Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G2287 Papaver somniferum HOM05D004554 ORTHO05D005360 3.4e-71 271.6 136 100.0
PSO675G8776 Papaver somniferum HOM05D004554 ORTHO05D005360 9.9e-71 270.0 136 99.3
Dinv30578 Davidia involucrata HOM05D004554 ORTHO05D005360 8.1e-65 250.4 136 91.2
TWI31G0401 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 1.8e-64 249.2 136 90.4
MSTRG.4713 Avicennia marina HOM05D004554 ORTHO05D005360 2.4e-64 248.8 136 90.4
CSS0011930 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 3.1e-64 248.4 136 91.2
Ciclev10022803m.g Citrus clementina HOM05D004554 ORTHO05D005360 3.1e-64 248.4 136 90.4
PSO170G6065 Papaver somniferum HOM05D004554 ORTHO05D005360 3.1e-64 248.4 136 88.2
PGSC0003DMG402028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 3.1e-64 248.4 136 90.4
CANSAT56G2605 Cannabis sativa HOM05D004554 ORTHO05D005360 4.0e-64 248.1 136 89.7
Migut.D01058 Erythranthe guttata HOM05D004554 ORTHO05D005360 4.0e-64 248.1 136 89.7
Thecc.04G171500 Theobroma cacao HOM05D004554 ORTHO05D005360 4.0e-64 248.1 136 90.4
Potri.003G183400 Populus trichocarpa HOM05D004554 ORTHO05D005360 8.9e-64 246.9 136 89.0
CARHR074020 Cardamine hirsuta HOM05D004554 ORTHO05D005360 1.2e-63 246.5 136 89.0
CiPaw.03G115100 Carya illinoinensis HOM05D004554 ORTHO05D005360 1.2e-63 246.5 136 89.7
Duzib151G1169 Durio zibethinus HOM05D004554 ORTHO05D005360 1.2e-63 246.5 136 89.7
Hund00544 Selenicereus undatus HOM05D004554 ORTHO05D005360 1.2e-63 246.5 136 88.2
AL2G40970 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 1.5e-63 246.1 136 89.0
AL6G52910 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 1.5e-63 246.1 136 89.0
AT1G80500 Arabidopsis thaliana HOM05D004554 ORTHO05D005360 1.5e-63 246.1 136 89.0
Duzib268G0645 Durio zibethinus HOM05D004554 ORTHO05D005360 1.5e-63 246.1 136 89.0
ECA232G3015 Erigeron canadensis HOM05D004554 ORTHO05D005360 1.5e-63 246.1 136 88.2
Gohir.D02G111000 Gossypium hirsutum HOM05D004554 ORTHO05D005360 2.0e-63 245.7 136 89.0
Gorai.005G125900 Gossypium raimondii HOM05D004554 ORTHO05D005360 2.0e-63 245.7 136 89.0
CSS0043216 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 2.6e-63 245.4 136 89.0
Potri.001G043400 Populus trichocarpa HOM05D004554 ORTHO05D005360 2.6e-63 245.4 136 89.0
Hma1.2p1_0515F.1_g170190 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 4.4e-63 244.6 136 89.0
Carub.0002s1001 Capsella rubella HOM05D004554 ORTHO05D005360 5.8e-63 244.2 136 88.2
MELO3C023193.2 Cucumis melo HOM05D004554 ORTHO05D005360 5.8e-63 244.2 136 87.5
Glyma.04G207300 Glycine max HOM05D004554 ORTHO05D005360 7.6e-63 243.8 136 88.2
Gohir.A02G092800 Gossypium hirsutum HOM05D004554 ORTHO05D005360 9.9e-63 243.4 136 88.2
Oeu052276.1 Olea europaea HOM05D004554 ORTHO05D005360 9.9e-63 243.4 136 89.0
Psat5g058840 Pisum sativum HOM05D004554 ORTHO05D005360 9.9e-63 243.4 136 87.5
TPR.G7873 Trifolium pratense HOM05D004554 ORTHO05D005360 9.9e-63 243.4 136 87.5
Actinidia08808 Actinidia chinensis HOM05D004554 ORTHO05D005360 1.3e-62 243.0 136 87.5
Duzib212G0633 Durio zibethinus HOM05D004554 ORTHO05D005360 1.3e-62 243.0 136 86.8
Nitab4.5_0000620g0010 Nicotiana tabacum HOM05D004554 ORTHO05D005360 1.7e-62 242.7 138 89.1
Phvul.009G152000 Phaseolus vulgaris HOM05D004554 ORTHO05D005360 1.7e-62 242.7 136 87.5
PGR119G2244 Punica granatum HOM05D004554 ORTHO05D005360 1.7e-62 242.7 136 88.2
Sp5g35300 Schrenkiella parvula HOM05D004554 ORTHO05D005360 1.7e-62 242.7 136 87.5
THA.LOC104819505 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 1.7e-62 242.7 136 87.5
Sed0018246 Sechium edule HOM05D004554 ORTHO05D005360 2.2e-62 242.3 136 86.8
Eucgr.E03470 Eucalyptus grandis HOM05D004554 ORTHO05D005360 2.9e-62 241.9 136 87.5
Glyma.06G158300 Glycine max HOM05D004554 ORTHO05D005360 4.9e-62 241.1 136 86.8
Nitab4.5_0005235g0030 Nicotiana tabacum HOM05D004554 ORTHO05D005360 4.9e-62 241.1 138 88.4
Solyc06g068030.3 Solanum lycopersicum HOM05D004554 ORTHO05D005360 4.9e-62 241.1 138 88.4
Sp2g09550 Schrenkiella parvula HOM05D004554 ORTHO05D005360 1.1e-61 240.0 136 86.8
Lj1g0025297 Lotus japonicus HOM05D004554 ORTHO05D005360 1.9e-61 239.2 136 85.3
CDE01G0639 Ceratophyllum demersum HOM05D004554 ORTHO05D005360 2.4e-61 238.8 136 86.8
Prupe.1G580600 Prunus persica HOM05D004554 ORTHO05D005360 2.4e-61 238.8 137 87.6
CSS0017610 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 3.2e-61 238.4 159 78.6
RcHm_v2.0_Chr1g0339521 Rosa chinensis HOM05D004554 ORTHO05D005360 3.2e-61 238.4 137 87.6
THA.LOC104807163 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 3.2e-61 238.4 136 86.8
Manes.04G101300 Manihot esculenta HOM05D004554 ORTHO05D005360 4.1e-61 238.0 136 86.0
CiPaw.04G077100 Carya illinoinensis HOM05D004554 ORTHO05D005360 5.4e-61 237.7 136 84.6
Zm00001eb111730 Zea mays HOM05D004554 ORTHO05D005360 7.1e-61 237.3 136 84.6
Manes.11G068800 Manihot esculenta HOM05D004554 ORTHO05D005360 1.2e-60 236.5 136 86.0
SEGI_00661 Sequoiadendron giganteum HOM05D004554 ORTHO05D005360 1.6e-60 236.1 136 84.6
Os02g0613600 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 3.5e-60 235.0 136 83.8
Lsat_1_v5_gn_4_105840 Lactuca sativa HOM05D004554 ORTHO05D005360 4.6e-60 234.6 137 83.9
BraA09t37732Z Brassica rapa HOM05D004554 ORTHO05D005360 3.0e-59 231.9 149 79.2
Zm00001eb331160 Zea mays HOM05D004554 ORTHO05D005360 5.1e-59 231.1 137 84.7
CSS0029734 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 6.6e-59 230.7 148 79.7
vmacro21051 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 1.1e-58 229.9 153 77.1
HanXRQChr16g0500531 Helianthus annuus HOM05D004554 ORTHO05D005360 1.5e-58 229.6 172 70.3
AagrBONN_evm.TU.Sc2ySwM_362.569 Anthoceros agrestis HOM05D004554 ORTHO05D005360 6.9e-56 220.7 136 76.5
Mapoly0010s0129 Marchantia polymorpha HOM05D004554 ORTHO05D005360 9.0e-56 220.3 136 76.5
Pp3c14_6180 Physcomitrium patens HOM05D004554 ORTHO05D005360 1.2e-55 219.9 136 77.2
FAN10G0691 Fragaria x ananassa HOM05D004554 ORTHO05D005360 2.0e-55 219.2 189 64.6
Gorai.006G230100 Gossypium raimondii HOM05D004554 ORTHO05D005360 2.0e-55 219.2 136 80.9
VMungo1309G1053 Vigna mungo HOM05D004554 ORTHO05D005360 4.4e-55 218.0 136 81.6
Gohir.D09G206200 Gossypium hirsutum HOM05D004554 ORTHO05D005360 7.6e-55 217.2 136 80.1
Medtr1g102650 Medicago truncatula HOM05D004554 ORTHO05D005360 3.8e-54 214.9 169 67.5
A09p21270 Brassica napus HOM05D003109 ORTHO05D003578 4.9e-54 214.5 139 77.7
Peaxi162Scf00207g00743 Petunia axillaris HOM05D004554 ORTHO05D005360 2.5e-50 202.2 136 76.5
Os04g0503800 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 1.6e-49 199.5 117 81.2
Hma1.2p1_1324F.1_g275710 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 5.3e-48 194.5 124 80.6
Gohir.A09G212650 Gossypium hirsutum HOM05D004554 ORTHO05D005360 9.0e-48 193.7 120 81.7
Sc10g0005760 Simmondsia chinensis HOM05D004554 ORTHO05D005360 8.4e-46 187.2 105 86.7
TWI75G0475 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 9.3e-45 183.7 106 84.0
Sc25g0002650 Simmondsia chinensis HOM05D004554 ORTHO05D005360 1.2e-44 183.3 105 84.8
Aa31sc43G10 Aethionema arabicum HOM05D004554 ORTHO05D005360 1.0e-43 180.3 136 71.3
vmacro16909 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 1.0e-43 180.3 136 72.1
Sabra01G0029900 Salix brachista HOM05D004554 ORTHO05D005360 8.7e-43 177.2 136 69.9
Thhalv10019800m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 1.9e-42 176.0 169 59.8
SGA_v2.0_scaffold16G07612 Striga asiatica HOM05D004554 ORTHO05D005360 3.7e-41 171.8 107 80.4
FAN01G0304 Fragaria x ananassa HOM05D004554 ORTHO05D007400 8.1e-41 170.6 138 67.4
SGA_v2.0_scaffold117G32370 Striga asiatica HOM05D004554 ORTHO05D005360 9.9e-39 163.7 136 66.2
unitig_899.g14783 Utricularia gibba HOM05D004554 ORTHO05D005360 9.9e-39 163.7 136 65.4
BcaB07g30930 Brassica carinata HOM05D004554 ORTHO05D005360 1.4e-37 159.8 136 63.2
Lj1g0023737 Lotus japonicus HOM05D004554 ORTHO05D005360 1.9e-37 159.5 156 57.1
Thhalv10001067m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 4.2e-37 158.3 80 96.2
Carub.0002s0990 Capsella rubella HOM05D004554 ORTHO05D005360 1.8e-35 152.9 80 93.8
MCO03G231 Micromonas commoda HOM05D004554 ORTHO05D005360 1.5e-31 139.8 142 45.1
GSVIVG01017278001 Vitis vinifera HOM05D004554 ORTHO05D005360 4.5e-31 138.3 82 81.7
PRCOL_00001690 Prasinoderma coloniale HOM05D004554 ORTHO05D005360 1.0e-30 137.1 128 49.2
SMO244G0023 Selaginella moellendorffii HOM05D004554 ORTHO05D005360 1.7e-30 136.3 155 47.7
Rhsim08G0215600 Rhododendron simsii HOM05D004554 ORTHO05D005360 2.9e-30 135.6 77 87.0
HanXRQChr09g0274941 Helianthus annuus HOM05D004554 ORTHO05D005360 4.9e-30 134.8 77 85.7
Atru.chr2.1839 Acer truncatum HOM05D004554 ORTHO05D005360 6.5e-30 134.4 81 82.7
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 6.5e-30 134.4 136 48.5
SalBow3G2596 Salvia bowleyana HOM05D004554 ORTHO05D005360 6.5e-30 134.4 77 85.7
Sopen06g025310 Solanum pennellii HOM05D004554 ORTHO05D005360 6.5e-30 134.4 82 81.7
Lj9P502T35 Lonicera japonica HOM05D004554 ORTHO05D005360 8.4e-30 134.0 87 77.0
FvH4_7g07440 Fragaria vesca HOM05D004554 ORTHO05D005360 1.1e-29 133.7 77 84.4
FAN06G4122 Fragaria x ananassa HOM05D004554 ORTHO05D005360 1.1e-29 133.7 77 84.4
PGSC0003DMG401028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 1.1e-29 133.7 82 81.7
QL06p045297 Quercus lobata HOM05D004554 ORTHO05D005360 1.4e-29 133.3 77 85.7
SalBow2G1085 Salvia bowleyana HOM05D004554 ORTHO05D005360 1.4e-29 133.3 82 80.5
COL.COLO4_28385 Corchorus olitorius HOM05D004554 ORTHO05D005360 1.9e-29 132.9 77 84.4
ClCG02G000050 Citrullus lanatus HOM05D004554 ORTHO05D005360 2.5e-29 132.5 77 83.1
CsaV3_2G019710 Cucumis sativus L. HOM05D004554 ORTHO05D005360 2.5e-29 132.5 77 83.1
QL10p039943 Quercus lobata HOM05D004554 ORTHO05D005360 2.5e-29 132.5 77 84.4
CAN.G395.49 Capsicum annuum HOM05D004554 ORTHO05D005360 3.2e-29 132.1 77 84.4
ATR0138G017 Amborella trichopoda HOM05D004554 ORTHO05D005360 5.5e-29 131.3 76 85.5
arahy.Tifrunner.gnm1.ann1.HM0BYB Arachis hypogaea HOM05D004554 ORTHO05D005360 7.1e-29 131.0 77 83.1
arahy.Tifrunner.gnm1.ann1.NV3HYF Arachis hypogaea HOM05D004554 ORTHO05D005360 7.1e-29 131.0 77 83.1
arahy.Tifrunner.gnm1.ann1.YS1HQ5 Arachis hypogaea HOM05D004554 ORTHO05D005360 7.1e-29 131.0 77 83.1
Oeu053426.1 Olea europaea HOM05D004554 ORTHO05D005360 7.1e-29 131.0 77 84.4
Rhsim12G0192700 Rhododendron simsii HOM05D004554 ORTHO05D005360 9.3e-29 130.6 77 83.1
Ah.11g047570 Amaranthus hybridus HOM05D004554 ORTHO05D005360 1.2e-28 130.2 113 60.2
MD08G1243100 Malus domestica HOM05D004554 ORTHO05D005360 1.2e-28 130.2 77 83.1
MD15G1436700 Malus domestica HOM05D004554 ORTHO05D005360 1.2e-28 130.2 77 83.1
arahy.Tifrunner.gnm1.ann1.Z4TQX9 Arachis hypogaea HOM05D004554 ORTHO05D005360 1.6e-28 129.8 77 81.8
FAN03G1590 Fragaria x ananassa HOM05D004554 ORTHO05D005360 1.6e-28 129.8 77 81.8
Lalb_Chr08g0237951 Lupinus albus HOM05D004554 ORTHO05D005360 1.6e-28 129.8 80 78.8
BcaC04g21821 Brassica carinata HOM05D004554 ORTHO05D005360 2.1e-28 129.4 82 75.6
BolC9t55589H Brassica oleracea HOM05D004554 ORTHO05D005360 2.1e-28 129.4 82 75.6
Cc02_g38630 Coffea canephora HOM05D004554 ORTHO05D005360 2.1e-28 129.4 77 83.1
Hund06576 Selenicereus undatus HOM05D004554 ORTHO05D005360 2.7e-28 129.0 77 81.8
A07p45180 Brassica napus HOM05D004554 ORTHO05D005360 6.0e-28 127.9 77 80.5
C06p54030 Brassica napus HOM05D004554 ORTHO05D005360 6.0e-28 127.9 77 80.5
BolC6t40416H Brassica oleracea HOM05D004554 ORTHO05D005360 6.0e-28 127.9 77 80.5
BraA07t32021Z Brassica rapa HOM05D004554 ORTHO05D005360 6.0e-28 127.9 77 80.5
Lsat_1_v5_gn_5_132260 Lactuca sativa HOM05D004554 ORTHO05D005360 1.8e-27 126.3 126 57.1
EL10Ac6g14261 Beta vulgaris HOM05D004554 ORTHO05D005360 2.3e-27 125.9 75 82.7
Rhsim12G0192800 Rhododendron simsii HOM05D004554 ORTHO05D005360 1.1e-26 123.6 60 96.7
Eucgr.L03064 Eucalyptus grandis HOM05D004554 ORTHO05D005360 1.3e-25 120.2 68 85.3
DCAR_025490 Daucus carota HOM05D004554 ORTHO05D005360 8.2e-25 117.5 74 75.7
Atru.chr2.1838 Acer truncatum HOM05D004554 ORTHO05D005360 1.2e-23 113.6 56 96.4
Cc02_g38640 Coffea canephora HOM05D004554 ORTHO05D005360 1.2e-23 113.6 56 96.4
Lalb_Chr08g0237961 Lupinus albus HOM05D004554 ORTHO05D005360 1.2e-23 113.6 56 96.4
CsaV3_2G019720 Cucumis sativus L. HOM05D004554 ORTHO05D005360 2.6e-23 112.5 56 92.9
HanXRQChr09g0274931 Helianthus annuus HOM05D004554 ORTHO05D005360 3.4e-23 112.1 56 92.9
Carub.0002s2706 Capsella rubella HOM05D004554 ORTHO05D005360 4.5e-23 111.7 56 96.4
Lj5A69T38 Lonicera japonica HOM05D004554 ORTHO05D005360 4.5e-23 111.7 116 56.9
MD08G1243200 Malus domestica HOM05D004554 ORTHO05D005360 4.5e-23 111.7 56 94.6
MD15G1436800 Malus domestica HOM05D004554 ORTHO05D005360 4.5e-23 111.7 56 94.6
Sed0002995 Sechium edule HOM05D004554 ORTHO05D005360 1.9e-21 106.3 110 53.6
CBR_g36380 Chara braunii HOM05D004554 ORTHO05D005360 5.1e-19 98.2 75 60.0
Ca_17005_v3 Cicer arietinum L. HOM05D004554 ORTHO05D005360 1.9e-18 96.3 57 80.7
Medtr3g097015 Medicago truncatula HOM05D004554 ORTHO05D005360 2.5e-18 95.9 56 82.1
TAR626G1579 Trochodendron aralioides HOM05D004554 ORTHO05D005360 7.4e-18 94.4 50 90.0
C09p27060 Brassica napus HOM05D004554 ORTHO05D005360 1.7e-17 93.2 76 60.5
RcHm_v2.0_Chr2g0154941 Rosa chinensis HOM05D004554 ORTHO05D005360 2.2e-14 82.8 44 86.4
arahy.Tifrunner.gnm1.ann1.MTW2QA Arachis hypogaea HOM05D004554 ORTHO05D005360 9.4e-13 77.4 44 81.8
Haze_26443 Corylus avellana HOM05D000849 ORTHO05D005360 3.9e-11 72.0 126 34.1
arahy.Tifrunner.gnm1.ann1.QTZM33 Arachis hypogaea HOM05D004554 ORTHO05D005360 2.2e-09 66.2 41 80.5
QL11p051435 Quercus lobata HOM05D004554 ORTHO05D005360 5.0e-06 55.1 29 86.2
Cpa.g.c40005 Carica papaya HOM05D004554 ORTHO05D005360 8.5e-06 54.3 25 92.0


User provided reference genes

Program Settings