544 ORTHO05D005712 1.0e-37 161.0 210 44.3
Rhsim10G0214300 Rhododendron simsii HOM05D001544 ORTHO05D005712 1.4e-37 160.6 211 45.0
AL5G31520 Arabidopsis lyrata HOM05D001544 ORTHO05D005712 1.2e-36 157.5 213 42.7
vmacro22095 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 1.2e-36 157.5 211 44.5
Glyma.01G006900 Glycine max HOM05D001544 ORTHO05D005712 2.6e-36 156.4 198 42.9
MD02G1135800 Malus domestica HOM05D001544 ORTHO05D005712 2.6e-36 156.4 222 43.2
MD15G1249400 Malus domestica HOM05D001544 ORTHO05D005712 2.6e-36 156.4 222 42.8
SGA_v2.0_scaffold51G18782 Striga asiatica HOM05D001544 ORTHO05D005712 2.6e-36 156.4 210 45.7
CSS0013177 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 4.4e-36 155.6 203 43.8
SGA_v2.0_scaffold2G01246 Striga asiatica HOM05D001544 ORTHO05D005712 7.5e-36 154.8 231 42.9
Os06g0713900 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 2.2e-35 153.3 207 41.1
PGSC0003DMG402003620 Solanum tuberosum HOM05D001544 ORTHO05D005712 2.9e-35 152.9 205 44.9
Haze_03811 Corylus avellana HOM05D001544 ORTHO05D005712 4.1e-34 149.1 232 40.9
Migut.H02483 Erythranthe guttata HOM05D001544 ORTHO05D005712 2.7e-33 146.4 198 42.9
VMungo1127G0458 Vigna mungo HOM05D001544 ORTHO05D005712 2.7e-33 146.4 198 41.4
Solyc02g084550.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 7.8e-33 144.8 205 42.9
Dinv23461 Davidia involucrata HOM05D001544 ORTHO05D005712 1.0e-32 144.4 112 65.2
Sopen02g029220 Solanum pennellii HOM05D001544 ORTHO05D005712 1.0e-32 144.4 205 42.9
Zm00001eb227920 Zea mays HOM05D001544 ORTHO05D005712 3.0e-32 142.9 210 40.5
Lj3g0002354 Lotus japonicus HOM05D001544 ORTHO05D005712 1.1e-31 141.0 208 39.4
Peaxi162Scf00010g00610 Petunia axillaris HOM05D001544 ORTHO05D005712 1.9e-31 140.2 205 44.4
PSO170G3698 Papaver somniferum HOM05D001544 ORTHO05D005712 3.3e-31 139.4 129 55.8
CSS0007563 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 1.2e-30 137.5 183 43.2
Cc07_g10380 Coffea canephora HOM05D001544 ORTHO05D005712 3.6e-30 136.0 165 47.3
unitig_0.g2167 Utricularia gibba HOM05D001544 ORTHO05D005712 4.0e-29 132.5 205 39.0
Mapoly0074s0044 Marchantia polymorpha HOM05D001544 ORTHO05D005712 3.4e-28 129.4 215 38.1
EL10As8g23856 Beta vulgaris HOM05D001544 ORTHO05D005712 5.8e-28 128.6 308 34.1
Lalb_Chr19g0138931 Lupinus albus HOM05D001544 ORTHO05D005712 1.3e-27 127.5 181 40.3
HPP92_022282 Vanilla planifolia HOM05D001544 ORTHO05D005712 6.4e-27 125.2 163 46.0
Lj4A214G24 Lonicera japonica HOM05D001544 ORTHO05D005712 8.3e-27 124.8 114 58.8
Cfa006938 Carpinus fangiana HOM05D001544 ORTHO05D005712 4.1e-26 122.5 163 41.1
MBI14_g19731_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 5.4e-26 122.1 216 41.2
arahy.Tifrunner.gnm1.ann1.3TM7ML Arachis hypogaea HOM05D001544 ORTHO05D005712 7.0e-26 121.7 116 50.0
Gohir.D11G185900 Gossypium hirsutum HOM05D001544 ORTHO05D005712 2.7e-25 119.8 223 36.8
vmacro21904 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 4.6e-25 119.0 183 41.5
Rhsim08G0035500 Rhododendron simsii HOM05D001544 ORTHO05D005712 1.0e-24 117.9 172 49.4
Dinv33599 Davidia involucrata HOM05D001544 ORTHO05D005712 5.0e-24 115.5 105 57.1
THA.LOC104826761 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 6.6e-24 115.2 207 35.7
Gohir.A11G178100 Gossypium hirsutum HOM05D001544 ORTHO05D005712 2.5e-23 113.2 236 36.9
Gorai.007G197500 Gossypium raimondii HOM05D001544 ORTHO05D005712 3.3e-23 112.8 231 35.9
Zm00001eb103400 Zea mays HOM05D001544 ORTHO05D005712 3.3e-23 112.8 222 36.0
CDE12G0819 Ceratophyllum demersum HOM05D001544 ORTHO05D002732 4.3e-23 112.5 175 40.0
Ca_19707_v3 Cicer arietinum L. HOM05D001544 ORTHO05D005712 5.6e-23 112.1 175 38.3
Sabra05G0096400 Salix brachista HOM05D001544 ORTHO05D005712 7.3e-23 111.7 227 36.1
arahy.Tifrunner.gnm1.ann1.N6BS4T Arachis hypogaea HOM05D001544 ORTHO05D005712 1.6e-22 110.5 105 51.4
Dinv42006 Davidia involucrata HOM05D001544 ORTHO05D002732 1.6e-22 110.5 213 35.7
FAN23G1654 Fragaria x ananassa HOM05D002906 ORTHO05D003211 1.6e-22 110.5 214 35.5
Thecc.01G023700 Theobroma cacao HOM05D001544 ORTHO05D005712 2.1e-22 110.2 185 38.4
FAN26G2191 Fragaria x ananassa HOM05D001544 ORTHO05D005712 6.2e-22 108.6 205 35.1
FAN28G0278 Fragaria x ananassa HOM05D001544 ORTHO05D005712 6.2e-22 108.6 214 35.0
Oeu037732.1 Olea europaea HOM05D001544 ORTHO05D005712 2.3e-21 106.7 162 41.4
Pp3c3_3130 Physcomitrium patens HOM05D001544 ORTHO05D005712 3.1e-21 106.3 208 30.3
SMO361G0705 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 6.8e-21 105.1 205 34.6
MBI14_g19737_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 5.8e-20 102.1 72 70.8
SMO004G0024 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 1.3e-19 100.9 206 35.9
Pp3c26_11470 Physcomitrium patens HOM05D001544 ORTHO05D005712 8.3e-19 98.2 202 29.2
CARHR160680 Cardamine hirsuta HOM05D001544 ORTHO05D005712 2.4e-18 96.7 211 32.7
TAR381G0232 Trochodendron aralioides HOM05D001544 ORTHO05D005712 2.4e-18 96.7 130 44.6
Sabra07G0013400 Salix brachista HOM05D001544 ORTHO05D005712 7.1e-18 95.1 315 29.8
AagrBONN_evm.TU.Sc2ySwM_362.490 Anthoceros agrestis HOM05D001544 ORTHO05D005712 2.7e-17 93.2 107 42.1
FvH4_1g12190 Fragaria vesca HOM05D001544 ORTHO05D005712 6.0e-17 92.0 175 37.7
Os09g0530700 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 2.3e-16 90.1 109 45.0
Pp3c14_16330 Physcomitrium patens HOM05D001544 ORTHO05D005712 2.8e-14 83.2 200 30.5
FAN23G2664 Fragaria x ananassa HOM05D001544 ORTHO05D005712 3.1e-13 79.7 112 42.0
Zm00001eb319500 Zea mays HOM05D001544 ORTHO05D005712 1.3e-11 74.3 164 33.5
Thecc.01G023500 Theobroma cacao HOM05D001544 ORTHO05D005712 1.7e-11 73.9 154 35.1
Actinidia23006 Actinidia chinensis HOM05D001544 ORTHO05D005712 1.9e-10 70.5 58 55.2
CBR_g12214 Chara braunii HOM05D068249 ORTHO05D005712 5.4e-10 68.9 241 27.8
MBI14_g19736_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 5.4e-10 68.9 57 56.1
TAR626G0405 Trochodendron aralioides HOM05D000010 ORTHO05D016350 1.3e-08 64.3 50 58.0


User provided reference genes

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