Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G2349 Papaver somniferum HOM05D007837 ORTHO05D009965 0.0e+00 1081.6 559 100.0
PSO675G4978 Papaver somniferum HOM05D007837 ORTHO05D009965 1.2e-295 1019.2 559 94.1
CSS0012057 Camellia sinensis var. sinensis HOM05D007837 ORTHO05D009965 7.4e-181 637.9 570 60.2
Actinidia33640 Actinidia chinensis HOM05D007837 ORTHO05D009965 2.2e-177 626.3 576 58.5
Dinv06743 Davidia involucrata HOM05D007837 ORTHO05D009965 3.2e-176 622.5 555 61.4
Lj1A1155T50 Lonicera japonica HOM05D007837 ORTHO05D009965 5.1e-174 615.1 561 59.2
Aqoxy3G03542 Aquilegia oxysepala HOM05D007837 ORTHO05D009965 2.7e-167 592.8 445 69.9
Potri.011G153800 Populus trichocarpa HOM05D007837 ORTHO05D009965 4.7e-167 592.0 561 57.8
Duzib160G0902 Durio zibethinus HOM05D007837 ORTHO05D009965 5.1e-166 588.6 567 57.1
Manes.16G061400 Manihot esculenta HOM05D007837 ORTHO05D009965 1.1e-165 587.4 584 57.4
Dinv15942 Davidia involucrata HOM05D007837 ORTHO05D009965 2.6e-165 586.3 573 56.5
Atru.chr10.652 Acer truncatum HOM05D007837 ORTHO05D009965 3.3e-165 585.9 567 57.7
Thecc.06G015600 Theobroma cacao HOM05D007837 ORTHO05D009965 2.2e-161 573.2 525 59.2
Ciclev10017939m.g Citrus clementina HOM05D007837 ORTHO05D009965 2.9e-161 572.8 424 70.0
DCAR_001340 Daucus carota HOM05D007837 ORTHO05D009965 3.8e-161 572.4 572 55.9
TWI15G0587 Tripterygium wilfordii HOM05D007837 ORTHO05D009965 3.2e-160 569.3 566 55.7
Gohir.A05G113000 Gossypium hirsutum HOM05D007837 ORTHO05D009965 3.0e-158 562.8 574 54.9
Gorai.009G117500 Gossypium raimondii HOM05D007837 ORTHO05D009965 3.0e-158 562.8 570 55.6
Gohir.D05G113500 Gossypium hirsutum HOM05D007837 ORTHO05D009965 8.8e-158 561.2 570 55.3
Prupe.4G103700 Prunus persica HOM05D007837 ORTHO05D009965 8.8e-158 561.2 557 56.4
COL.COLO4_22875 Corchorus olitorius HOM05D007837 ORTHO05D009965 3.3e-157 559.3 558 56.1
FAN21G3089 Fragaria x ananassa HOM05D007837 ORTHO05D009965 1.0e-153 547.7 425 65.6
PGR042G0413 Punica granatum HOM05D007837 ORTHO05D009965 1.1e-152 544.3 566 54.8
TAR626G0822 Trochodendron aralioides HOM05D007837 ORTHO05D009965 1.9e-152 543.5 570 55.1
FvH4_3g11620 Fragaria vesca HOM05D007837 ORTHO05D009965 4.2e-152 542.3 576 53.6
RcHm_v2.0_Chr5g0018641 Rosa chinensis HOM05D007837 ORTHO05D009965 1.2e-151 540.8 580 53.8
FAN25G3065 Fragaria x ananassa HOM05D007837 ORTHO05D009965 6.7e-150 535.0 474 60.1
SalBow8G2294 Salvia bowleyana HOM05D007837 ORTHO05D009965 2.6e-149 533.1 562 53.9
SalBow8G2521 Salvia bowleyana HOM05D007837 ORTHO05D009965 2.6e-149 533.1 562 53.9
Migut.M01930 Erythranthe guttata HOM05D007837 ORTHO05D009965 3.7e-148 529.3 552 53.3
QL05p065337 Quercus lobata HOM05D007837 ORTHO05D009965 3.1e-147 526.2 601 51.7
MD05G1261900 Malus domestica HOM05D007837 ORTHO05D009965 9.1e-147 524.6 553 54.4
FAN16G2143 Fragaria x ananassa HOM05D007837 ORTHO05D009965 2.9e-145 519.6 485 58.6
CANSAT35G1648 Cannabis sativa HOM05D007837 ORTHO05D009965 6.5e-145 518.5 573 52.0
MD10G1240200 Malus domestica HOM05D007837 ORTHO05D009965 1.1e-144 517.7 550 53.6
Cc09_g07320 Coffea canephora HOM05D007837 ORTHO05D009965 8.0e-143 511.5 441 60.3
Lj3g0012849 Lotus japonicus HOM05D007837 ORTHO05D009965 1.8e-139 500.4 555 49.9
Glyma.12G002600 Glycine max HOM05D007837 ORTHO05D009965 1.0e-137 494.6 559 50.4
MBI18_g28215_MAGBIO Magnolia biondii HOM05D007837 ORTHO05D009965 2.1e-135 486.9 483 56.1
Nitab4.5_0001219g0090 Nicotiana tabacum HOM05D007837 ORTHO05D009965 2.8e-132 476.5 631 46.9
Sed0012016 Sechium edule HOM05D007837 ORTHO05D009965 1.8e-131 473.8 513 53.8
ATR1098G128 Amborella trichopoda HOM05D007837 ORTHO05D009965 3.3e-128 463.0 559 47.8
Nitab4.5_0011721g0030 Nicotiana tabacum HOM05D007837 ORTHO05D009965 2.8e-127 459.9 664 44.3
Peaxi162Scf00195g00413 Petunia axillaris HOM05D007837 ORTHO05D009965 3.6e-127 459.5 628 46.0
ClCG01G025810 Citrullus lanatus HOM05D007837 ORTHO05D009965 5.2e-126 455.7 568 49.5
Sopen02g018680 Solanum pennellii HOM05D007837 ORTHO05D009965 9.8e-125 451.4 708 40.7
Phvul.011G003300 Phaseolus vulgaris HOM05D007837 ORTHO05D009965 1.7e-124 450.7 421 55.8
Solyc02g069550.1 Solanum lycopersicum HOM05D007837 ORTHO05D009965 2.9e-124 449.9 708 40.4
Oeu008970.1 Olea europaea HOM05D007837 ORTHO05D009965 5.1e-113 412.5 431 51.5
VMungo1127G0844 Vigna mungo HOM05D007837 ORTHO05D009965 4.0e-110 402.9 421 50.8
Cpa.g.sc192.12 Carica papaya HOM05D007837 ORTHO05D009965 1.2e-106 391.3 424 52.1
MELO3C007007.2 Cucumis melo HOM05D007837 ORTHO05D009965 2.8e-103 380.2 446 49.8
CsaV3_6G053020 Cucumis sativus L. HOM05D007837 ORTHO05D009965 1.1e-102 378.3 443 50.1
arahy.Tifrunner.gnm1.ann1.FUT705 Arachis hypogaea HOM05D007837 ORTHO05D009965 6.6e-97 359.0 351 56.1
arahy.Tifrunner.gnm1.ann1.SA9RL2 Arachis hypogaea HOM05D007837 ORTHO05D009965 1.4e-94 351.3 422 49.1
Potri.001G443025 Populus trichocarpa HOM05D007837 ORTHO05D009965 4.4e-93 346.3 269 66.5
Psat7g145400 Pisum sativum HOM05D007837 ORTHO05D009965 4.6e-90 336.3 294 56.8
SEGI_16109 Sequoiadendron giganteum HOM05D007837 ORTHO05D009965 6.6e-89 332.4 514 40.9
Lsat_1_v5_gn_1_90680 Lactuca sativa HOM05D007837 ORTHO05D001664 2.2e-84 317.4 564 38.3
Medtr4g035250 Medicago truncatula HOM05D007837 ORTHO05D009965 4.3e-80 303.1 421 42.8
GSVIVG01037969001 Vitis vinifera HOM05D007837 ORTHO05D009965 2.1e-74 284.3 217 66.8
AagrBONN_evm.TU.Sc2ySwM_228.3840 Anthoceros agrestis HOM05D007837 ORTHO05D009965 1.1e-67 261.9 529 34.8
SMO118G0556 Selaginella moellendorffii HOM05D007837 ORTHO05D009965 1.6e-66 258.1 481 34.5
TPR.G1949 Trifolium pratense HOM05D007837 ORTHO05D009965 3.6e-58 230.3 184 64.7
TAR633G0058 Trochodendron aralioides HOM05D007837 ORTHO05D009965 7.7e-45 186.0 192 51.6
Haze_05985 Corylus avellana HOM05D007837 ORTHO05D009965 1.0e-36 159.1 131 64.9
TPR.G10794 Trifolium pratense HOM05D007837 ORTHO05D009965 3.8e-36 157.1 155 50.3
GSVIVG01037970001 Vitis vinifera HOM05D007837 ORTHO05D009965 4.0e-33 147.1 102 73.5
Hma1.2p1_0410F.1_g147010 Hydrangea macrophylla HOM05D007837 ORTHO05D009965 1.7e-31 141.7 105 68.6
Medtr4g035220 Medicago truncatula HOM05D007837 ORTHO05D009965 3.7e-31 140.6 120 61.7
Glyma.03G069100 Glycine max HOM05D007837 ORTHO05D009965 3.1e-30 137.5 172 47.1
Sabra11G0145700 Salix brachista HOM05D007837 ORTHO05D009965 4.1e-30 137.1 115 61.7
Oeu008971.1 Olea europaea HOM05D007837 ORTHO05D009965 3.0e-25 120.9 101 62.4
TAR086G0001 Trochodendron aralioides HOM05D007837 ORTHO05D009965 3.1e-22 110.9 68 76.5
TAR365G1222 Trochodendron aralioides HOM05D001154 ORTHO05D010892 1.1e-19 102.4 64 78.1
TAR626G1098 Trochodendron aralioides HOM05D001154 ORTHO05D010892 4.2e-19 100.5 64 76.6
Pp3c11_2120 Physcomitrium patens HOM05D007670 ORTHO05D009646 1.6e-18 98.6 240 30.0
Pp3c10_12340 Physcomitrium patens HOM05D007670 ORTHO05D009646 2.1e-18 98.2 364 26.9
Hma1.2p1_0410F.1_g147000 Hydrangea macrophylla HOM05D007837 ORTHO05D009965 4.0e-17 94.0 205 31.2
Pp3c26_6480 Physcomitrium patens HOM05D007670 ORTHO05D009646 1.5e-16 92.0 234 28.6
Pp3c26_6484 Physcomitrium patens HOM05D007670 ORTHO05D009646 1.5e-16 92.0 234 28.6
SMO263G0007 Selaginella moellendorffii HOM05D007837 ORTHO05D009965 5.7e-16 90.1 247 27.9
MCO10G143 Micromonas commoda HOM05D007837 ORTHO05D009965 7.5e-16 89.7 452 24.1
Pp3c7_23860 Physcomitrium patens HOM05D007670 ORTHO05D009646 9.2e-14 82.8 257 24.1
Ciclev10024352m.g Citrus clementina HOM05D007670 ORTHO05D009646 2.9e-12 77.8 267 27.0
Pp3c18_13530 Physcomitrium patens HOM05D007670 ORTHO05D009646 2.9e-12 77.8 234 26.5
Prupe.5G164600 Prunus persica HOM05D007670 ORTHO05D009646 3.9e-12 77.4 266 26.7
PSO478G3950 Papaver somniferum HOM05D007670 ORTHO05D009646 5.0e-12 77.0 257 28.4
Mapoly0020s0028 Marchantia polymorpha HOM05D007670 ORTHO05D009646 8.6e-12 76.3 281 25.3
FAN08G1903 Fragaria x ananassa HOM05D007670 ORTHO05D009646 1.1e-11 75.9 275 26.2
Phvul.003G205800 Phaseolus vulgaris HOM05D007670 ORTHO05D009646 1.1e-11 75.9 249 27.7
VMungo1215G0346 Vigna mungo HOM05D007670 ORTHO05D009646 1.1e-11 75.9 215 28.8
Cpa.g.sc192.14 Carica papaya HOM05D007837 ORTHO05D009965 1.5e-11 75.5 58 65.5
Zm00001eb388830 Zea mays HOM05D007670 ORTHO05D009646 1.9e-11 75.1 265 25.3
FAN13G0035 Fragaria x ananassa HOM05D007670 ORTHO05D009646 2.5e-11 74.7 266 26.3
Aqoxy3G01244 Aquilegia oxysepala HOM05D007670 ORTHO05D009646 3.3e-11 74.3 274 25.9
ClCG03G003050 Citrullus lanatus HOM05D007670 ORTHO05D009646 3.3e-11 74.3 231 27.7
FvH4_5g06391 Fragaria vesca HOM05D007670 ORTHO05D009646 3.3e-11 74.3 315 26.3
FAN18G1020 Fragaria x ananassa HOM05D007670 ORTHO05D009646 4.3e-11 73.9 264 26.5
TAR362G0005 Trochodendron aralioides HOM05D007837 ORTHO05D009965 4.3e-11 73.9 68 57.4
SEGI_28887 Sequoiadendron giganteum HOM05D007670 ORTHO05D009646 5.6e-11 73.6 225 26.7
Sopen03g031210 Solanum pennellii HOM05D007670 ORTHO05D009646 5.6e-11 73.6 266 27.1
Glyma.05G042100 Glycine max HOM05D007670 ORTHO05D009646 7.3e-11 73.2 253 26.5
ATR0824G010 Amborella trichopoda HOM05D007670 ORTHO05D009646 1.2e-10 72.4 256 28.1
Ca_19420_v3 Cicer arietinum L. HOM05D007670 ORTHO05D009646 1.6e-10 72.0 237 25.3
Gohir.A03G074800 Gossypium hirsutum HOM05D007670 ORTHO05D009646 2.1e-10 71.6 263 25.9
FAN04G2873 Fragaria x ananassa HOM05D007670 ORTHO05D009646 2.8e-10 71.2 264 26.1
TPR.G37476 Trifolium pratense HOM05D007670 ORTHO05D009646 2.8e-10 71.2 235 24.7
TAR371G0483 Trochodendron aralioides HOM05D001154 ORTHO05D010892 2.8e-10 71.2 40 80.0
Cc04_g11380 Coffea canephora HOM05D007670 ORTHO05D009646 3.6e-10 70.9 277 24.5
HPP92_001311 Vanilla planifolia HOM05D007670 ORTHO05D009646 3.6e-10 70.9 268 24.6
MD14G1170500 Malus domestica HOM05D007670 ORTHO05D009646 4.7e-10 70.5 363 24.2
PGR044G2723 Punica granatum HOM05D007670 ORTHO05D009646 4.7e-10 70.5 255 25.5
Actinidia08035 Actinidia chinensis HOM05D007670 ORTHO05D009646 1.0e-09 69.3 270 25.9
COL.COLO4_33501 Corchorus olitorius HOM05D007670 ORTHO05D009646 1.0e-09 69.3 266 24.8
Psat4g061560 Pisum sativum HOM05D007670 ORTHO05D009646 1.4e-09 68.9 221 25.8
Atru.chr9.2593 Acer truncatum HOM05D007670 ORTHO05D009646 1.8e-09 68.6 255 25.5
Nitab4.5_0008913g0020 Nicotiana tabacum HOM05D007670 ORTHO05D009646 1.8e-09 68.6 236 25.8
HPP92_003438 Vanilla planifolia HOM05D001493 ORTHO05D001681 1.8e-09 68.6 296 24.0
arahy.Tifrunner.gnm1.ann1.4HF9FM Arachis hypogaea HOM05D007670 ORTHO05D009646 2.3e-09 68.2 215 27.0
Medtr4g104750 Medicago truncatula HOM05D007670 ORTHO05D009646 2.3e-09 68.2 220 25.5
GSVIVG01007632001 Vitis vinifera HOM05D007670 ORTHO05D009646 2.3e-09 68.2 268 26.5
Pp3c21_7410 Physcomitrium patens HOM05D007670 ORTHO05D009646 3.1e-09 67.8 233 24.0
Manes.06G111300 Manihot esculenta HOM05D007670 ORTHO05D009646 4.0e-09 67.4 228 25.9
PGSC0003DMG400018192 Solanum tuberosum HOM05D007670 ORTHO05D009646 4.0e-09 67.4 265 26.4
arahy.Tifrunner.gnm1.ann1.2S9CTF Arachis hypogaea HOM05D007670 ORTHO05D009646 1.2e-08 65.9 229 25.8
Migut.O00167 Erythranthe guttata HOM05D007670 ORTHO05D009646 1.2e-08 65.9 202 28.2
Eucgr.K02784 Eucalyptus grandis HOM05D007670 ORTHO05D009646 1.5e-08 65.5 269 23.8
RcHm_v2.0_Chr7g0192411 Rosa chinensis HOM05D007670 ORTHO05D009646 1.5e-08 65.5 276 25.4
SEGI_38678 Sequoiadendron giganteum HOM05D007670 ORTHO05D009646 1.5e-08 65.5 118 30.5
TWI39G0169 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 1.5e-08 65.5 257 24.1
ECA246G3610 Erigeron canadensis HOM05D007670 ORTHO05D009646 4.4e-08 63.9 241 23.7
Cfa019228 Carpinus fangiana HOM05D007670 ORTHO05D009646 5.8e-08 63.5 270 23.0
DCAR_007451 Daucus carota HOM05D007670 ORTHO05D009646 5.8e-08 63.5 278 23.4
Lj4g0014046 Lotus japonicus HOM05D007670 ORTHO05D009646 5.8e-08 63.5 221 24.4
Sed0003800 Sechium edule HOM05D007670 ORTHO05D009646 7.5e-08 63.2 231 27.7
Nitab4.5_0002522g0060 Nicotiana tabacum HOM05D007670 ORTHO05D009646 9.8e-08 62.8 278 25.2
TAR629G1516 Trochodendron aralioides HOM05D007670 ORTHO05D009646 1.7e-07 62.0 239 26.4
TWI23G1319 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 2.2e-07 61.6 256 24.2
Thecc.03G116000 Theobroma cacao HOM05D007670 ORTHO05D009646 2.9e-07 61.2 254 23.6
MELO3C002304.2 Cucumis melo HOM05D007670 ORTHO05D009646 3.7e-07 60.8 195 27.7
Potri.015G084300 Populus trichocarpa HOM05D007670 ORTHO05D009646 3.7e-07 60.8 244 24.2
Os01g0909300 Oryza sativa ssp. japonica HOM05D007670 ORTHO05D009646 8.3e-07 59.7 129 29.5
Lsat_1_v5_gn_5_13921 Lactuca sativa HOM05D007670 ORTHO05D009646 1.4e-06 58.9 240 23.8
Gohir.D03G101500 Gossypium hirsutum HOM05D007670 ORTHO05D009646 2.4e-06 58.2 128 27.3
CiPaw.12G031800 Carya illinoinensis HOM05D007670 ORTHO05D009646 3.2e-06 57.8 196 24.5
Gorai.003G106900 Gossypium raimondii HOM05D007670 ORTHO05D009646 3.2e-06 57.8 128 27.3
Sabra11G0145800 Salix brachista HOM05D007837 ORTHO05D009965 4.1e-06 57.4 149 30.9
CANSAT80G0945 Cannabis sativa HOM05D007670 ORTHO05D009646 5.4e-06 57.0 222 23.9


User provided reference genes

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