Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G2216 Papaver somniferum HOM05D004164 ORTHO05D004891 1.5e-110 402.9 203 100.0
PSO781G0333 Papaver somniferum HOM05D004164 ORTHO05D004891 1.5e-99 366.3 197 93.9
PSO063G3797 Papaver somniferum HOM05D004164 ORTHO05D004891 8.6e-87 323.9 198 80.8
PSO832G0925 Papaver somniferum HOM05D004164 ORTHO05D004891 1.1e-86 323.6 197 80.7
PSO782G1386 Papaver somniferum HOM05D004164 ORTHO05D004891 3.3e-86 322.0 197 79.7
PSO173G0010 Papaver somniferum HOM05D004164 ORTHO05D004891 1.9e-78 296.2 197 75.1
Nn3g21861 Nelumbo nucifera HOM05D004164 ORTHO05D004891 8.9e-76 287.3 197 69.0
TAR365G1146 Trochodendron aralioides HOM05D004164 ORTHO05D004891 1.3e-74 283.5 200 68.0
PSO761G0549 Papaver somniferum HOM05D004164 ORTHO05D004891 7.1e-73 277.7 199 69.3
PSO646G0001 Papaver somniferum HOM05D004164 ORTHO05D004891 1.6e-72 276.6 179 76.0
Nn4g25427 Nelumbo nucifera HOM05D004164 ORTHO05D004891 2.8e-69 265.8 197 64.0
MBI18_g40410_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 5.2e-68 261.5 196 63.3
MBI18_g36466_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 1.7e-66 256.5 180 66.7
PSO832G1962 Papaver somniferum HOM05D004164 ORTHO05D004891 1.1e-65 253.8 196 62.8
PSO210G5660 Papaver somniferum HOM05D004164 ORTHO05D004891 1.6e-64 250.0 197 62.4
PSO507G0030 Papaver somniferum HOM05D004164 ORTHO05D004891 1.6e-64 250.0 197 61.9
PSO507G0017 Papaver somniferum HOM05D004164 ORTHO05D004891 6.0e-64 248.1 196 59.7
PSO761G0590 Papaver somniferum HOM05D004164 ORTHO05D004891 5.1e-63 245.0 197 61.9
PSO832G4194 Papaver somniferum HOM05D004164 ORTHO05D004891 4.3e-62 241.9 196 59.2
PSO210G6256 Papaver somniferum HOM05D004164 ORTHO05D004891 1.6e-61 240.0 196 59.7
PSO832G2156 Papaver somniferum HOM05D004164 ORTHO05D004891 4.7e-61 238.4 196 58.2
Aqoxy2G03733 Aquilegia oxysepala HOM05D004164 ORTHO05D004891 8.9e-60 234.2 203 57.1
PSO761G0410 Papaver somniferum HOM05D004164 ORTHO05D004891 2.4e-57 226.1 182 59.9
Lj4g0000280 Lotus japonicus HOM05D004164 ORTHO05D004891 4.0e-52 208.8 195 52.8
TPR.G10321 Trifolium pratense HOM05D004164 ORTHO05D004891 7.6e-51 204.5 195 53.3
Duzib132G1201 Durio zibethinus HOM05D004164 ORTHO05D004891 4.9e-50 201.8 200 52.5
HanXRQChr10g0291731 Helianthus annuus HOM05D004164 ORTHO05D004891 4.9e-50 201.8 195 52.3
VMungo0540G2402 Vigna mungo HOM05D004164 ORTHO05D004891 4.9e-50 201.8 197 52.3
arahy.Tifrunner.gnm1.ann1.XH6BES Arachis hypogaea HOM05D004164 ORTHO05D004891 6.4e-50 201.4 195 51.3
BcaC01g02680 Brassica carinata HOM05D004164 ORTHO05D004891 1.1e-49 200.7 194 52.1
BolC3t18463H Brassica oleracea HOM05D004164 ORTHO05D004891 1.1e-49 200.7 194 52.1
C03p62030 Brassica napus HOM05D004164 ORTHO05D004891 1.4e-49 200.3 194 52.1
Lj6g0000010 Lotus japonicus HOM05D004164 ORTHO05D004891 1.9e-49 199.9 194 50.0
TAR381G0722 Trochodendron aralioides HOM05D004164 ORTHO05D004891 3.2e-49 199.1 194 51.0
Ca_16502_v3 Cicer arietinum L. HOM05D004164 ORTHO05D004891 4.2e-49 198.7 196 52.6
Dinv24178 Davidia involucrata HOM05D004164 ORTHO05D004891 4.2e-49 198.7 194 51.0
Eucgr.G00847 Eucalyptus grandis HOM05D004164 ORTHO05D004891 4.2e-49 198.7 195 51.8
Glyma.08G178100 Glycine max HOM05D004164 ORTHO05D004891 5.4e-49 198.4 195 51.8
BcaB02g09775 Brassica carinata HOM05D004164 ORTHO05D004891 7.1e-49 198.0 194 51.5
Thhalv10004559m.g Eutrema salsugineum HOM05D004164 ORTHO05D004891 7.1e-49 198.0 194 51.5
FvH4_5g07040 Fragaria vesca HOM05D004164 ORTHO05D004891 7.1e-49 198.0 195 50.8
FAN18G3873 Fragaria x ananassa HOM05D004164 ORTHO05D004891 7.1e-49 198.0 195 50.8
Gorai.008G016000 Gossypium raimondii HOM05D004164 ORTHO05D004891 7.1e-49 198.0 195 52.8
Gohir.D12G015900 Gossypium hirsutum HOM05D004164 ORTHO05D004891 9.3e-49 197.6 194 53.1
Sp2g27310 Schrenkiella parvula HOM05D004164 ORTHO05D004891 9.3e-49 197.6 194 51.5
Zm00001eb033580 Zea mays HOM05D004164 ORTHO05D004891 9.3e-49 197.6 195 50.3
CSS0040430 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 1.2e-48 197.2 194 52.1
Lsat_1_v5_gn_5_108141 Lactuca sativa HOM05D004164 ORTHO05D004891 1.6e-48 196.8 195 49.7
Thecc.02G135100 Theobroma cacao HOM05D004164 ORTHO05D004891 1.6e-48 196.8 204 51.0
Actinidia24002 Actinidia chinensis HOM05D004164 ORTHO05D004891 2.1e-48 196.4 194 50.0
Gohir.A12G015600 Gossypium hirsutum HOM05D004164 ORTHO05D004891 2.1e-48 196.4 194 53.1
PGR042G3604 Punica granatum HOM05D004164 ORTHO05D004891 2.1e-48 196.4 195 53.3
QL11p022503 Quercus lobata HOM05D004164 ORTHO05D004891 2.7e-48 196.1 201 48.8
CSS0002795 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 3.5e-48 195.7 194 51.5
Lalb_Chr20g0122971 Lupinus albus HOM05D004164 ORTHO05D004891 3.5e-48 195.7 195 51.3
A06p30940 Brassica napus HOM05D004164 ORTHO05D004891 4.6e-48 195.3 194 50.5
BraA06t26033Z Brassica rapa HOM05D004164 ORTHO05D004891 4.6e-48 195.3 194 50.5
Cfa005671 Carpinus fangiana HOM05D004164 ORTHO05D004891 4.6e-48 195.3 201 49.3
CAN.G523.53 Capsicum annuum HOM05D004164 ORTHO05D004891 6.0e-48 194.9 194 49.5
Phvul.006G205400 Phaseolus vulgaris HOM05D004164 ORTHO05D004891 6.0e-48 194.9 195 50.8
TWI14G1169 Tripterygium wilfordii HOM05D004164 ORTHO05D004891 6.0e-48 194.9 195 49.2
CARHR278160 Cardamine hirsuta HOM05D004164 ORTHO05D004891 1.0e-47 194.1 194 50.5
MD05G1043200 Malus domestica HOM05D004164 ORTHO05D004891 1.0e-47 194.1 195 50.3
Medtr3g069190 Medicago truncatula HOM05D004164 ORTHO05D004891 1.0e-47 194.1 195 52.3
RcHm_v2.0_Chr6g0271551 Rosa chinensis HOM05D004164 ORTHO05D004891 1.0e-47 194.1 197 50.3
PGSC0003DMG400012550 Solanum tuberosum HOM05D004164 ORTHO05D004891 1.0e-47 194.1 194 49.5
GSVIVG01015759001 Vitis vinifera HOM05D004164 ORTHO05D004891 1.0e-47 194.1 194 51.0
Nitab4.5_0000863g0200 Nicotiana tabacum HOM05D004164 ORTHO05D004891 1.3e-47 193.7 194 49.5
Cc02_g21290 Coffea canephora HOM05D004164 ORTHO05D004891 1.7e-47 193.4 194 49.5
AUR62013150 Chenopodium quinoa HOM05D004164 ORTHO05D004891 2.3e-47 193.0 195 50.3
THA.LOC104799917 Tarenaya hassleriana HOM05D004164 ORTHO05D004891 2.3e-47 193.0 195 49.7
AL8G41570 Arabidopsis lyrata HOM05D004164 ORTHO05D004891 3.0e-47 192.6 194 49.5
AL8G41600 Arabidopsis lyrata HOM05D004164 ORTHO05D004891 3.0e-47 192.6 194 49.5
CiPaw.05G034200 Carya illinoinensis HOM05D004164 ORTHO05D004891 3.0e-47 192.6 195 51.3
Ciclev10028812m.g Citrus clementina HOM05D004164 ORTHO05D004891 3.9e-47 192.2 201 49.3
Hma1.2p1_0784F.1_g217100 Hydrangea macrophylla HOM05D004164 ORTHO05D004891 3.9e-47 192.2 195 50.3
PSO173G0166 Papaver somniferum HOM05D004164 ORTHO05D004891 3.9e-47 192.2 129 73.6
vmacro01837 Vaccinium macrocarpon HOM05D004164 ORTHO05D004891 3.9e-47 192.2 195 50.8
RcHm_v2.0_Chr6g0271711 Rosa chinensis HOM05D004164 ORTHO05D004891 5.1e-47 191.8 195 49.2
Peaxi162Scf01060g00013 Petunia axillaris HOM05D004164 ORTHO05D004891 6.6e-47 191.4 194 48.5
AT5G64250 Arabidopsis thaliana HOM05D004164 ORTHO05D004891 8.7e-47 191.0 194 49.5
Solyc01g105370.4 Solanum lycopersicum HOM05D004164 ORTHO05D004891 8.7e-47 191.0 194 48.5
Sopen01g047880 Solanum pennellii HOM05D004164 ORTHO05D004891 8.7e-47 191.0 194 48.5
ECA234G4615 Erigeron canadensis HOM05D004164 ORTHO05D004891 1.1e-46 190.7 195 49.7
Gohir.A04G114200 Gossypium hirsutum HOM05D004164 ORTHO05D004891 1.1e-46 190.7 195 49.7
Prupe.8G063800 Prunus persica HOM05D004164 ORTHO05D004891 1.1e-46 190.7 195 49.2
Prupe.8G064000 Prunus persica HOM05D004164 ORTHO05D004891 1.1e-46 190.7 195 49.2
Potri.017G051800 Populus trichocarpa HOM05D004164 ORTHO05D004891 1.9e-46 189.9 201 48.3
Ah.01g022180 Amaranthus hybridus HOM05D004164 ORTHO05D004891 2.5e-46 189.5 197 48.7
Carub.0008s2504 Capsella rubella HOM05D004164 ORTHO05D004891 2.5e-46 189.5 194 50.5
Aa31LG1G17650 Aethionema arabicum HOM05D004164 ORTHO05D004891 3.3e-46 189.1 194 49.0
MELO3C018623.2 Cucumis melo HOM05D004164 ORTHO05D004891 3.3e-46 189.1 195 48.2
TWI59G0238 Tripterygium wilfordii HOM05D004164 ORTHO05D004891 3.3e-46 189.1 195 47.7
Atru.chr6.1169 Acer truncatum HOM05D004164 ORTHO05D004891 7.3e-46 188.0 201 47.8
Psat5g128640 Pisum sativum HOM05D004164 ORTHO05D004891 7.3e-46 188.0 197 50.3
MSTRG.20292 Avicennia marina HOM05D004164 ORTHO05D004891 1.3e-45 187.2 195 47.7
Sed0011830 Sechium edule HOM05D004164 ORTHO05D004891 1.3e-45 187.2 196 48.5
CANSAT11G1236 Cannabis sativa HOM05D004164 ORTHO05D004891 1.6e-45 186.8 195 47.7
PSO210G2683 Papaver somniferum HOM05D004164 ORTHO05D004891 2.8e-45 186.0 195 49.2
Hund00072 Selenicereus undatus HOM05D004164 ORTHO05D004891 2.8e-45 186.0 195 48.2
Sc08g0003530 Simmondsia chinensis HOM05D004164 ORTHO05D004891 3.6e-45 185.7 194 50.0
Cpa.g.sc42.29 Carica papaya HOM05D004164 ORTHO05D004891 6.2e-45 184.9 229 45.0
Sabra17G0043400 Salix brachista HOM05D004164 ORTHO05D004891 8.1e-45 184.5 195 47.2
SabraUnG0002700 Salix brachista HOM05D004164 ORTHO05D004891 8.1e-45 184.5 195 47.2
Lj5A235T51 Lonicera japonica HOM05D004164 ORTHO05D004891 1.1e-44 184.1 194 47.4
ClCG09G015620 Citrullus lanatus HOM05D004164 ORTHO05D004891 1.4e-44 183.7 195 48.7
Mapoly0043s0005 Marchantia polymorpha HOM05D004164 ORTHO05D004891 2.4e-44 183.0 197 47.2
Aqoxy6G02071 Aquilegia oxysepala HOM05D004164 ORTHO05D004891 5.3e-44 181.8 195 48.2
Manes.07G033800 Manihot esculenta HOM05D004164 ORTHO05D004891 1.2e-43 180.6 194 46.9
SMO143G0159 Selaginella moellendorffii HOM05D004164 ORTHO05D004891 2.0e-43 179.9 195 45.1
SalBow5G4318 Salvia bowleyana HOM05D004164 ORTHO05D004891 2.6e-43 179.5 206 47.1
SalBow5G1609 Salvia bowleyana HOM05D004164 ORTHO05D004891 3.4e-43 179.1 206 47.1
CsaV3_7G006720 Cucumis sativus L. HOM05D004164 ORTHO05D004891 5.8e-43 178.3 182 50.5
EL10Ac9g21504 Beta vulgaris HOM05D004164 ORTHO05D004891 9.9e-43 177.6 190 46.8
Migut.B00589 Erythranthe guttata HOM05D004164 ORTHO05D004891 1.3e-42 177.2 194 46.4
Pp3c2_200 Physcomitrium patens HOM05D004164 ORTHO05D004891 3.8e-42 175.6 195 45.6
Rhsim11G0139400 Rhododendron simsii HOM05D004164 ORTHO05D004891 6.4e-42 174.9 194 47.9
DCAR_001777 Daucus carota HOM05D004164 ORTHO05D004891 8.4e-42 174.5 195 49.2
ATR0782G002 Amborella trichopoda HOM05D004164 ORTHO05D004891 1.1e-41 174.1 187 47.6
Gorai.012G142600 Gossypium raimondii HOM05D004164 ORTHO05D004891 1.1e-41 174.1 179 49.7
arahy.Tifrunner.gnm1.ann1.IF3X13 Arachis hypogaea HOM05D004164 ORTHO05D004891 1.9e-41 173.3 195 45.6
Oeu007975.1 Olea europaea HOM05D004164 ORTHO05D004891 3.2e-41 172.6 179 49.2
MBI02_g02171_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 7.9e-40 167.9 195 47.2
Gohir.D04G155600 Gossypium hirsutum HOM05D004164 ORTHO05D004891 1.9e-38 163.3 168 50.0
AagrBONN_evm.TU.Sc2ySwM_228.2787 Anthoceros agrestis HOM05D004164 ORTHO05D004891 2.5e-38 162.9 195 41.0
HPP92_004281 Vanilla planifolia HOM05D004164 ORTHO05D004891 4.8e-37 158.7 194 43.3
SGA_v2.0_scaffold83G26314 Striga asiatica HOM05D004164 ORTHO05D004891 2.0e-35 153.3 192 43.2
FAN24G1884 Fragaria x ananassa HOM05D004164 ORTHO05D004891 3.2e-33 146.0 179 44.7
Actinidia26597 Actinidia chinensis HOM05D004164 ORTHO05D004891 1.0e-31 141.0 145 48.3
AUR62010154 Chenopodium quinoa HOM05D004164 ORTHO05D004891 1.3e-31 140.6 194 40.2
FvH4_2g11900 Fragaria vesca HOM05D004164 ORTHO05D004891 1.9e-30 136.7 142 50.0
Os08g0485400 Oryza sativa ssp. japonica HOM05D004164 ORTHO05D004891 2.6e-27 126.3 137 47.4
TPR.G9891 Trifolium pratense HOM05D004164 ORTHO05D004891 7.2e-25 118.2 174 43.1
PSO507G0015 Papaver somniferum HOM05D004164 ORTHO05D004891 3.0e-23 112.8 83 67.5
MD05G1043700 Malus domestica HOM05D004164 ORTHO05D004891 1.3e-21 107.5 133 41.4
MBI18_g38521_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 3.7e-21 105.9 128 46.9
Lj6g0021052 Lotus japonicus HOM05D004164 ORTHO05D004891 1.8e-20 103.6 93 54.8
TPR.G11284 Trifolium pratense HOM05D004164 ORTHO05D004891 1.2e-19 100.9 124 46.8
Nn2g14913 Nelumbo nucifera HOM05D004164 ORTHO05D004891 2.0e-19 100.1 197 36.0
FAN15G1714 Fragaria x ananassa HOM05D004164 ORTHO05D004891 3.8e-18 95.9 93 51.6
Haze_10597 Corylus avellana HOM05D004164 ORTHO05D004891 3.2e-17 92.8 84 57.1
Pp3s30_626 Physcomitrium patens HOM05D004164 ORTHO05D004891 2.0e-14 83.6 203 35.5
TPR.G19821 Trifolium pratense HOM05D004164 ORTHO05D004891 4.8e-13 79.0 167 34.1
PSO400G0001 Papaver somniferum HOM05D004164 ORTHO05D004891 4.1e-12 75.9 54 72.2
CSS0002492 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 2.2e-10 70.1 55 54.5
Hma1.2p1_0784F.1_g217070 Hydrangea macrophylla HOM05D004164 ORTHO05D004891 2.2e-10 70.1 66 43.9
Cfa026889 Carpinus fangiana HOM05D004164 ORTHO05D004891 2.9e-10 69.7 214 27.6
Cfa023826 Carpinus fangiana HOM05D004164 ORTHO05D004891 5.0e-10 68.9 193 30.1
COL.COLO4_01173 Corchorus olitorius HOM05D004164 ORTHO05D004891 8.5e-10 68.2 103 40.8
Cfa026765 Carpinus fangiana HOM05D004164 ORTHO05D004891 3.2e-09 66.2 209 27.3
PRCOL_00000119 Prasinoderma coloniale HOM05D004164 ORTHO05D004891 5.5e-09 65.5 199 26.1
Nn5g30063 Nelumbo nucifera HOM05D004164 ORTHO05D004891 4.7e-08 62.4 52 51.9
TAR019G0004 Trochodendron aralioides HOM05D004164 ORTHO05D004891 1.8e-07 60.5 48 50.0
MD10G1050600 Malus domestica HOM05D004164 ORTHO05D004891 3.3e-06 56.2 56 44.6
TAR622G0536 Trochodendron aralioides HOM05D004164 ORTHO05D000005 4.4e-06 55.8 46 47.8


User provided reference genes

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