Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G2428 Papaver somniferum HOM05D003923 ORTHO05D004553 5.9e-209 730.7 396 100.0
PSO781G0128 Papaver somniferum HOM05D003923 ORTHO05D004553 3.6e-174 615.1 397 81.4
CSS0001866 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 2.4e-40 170.6 420 35.2
Potri.002G094700 Populus trichocarpa HOM05D003923 ORTHO05D004553 5.3e-40 169.5 423 34.5
Rhsim06G0083500 Rhododendron simsii HOM05D003923 ORTHO05D004553 2.0e-39 167.5 428 34.1
Nn5g29082 Nelumbo nucifera HOM05D003923 ORTHO05D004553 7.6e-39 165.6 395 38.5
QL12p036407 Quercus lobata HOM05D003923 ORTHO05D004553 1.7e-38 164.5 436 34.2
CiPaw.08G044000 Carya illinoinensis HOM05D003923 ORTHO05D004553 1.9e-37 161.0 427 34.2
TWI56G0888 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 4.2e-37 159.8 435 35.9
FAN13G1718 Fragaria x ananassa HOM05D003923 ORTHO05D004553 5.5e-37 159.5 425 38.8
MD15G1366500 Malus domestica HOM05D003923 ORTHO05D004553 1.6e-36 157.9 446 35.7
FAN08G0462 Fragaria x ananassa HOM05D003923 ORTHO05D004553 2.1e-36 157.5 425 38.6
FAN04G1592 Fragaria x ananassa HOM05D003923 ORTHO05D004553 4.6e-36 156.4 425 38.8
FvH4_5g37730 Fragaria vesca HOM05D003923 ORTHO05D004553 6.0e-36 156.0 426 38.3
Prupe.1G514400 Prunus persica HOM05D003923 ORTHO05D004553 1.0e-35 155.2 438 34.9
Haze_22250 Corylus avellana HOM05D003923 ORTHO05D004553 1.8e-35 154.5 426 35.0
FAN18G1313 Fragaria x ananassa HOM05D003923 ORTHO05D004553 2.3e-35 154.1 426 37.8
EL10Ac1g01249 Beta vulgaris HOM05D003923 ORTHO05D004553 3.9e-35 153.3 423 34.8
Potri.005G166400 Populus trichocarpa HOM05D003923 ORTHO05D004553 5.1e-35 152.9 425 33.4
RcHm_v2.0_Chr7g0239471 Rosa chinensis HOM05D003923 ORTHO05D004553 5.1e-35 152.9 431 34.6
CiPaw.07G181200 Carya illinoinensis HOM05D003923 ORTHO05D004553 1.1e-34 151.8 423 32.6
Lalb_Chr08g0241981 Lupinus albus HOM05D003923 ORTHO05D004553 1.5e-34 151.4 427 33.7
CSS0021337 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 1.9e-34 151.0 411 34.8
Aqoxy5G01999 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 3.3e-34 150.2 414 36.0
Lalb_Chr11g0065491 Lupinus albus HOM05D003923 ORTHO05D004553 5.7e-34 149.4 435 32.2
Manes.18G068600 Manihot esculenta HOM05D003923 ORTHO05D004553 7.4e-34 149.1 440 30.5
Peaxi162Scf00041g01015 Petunia axillaris HOM05D003923 ORTHO05D004553 7.4e-34 149.1 431 36.7
Sabra05G0125400 Salix brachista HOM05D003923 ORTHO05D004553 7.4e-34 149.1 424 31.8
Cpa.g.sc36.119 Carica papaya HOM05D003923 ORTHO05D004553 6.2e-33 146.0 417 31.7
Cfa013623 Carpinus fangiana HOM05D003923 ORTHO05D004553 6.2e-33 146.0 423 35.7
TWI12G0076 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 6.2e-33 146.0 434 31.8
TAR628G1119 Trochodendron aralioides HOM05D003923 ORTHO05D004553 6.2e-33 146.0 419 33.4
Cc10_g07380 Coffea canephora HOM05D003923 ORTHO05D004553 1.1e-32 145.2 444 34.7
ClCG11G015440 Citrullus lanatus HOM05D003923 ORTHO05D004553 1.4e-32 144.8 390 34.9
Hma1.2p1_0120F.1_g057290 Hydrangea macrophylla HOM05D003923 ORTHO05D004553 1.4e-32 144.8 433 32.1
Gohir.A05G227800 Gossypium hirsutum HOM05D003923 ORTHO05D004553 1.8e-32 144.4 427 34.2
Gorai.009G238400 Gossypium raimondii HOM05D003923 ORTHO05D004553 1.8e-32 144.4 424 34.0
Gohir.D05G230200 Gossypium hirsutum HOM05D003923 ORTHO05D004553 2.4e-32 144.1 423 33.8
CANSAT25G0676 Cannabis sativa HOM05D003923 ORTHO05D004553 3.1e-32 143.7 428 35.3
PSO210G6507 Papaver somniferum HOM05D003923 ORTHO05D004553 6.9e-32 142.5 433 34.9
Lj1g0006284 Lotus japonicus HOM05D003923 ORTHO05D004553 2.0e-31 141.0 424 32.1
MSTRG.24466 Avicennia marina HOM05D003923 ORTHO05D004553 2.6e-31 140.6 403 36.2
BcaB03g15981 Brassica carinata HOM05D003923 ORTHO05D004553 2.6e-31 140.6 420 32.9
PSO447G0218 Papaver somniferum HOM05D003923 ORTHO05D004553 2.6e-31 140.6 434 35.0
BcaC08g47387 Brassica carinata HOM05D003923 ORTHO05D004553 7.6e-31 139.0 422 33.4
C06p52080 Brassica napus HOM05D003923 ORTHO05D004553 7.6e-31 139.0 422 33.4
BolC6t40231H Brassica oleracea HOM05D003923 ORTHO05D004553 7.6e-31 139.0 422 33.4
Oeu024542.1 Olea europaea HOM05D003923 ORTHO05D004553 1.3e-30 138.3 425 33.2
Phvul.009G029900 Phaseolus vulgaris HOM05D003923 ORTHO05D004553 1.7e-30 137.9 419 34.4
ECA232G2894 Erigeron canadensis HOM05D003923 ORTHO05D004553 3.8e-30 136.7 425 31.3
MD08G1180900 Malus domestica HOM05D003923 ORTHO05D004553 3.8e-30 136.7 430 34.0
Medtr3g074210 Medicago truncatula HOM05D003923 ORTHO05D004553 5.0e-30 136.3 435 32.4
Aa31LG4G8160 Aethionema arabicum HOM05D003923 ORTHO05D004553 8.4e-30 135.6 415 33.3
Psat5g138360 Pisum sativum HOM05D003923 ORTHO05D004553 1.9e-29 134.4 439 32.3
BcaB05g25102 Brassica carinata HOM05D003923 ORTHO05D004553 2.5e-29 134.0 408 34.8
Eucgr.F00301 Eucalyptus grandis HOM05D003923 ORTHO05D004553 2.5e-29 134.0 343 32.9
THA.LOC104809709 Tarenaya hassleriana HOM05D003923 ORTHO05D004553 2.5e-29 134.0 424 33.0
CAN.G1261.5 Capsicum annuum HOM05D003923 ORTHO05D004553 5.5e-29 132.9 415 33.5
Gohir.D06G037500 Gossypium hirsutum HOM05D003923 ORTHO05D004553 7.1e-29 132.5 429 32.9
Oeu061492.1 Olea europaea HOM05D003923 ORTHO05D004553 7.1e-29 132.5 439 33.7
Sabra02G0074700 Salix brachista HOM05D003923 ORTHO05D004553 7.1e-29 132.5 279 37.6
TPR.G35206 Trifolium pratense HOM05D003923 ORTHO05D004553 7.1e-29 132.5 436 30.0
Gohir.A06G036700 Gossypium hirsutum HOM05D003923 ORTHO05D004553 3.5e-28 130.2 425 34.4
Solyc12g056990.1 Solanum lycopersicum HOM05D003923 ORTHO05D004553 3.5e-28 130.2 410 32.2
Thecc.08G109100 Theobroma cacao HOM05D003923 ORTHO05D004553 4.6e-28 129.8 435 31.0
MBI02_g08739_MAGBIO Magnolia biondii HOM05D003923 ORTHO05D004553 7.9e-28 129.0 407 36.1
Gorai.010G042400 Gossypium raimondii HOM05D003923 ORTHO05D004553 1.0e-27 128.6 429 32.6
MELO3C010430.2 Cucumis melo HOM05D003923 ORTHO05D004553 1.8e-27 127.9 405 30.1
BcaB02g07147 Brassica carinata HOM05D003923 ORTHO05D004553 3.0e-27 127.1 416 31.2
BraA07t31856Z Brassica rapa HOM05D003923 ORTHO05D004553 1.5e-26 124.8 415 32.3
Eucgr.F02437 Eucalyptus grandis HOM05D003923 ORTHO05D004553 5.7e-26 122.9 425 29.6
Ciclev10001646m.g Citrus clementina HOM05D003923 ORTHO05D004553 7.4e-26 122.5 437 29.5
BraA02t07205Z Brassica rapa HOM05D003923 ORTHO05D004553 1.6e-25 121.3 414 30.7
A02p22020 Brassica napus HOM05D003923 ORTHO05D004553 2.2e-25 120.9 415 30.8
CARHR071570 Cardamine hirsuta HOM05D003923 ORTHO05D004553 2.2e-25 120.9 422 34.4
Duzib041G0577 Durio zibethinus HOM05D003923 ORTHO05D004553 2.2e-25 120.9 431 30.9
Thhalv10018798m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 2.2e-25 120.9 431 32.9
HanXRQChr15g0491381 Helianthus annuus HOM05D003923 ORTHO05D004553 2.2e-25 120.9 435 33.3
C02p35410 Brassica napus HOM05D003923 ORTHO05D004553 2.8e-25 120.6 414 30.4
BcaC03g15795 Brassica carinata HOM05D003923 ORTHO05D004553 4.8e-25 119.8 414 30.7
AL2G38420 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 1.1e-24 118.6 422 31.3
Sp5g33250 Schrenkiella parvula HOM05D003923 ORTHO05D004553 1.1e-24 118.6 423 31.4
Carub.0002s2500 Capsella rubella HOM05D003923 ORTHO05D004553 1.4e-24 118.2 423 31.2
BolC2t09553H Brassica oleracea HOM05D003923 ORTHO05D004553 1.8e-24 117.9 414 30.4
Lsat_1_v5_gn_9_43840 Lactuca sativa HOM05D003923 ORTHO05D004553 1.8e-24 117.9 420 30.0
BraA07t30411Z Brassica rapa HOM05D003923 ORTHO05D004553 3.1e-24 117.1 433 30.7
vmacro21241 Vaccinium macrocarpon HOM05D003923 ORTHO05D004553 4.1e-24 116.7 412 29.1
PGSC0003DMG400009479 Solanum tuberosum HOM05D003923 ORTHO05D004553 5.3e-24 116.3 208 41.8
A07p43360 Brassica napus HOM05D003923 ORTHO05D004553 6.9e-24 115.9 420 31.2
Nitab4.5_0000421g0080 Nicotiana tabacum HOM05D003923 ORTHO05D004553 6.9e-24 115.9 415 32.8
PGR042G1650 Punica granatum HOM05D003923 ORTHO05D004553 9.0e-24 115.5 420 31.2
COL.COLO4_16427 Corchorus olitorius HOM05D003923 ORTHO05D004553 1.2e-23 115.2 410 30.7
PGSC0003DMG400008539 Solanum tuberosum HOM05D003923 ORTHO05D004553 1.2e-23 115.2 411 30.4
Nitab4.5_0002243g0010 Nicotiana tabacum HOM05D003923 ORTHO05D004553 1.5e-23 114.8 368 34.0
Sopen04g029130 Solanum pennellii HOM05D003923 ORTHO05D004553 1.5e-23 114.8 208 41.8
CsaV3_4G028650 Cucumis sativus L. HOM05D003923 ORTHO05D004553 2.0e-23 114.4 409 28.4
Glyma.06G104700 Glycine max HOM05D003923 ORTHO05D004553 2.6e-23 114.0 436 29.4
Nitab4.5_0001992g0040 Nicotiana tabacum HOM05D003923 ORTHO05D004553 3.4e-23 113.6 208 41.3
Sc23g0000110 Simmondsia chinensis HOM05D003923 ORTHO05D004553 5.9e-23 112.8 432 32.9
Duzib093G1759 Durio zibethinus HOM05D003923 ORTHO05D004553 1.3e-22 111.7 441 29.0
Aqoxy6G00599 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 1.7e-22 111.3 403 30.8
Sopen00g003260 Solanum pennellii HOM05D003923 ORTHO05D004553 6.5e-22 109.4 365 35.1
Actinidia30763 Actinidia chinensis HOM05D003923 ORTHO05D004553 8.5e-22 109.0 411 30.2
A07p27700 Brassica napus HOM05D003923 ORTHO05D004553 8.5e-22 109.0 436 30.0
Manes.02G153800 Manihot esculenta HOM05D003923 ORTHO05D004553 8.5e-22 109.0 416 29.3
AT1G78110 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 1.9e-21 107.8 422 30.6
BraA09t39730Z Brassica rapa HOM05D003923 ORTHO05D004553 1.9e-21 107.8 412 28.9
A09p42540 Brassica napus HOM05D003923 ORTHO05D004553 2.5e-21 107.5 412 28.6
Nitab4.5_0000675g0060 Nicotiana tabacum HOM05D003923 ORTHO05D004553 2.5e-21 107.5 403 30.3
Peaxi162Scf00160g00147 Petunia axillaris HOM05D003923 ORTHO05D004553 3.2e-21 107.1 412 31.3
AL1G35680 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 7.2e-21 105.9 422 32.7
MSTRG.22149 Avicennia marina HOM05D003923 ORTHO05D004553 7.2e-21 105.9 208 39.4
Glyma.04G103500 Glycine max HOM05D003923 ORTHO05D004553 9.4e-21 105.5 393 30.3
CARHR022580 Cardamine hirsuta HOM05D003923 ORTHO05D004553 1.2e-20 105.1 418 32.5
Lalb_Chr17g0344141 Lupinus albus HOM05D003923 ORTHO05D004553 1.6e-20 104.8 415 28.4
BcaB07g32243 Brassica carinata HOM05D003923 ORTHO05D004553 3.6e-20 103.6 411 28.2
BcaC05g26150 Brassica carinata HOM05D003923 ORTHO05D004553 3.6e-20 103.6 411 28.2
C05p21350 Brassica napus HOM05D003923 ORTHO05D004553 3.6e-20 103.6 411 28.2
Migut.O00455 Erythranthe guttata HOM05D003923 ORTHO05D004553 3.6e-20 103.6 208 38.9
Duzib116G0286 Durio zibethinus HOM05D003923 ORTHO05D004553 4.6e-20 103.2 354 31.9
BolC5t30833H Brassica oleracea HOM05D003923 ORTHO05D004553 7.9e-20 102.4 410 28.0
Ca_15243_v3 Cicer arietinum L. HOM05D003923 ORTHO05D004553 7.9e-20 102.4 434 30.4
Sed0005628 Sechium edule HOM05D003923 ORTHO05D004553 7.9e-20 102.4 401 28.2
Migut.N02906 Erythranthe guttata HOM05D003923 ORTHO05D004553 1.8e-19 101.3 406 33.0
BcaC08g45438 Brassica carinata HOM05D003923 ORTHO05D004553 3.9e-19 100.1 431 31.3
C06p30680 Brassica napus HOM05D003923 ORTHO05D004553 3.9e-19 100.1 431 31.3
BolC6t38232H Brassica oleracea HOM05D003923 ORTHO05D004553 3.9e-19 100.1 431 31.3
VMungo1309G2192 Vigna mungo HOM05D003923 ORTHO05D004553 3.9e-19 100.1 189 41.3
Sp1g19740 Schrenkiella parvula HOM05D003923 ORTHO05D004553 6.7e-19 99.4 418 28.0
AT1G22230 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 1.5e-18 98.2 416 28.8
ECA246G1087 Erigeron canadensis HOM05D003923 ORTHO05D004553 7.4e-18 95.9 417 28.5
BcaB07g32245 Brassica carinata HOM05D003923 ORTHO05D004553 1.3e-17 95.1 413 26.9
Ah.05g170190 Amaranthus hybridus HOM05D003923 ORTHO05D004553 3.7e-17 93.6 197 37.6
ATR0564G364 Amborella trichopoda HOM05D003923 ORTHO05D004553 3.7e-17 93.6 383 28.2
Carub.0001s2178 Capsella rubella HOM05D003923 ORTHO05D004553 4.8e-17 93.2 428 27.8
BraA07t29207Z Brassica rapa HOM05D003923 ORTHO05D004553 6.3e-17 92.8 404 28.7
Dinv13027 Davidia involucrata HOM05D003923 ORTHO05D004553 1.8e-16 91.3 242 33.1
unitig_744.g24093 Utricularia gibba HOM05D003923 ORTHO05D004553 2.4e-16 90.9 379 25.9
AUR62027732 Chenopodium quinoa HOM05D003923 ORTHO05D004553 3.1e-16 90.5 259 32.0
unitig_21.g20601 Utricularia gibba HOM05D003923 ORTHO05D004553 3.1e-16 90.5 412 27.2
A07p14630 Brassica napus HOM05D003923 ORTHO05D004553 6.9e-16 89.4 404 28.7
Sed0003612 Sechium edule HOM05D003923 ORTHO05D004553 6.9e-16 89.4 382 27.0
Solyc04g072940.4 Solanum lycopersicum HOM05D003923 ORTHO05D004553 1.2e-15 88.6 372 30.6
Lalb_Chr04g0253191 Lupinus albus HOM05D003923 ORTHO05D004553 1.3e-14 85.1 391 27.9
BcaC06g34942 Brassica carinata HOM05D003923 ORTHO05D004553 1.7e-14 84.7 404 27.0
HanXRQChr05g0162921 Helianthus annuus HOM05D003923 ORTHO05D004553 2.9e-14 84.0 198 33.3
ClCG08G011040 Citrullus lanatus HOM05D003923 ORTHO05D004553 3.8e-14 83.6 318 33.3
Thhalv10008264m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 3.8e-14 83.6 425 26.1
MELO3C011359.2 Cucumis melo HOM05D003923 ORTHO05D004553 3.2e-13 80.5 423 27.0
CsaV3_2G024220 Cucumis sativus L. HOM05D003923 ORTHO05D004553 7.2e-13 79.3 428 27.1
Sed0022190 Sechium edule HOM05D003923 ORTHO05D004553 7.2e-13 79.3 395 27.1
Zm00001eb098670 Zea mays HOM05D003923 ORTHO05D004553 7.2e-13 79.3 419 26.3
SEGI_41423 Sequoiadendron giganteum HOM05D003923 ORTHO05D004553 4.7e-12 76.6 323 26.9
C07p21520 Brassica napus HOM05D003923 ORTHO05D004553 2.3e-11 74.3 401 25.7
Zm00001eb311240 Zea mays HOM05D003923 ORTHO05D004553 3.3e-10 70.5 415 24.8
Aa31LG7G6170 Aethionema arabicum HOM05D003923 ORTHO05D004553 1.7e-09 68.2 389 27.8
Zm00001eb255200 Zea mays HOM05D003923 ORTHO05D004553 2.2e-09 67.8 411 26.5
Atru.chr13.1213 Acer truncatum HOM05D003923 ORTHO05D004553 2.8e-09 67.4 352 30.4
SalBow7G0529 Salvia bowleyana HOM05D003923 ORTHO05D004553 4.8e-09 66.6 171 33.9
BolC7t42678H Brassica oleracea HOM05D003923 ORTHO05D004553 6.3e-09 66.2 206 32.0
A07p43420 Brassica napus HOM05D003923 ORTHO05D004553 5.3e-08 63.2 108 44.4
CDE12G0356 Ceratophyllum demersum HOM05D003923 ORTHO05D004553 3.5e-07 60.5 199 29.6
ATR0122G028 Amborella trichopoda HOM05D003923 ORTHO05D004553 5.0e-06 56.6 364 24.7
Zm00001eb194180 Zea mays HOM05D003923 ORTHO05D004553 6.5e-06 56.2 117 40.2


User provided reference genes

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