Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G2188 Papaver somniferum HOM05D006006 ORTHO05D007566 1.0e-201 706.4 346 100.0
PSO675G8728 Papaver somniferum HOM05D006006 ORTHO05D007566 2.2e-199 698.7 346 98.3
TAR381G0495 Trochodendron aralioides HOM05D006006 ORTHO05D007566 1.2e-157 560.1 340 79.1
GSVIVG01010048001 Vitis vinifera HOM05D006006 ORTHO05D007566 4.0e-153 545.0 345 76.5
Nn1g06190 Nelumbo nucifera HOM05D006006 ORTHO05D007566 1.6e-149 533.1 340 76.5
Thecc.08G145800 Theobroma cacao HOM05D006006 ORTHO05D007566 1.8e-148 529.6 340 73.5
Aqoxy6G00385 Aquilegia oxysepala HOM05D006006 ORTHO05D007566 5.1e-148 528.1 337 74.8
Duzib093G0547 Durio zibethinus HOM05D006006 ORTHO05D007566 6.7e-148 527.7 340 72.9
Nn5g28652 Nelumbo nucifera HOM05D006006 ORTHO05D007566 4.3e-147 525.0 340 75.3
CSS0049727 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 9.6e-147 523.9 340 74.1
CSS0044653 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 4.8e-146 521.5 340 73.8
COL.COLO4_04848 Corchorus olitorius HOM05D006006 ORTHO05D007566 2.4e-145 519.2 340 72.9
MBI03_g11319_MAGBIO Magnolia biondii HOM05D006006 ORTHO05D007566 3.1e-145 518.8 344 72.7
Atru.chr13.1712 Acer truncatum HOM05D006006 ORTHO05D007566 9.0e-145 517.3 349 72.2
QL02p024995 Quercus lobata HOM05D006006 ORTHO05D007566 2.2e-143 512.7 342 72.5
Cpa.g.sc49.54 Carica papaya HOM05D006006 ORTHO05D007566 3.8e-143 511.9 336 73.8
PGR042G3502 Punica granatum HOM05D006006 ORTHO05D007566 3.8e-143 511.9 349 73.4
THA.LOC104813696 Tarenaya hassleriana HOM05D006006 ORTHO05D007566 8.4e-143 510.8 340 72.9
Gorai.005G081300 Gossypium raimondii HOM05D006006 ORTHO05D007566 1.4e-142 510.0 340 70.9
Nitab4.5_0000633g0110 Nicotiana tabacum HOM05D006006 ORTHO05D007566 4.2e-142 508.4 340 71.8
Cfa018352 Carpinus fangiana HOM05D006006 ORTHO05D007566 7.1e-142 507.7 341 73.0
Lj7A365T41 Lonicera japonica HOM05D006006 ORTHO05D007566 7.1e-142 507.7 340 70.6
Prupe.8G021400 Prunus persica HOM05D006006 ORTHO05D007566 9.3e-142 507.3 341 71.8
Gohir.D02G072100 Gossypium hirsutum HOM05D006006 ORTHO05D007566 1.2e-141 506.9 340 70.3
CAN.G62.45 Capsicum annuum HOM05D006006 ORTHO05D007566 7.9e-141 504.2 343 71.1
Ciclev10001700m.g Citrus clementina HOM05D006006 ORTHO05D007566 1.3e-140 503.4 347 70.3
Manes.02G175900 Manihot esculenta HOM05D006006 ORTHO05D007566 1.3e-140 503.4 343 70.3
MD10G1017500 Malus domestica HOM05D006006 ORTHO05D007566 2.3e-140 502.7 343 70.6
Eucgr.F04261 Eucalyptus grandis HOM05D006006 ORTHO05D007566 3.9e-140 501.9 340 70.6
Gohir.A02G066200 Gossypium hirsutum HOM05D006006 ORTHO05D007566 3.9e-140 501.9 340 69.7
CiPaw.15G020800 Carya illinoinensis HOM05D006006 ORTHO05D007566 1.5e-139 500.0 340 72.6
Sopen06g020580 Solanum pennellii HOM05D006006 ORTHO05D007566 4.3e-139 498.4 337 71.2
Gorai.013G105300 Gossypium raimondii HOM05D006006 ORTHO05D007566 5.7e-139 498.0 340 69.7
Solyc06g060460.3 Solanum lycopersicum HOM05D006006 ORTHO05D007566 5.7e-139 498.0 337 71.5
Gohir.D03G061500 Gossypium hirsutum HOM05D006006 ORTHO05D007566 9.7e-139 497.3 340 70.0
PGSC0003DMG400017575 Solanum tuberosum HOM05D006006 ORTHO05D007566 9.7e-139 497.3 340 70.6
Potri.002G071300 Populus trichocarpa HOM05D006006 ORTHO05D007566 1.3e-138 496.9 343 70.8
ClCG09G009860 Citrullus lanatus HOM05D006006 ORTHO05D007566 1.6e-138 496.5 347 71.2
Oeu051259.1 Olea europaea HOM05D006006 ORTHO05D007566 2.8e-138 495.7 339 71.4
FvH4_2g14460 Fragaria vesca HOM05D006006 ORTHO05D007566 3.7e-138 495.4 342 69.6
HanXRQChr04g0109001 Helianthus annuus HOM05D006006 ORTHO05D007566 4.8e-138 495.0 347 70.0
CiPaw.16G016900 Carya illinoinensis HOM05D006006 ORTHO05D007566 8.2e-138 494.2 340 71.8
CsaV3_7G024870 Cucumis sativus L. HOM05D006006 ORTHO05D007566 8.2e-138 494.2 347 70.9
MD05G1017500 Malus domestica HOM05D006006 ORTHO05D007566 1.1e-137 493.8 341 69.5
BcaB07g32125 Brassica carinata HOM05D006006 ORTHO05D007566 1.8e-137 493.0 335 72.8
Carub.0001s2078 Capsella rubella HOM05D006006 ORTHO05D007566 1.8e-137 493.0 346 70.8
TWI34G1885 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 3.1e-137 492.3 343 69.1
FAN24G1565 Fragaria x ananassa HOM05D006006 ORTHO05D007566 4.1e-137 491.9 342 69.0
CARHR021760 Cardamine hirsuta HOM05D006006 ORTHO05D007566 6.9e-137 491.1 341 71.3
Thhalv10008107m.g Eutrema salsugineum HOM05D006006 ORTHO05D007566 6.9e-137 491.1 348 71.3
RcHm_v2.0_Chr6g0276791 Rosa chinensis HOM05D006006 ORTHO05D007566 6.9e-137 491.1 336 69.9
Sabra02G0056100 Salix brachista HOM05D006006 ORTHO05D007566 6.9e-137 491.1 343 70.0
FAN15G3392 Fragaria x ananassa HOM05D006006 ORTHO05D007566 9.0e-137 490.7 342 68.7
Haze_17707 Corylus avellana HOM05D006006 ORTHO05D007566 1.5e-136 490.0 371 67.1
Lalb_Chr04g0263651 Lupinus albus HOM05D006006 ORTHO05D007566 2.6e-136 489.2 344 69.8
TWI60G1394 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 3.4e-136 488.8 342 68.7
AT1G21370 Arabidopsis thaliana HOM05D006006 ORTHO05D007566 2.9e-135 485.7 346 70.8
FAN27G0920 Fragaria x ananassa HOM05D006006 ORTHO05D007566 3.8e-135 485.3 342 67.8
Sp1g18920 Schrenkiella parvula HOM05D006006 ORTHO05D007566 5.0e-135 485.0 341 71.0
BraA06t24839Z Brassica rapa HOM05D006006 ORTHO05D007566 1.1e-134 483.8 351 69.8
Oeu014478.2 Olea europaea HOM05D006006 ORTHO05D007566 1.1e-134 483.8 358 67.0
CANSAT25G3881 Cannabis sativa HOM05D006006 ORTHO05D007566 1.4e-134 483.4 339 67.6
A06p17420 Brassica napus HOM05D006006 ORTHO05D007566 2.5e-134 482.6 347 70.0
FAN20G0686 Fragaria x ananassa HOM05D006006 ORTHO05D007566 2.5e-134 482.6 373 63.5
DCAR_008158 Daucus carota HOM05D006006 ORTHO05D007566 5.5e-134 481.5 344 67.2
Sed0017044 Sechium edule HOM05D006006 ORTHO05D007566 9.3e-134 480.7 348 67.8
Glyma.13G039000 Glycine max HOM05D006006 ORTHO05D007566 1.6e-133 479.9 346 66.5
Cc10_g14250 Coffea canephora HOM05D006006 ORTHO05D007566 2.7e-133 479.2 326 69.6
C05p20260 Brassica napus HOM05D006006 ORTHO05D007566 1.4e-132 476.9 352 68.2
BolC5t30719H Brassica oleracea HOM05D006006 ORTHO05D007566 1.4e-132 476.9 352 68.2
Glyma.14G123000 Glycine max HOM05D006006 ORTHO05D007566 1.8e-132 476.5 346 65.9
BcaC05g26044 Brassica carinata HOM05D006006 ORTHO05D007566 3.0e-132 475.7 352 68.2
Aa31LG7G5530 Aethionema arabicum HOM05D006006 ORTHO05D007566 3.9e-132 475.3 344 69.5
MSTRG.24200 Avicennia marina HOM05D006006 ORTHO05D007566 5.1e-132 474.9 336 68.2
Ah.01g005030 Amaranthus hybridus HOM05D006006 ORTHO05D007566 3.3e-131 472.2 340 67.6
EL10Ac9g20647 Beta vulgaris HOM05D006006 ORTHO05D007566 7.4e-131 471.1 340 66.8
Phvul.001G072900 Phaseolus vulgaris HOM05D006006 ORTHO05D007566 2.8e-130 469.2 341 66.9
MELO3C023695.2 Cucumis melo HOM05D006006 ORTHO05D007566 6.3e-130 468.0 406 60.6
HanXRQChr08g0217661 Helianthus annuus HOM05D006006 ORTHO05D007566 6.3e-130 468.0 345 66.7
arahy.Tifrunner.gnm1.ann1.T5RWDG Arachis hypogaea HOM05D006006 ORTHO05D007566 4.1e-129 465.3 350 64.6
Lj4A692T31 Lonicera japonica HOM05D006006 ORTHO05D007566 4.1e-129 465.3 340 65.3
Lj1g0023019 Lotus japonicus HOM05D006006 ORTHO05D007566 5.3e-129 464.9 343 66.2
Os04g0438500 Oryza sativa ssp. japonica HOM05D006006 ORTHO05D007566 9.1e-129 464.2 338 68.0
arahy.Tifrunner.gnm1.ann1.D9Y8GI Arachis hypogaea HOM05D006006 ORTHO05D007566 1.2e-128 463.8 350 64.3
ATR1136G139 Amborella trichopoda HOM05D006006 ORTHO05D007566 2.6e-128 462.6 344 65.1
BcaB03g12819 Brassica carinata HOM05D006006 ORTHO05D007566 2.6e-128 462.6 341 67.4
HPP92_004629 Vanilla planifolia HOM05D006006 ORTHO05D007566 2.6e-128 462.6 341 64.2
AL1G34470 Arabidopsis lyrata HOM05D006006 ORTHO05D007566 4.5e-128 461.8 302 73.8
Lsat_1_v5_gn_1_8980 Lactuca sativa HOM05D006006 ORTHO05D007566 5.9e-128 461.5 291 73.2
C08p20770 Brassica napus HOM05D006006 ORTHO05D007566 1.4e-126 456.8 325 69.5
unitig_21.g20180 Utricularia gibba HOM05D006006 ORTHO05D007566 4.7e-125 451.8 339 65.5
Migut.N03230 Erythranthe guttata HOM05D006006 ORTHO05D007566 2.3e-124 449.5 342 64.3
Zm00001eb422860 Zea mays HOM05D006006 ORTHO05D007566 3.9e-124 448.7 342 65.5
TPR.G33300 Trifolium pratense HOM05D006006 ORTHO05D007566 6.7e-124 448.0 348 64.1
unitig_744.g24565 Utricularia gibba HOM05D006006 ORTHO05D007566 1.5e-123 446.8 348 63.2
Medtr1g029000 Medicago truncatula HOM05D006006 ORTHO05D007566 5.7e-123 444.9 346 65.3
VMungo0647G2124 Vigna mungo HOM05D006006 ORTHO05D007566 5.7e-123 444.9 330 66.7
Actinidia15154 Actinidia chinensis HOM05D006006 ORTHO05D007566 7.4e-123 444.5 284 76.4
Ca_12665_v3 Cicer arietinum L. HOM05D006006 ORTHO05D007566 2.0e-120 436.4 346 64.2
BolC8t49716H Brassica oleracea HOM05D006006 ORTHO05D007566 3.8e-119 432.2 332 65.4
Psat0s5561g0040 Pisum sativum HOM05D006006 ORTHO05D007566 1.1e-118 430.6 350 61.4
SHI09110 Sapria himalayana HOM05D006006 ORTHO05D007566 5.3e-113 411.8 346 60.7
Peaxi162Scf00051g00516 Petunia axillaris HOM05D006006 ORTHO05D007566 7.7e-112 407.9 232 79.7
ECA247G2705 Erigeron canadensis HOM05D006006 ORTHO05D007566 6.5e-111 404.8 245 75.5
CDE06G2625 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 3.3e-107 392.5 246 72.0
CDE08G1689 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 1.2e-104 384.0 246 71.1
SEGI_37970 Sequoiadendron giganteum HOM05D006006 ORTHO05D007566 6.5e-103 378.3 332 59.0
BcaC07g39093 Brassica carinata HOM05D006006 ORTHO05D007566 1.1e-102 377.5 332 59.9
Mapoly0050s0105 Marchantia polymorpha HOM05D006006 ORTHO05D007566 1.6e-101 373.6 304 59.2
Dinv25817 Davidia involucrata HOM05D006006 ORTHO05D007566 6.8e-100 368.2 303 62.0
Pp3c25_12020 Physcomitrium patens HOM05D006006 ORTHO05D007566 4.2e-94 349.0 330 54.5
C06p40100 Brassica napus HOM05D006006 ORTHO05D007566 3.0e-92 342.8 232 70.3
Sc02g0004370 Simmondsia chinensis HOM05D006006 ORTHO05D007566 1.2e-88 330.9 237 69.2
Nitab4.5_0008475g0010 Nicotiana tabacum HOM05D006006 ORTHO05D007566 9.5e-86 321.2 237 67.9
Pp3c6_4630 Physcomitrium patens HOM05D006006 ORTHO05D007566 1.4e-84 317.4 325 51.7
Gohir.A02G108509 Gossypium hirsutum HOM05D006006 ORTHO05D007566 1.2e-83 314.3 237 66.2
Gohir.A02G108508 Gossypium hirsutum HOM05D006006 ORTHO05D007566 1.5e-83 313.9 237 66.2
SMO228G0011 Selaginella moellendorffii HOM05D006006 ORTHO05D007566 7.0e-81 305.1 241 60.2
SGA_v2.0_scaffold25G11170 Striga asiatica HOM05D006006 ORTHO05D007566 4.6e-80 302.4 235 66.0
AagrBONN_evm.TU.Sc2ySwM_344.2333 Anthoceros agrestis HOM05D006006 ORTHO05D007566 4.1e-65 252.7 173 68.2
TAR625G0955 Trochodendron aralioides HOM05D006006 ORTHO05D007566 4.3e-62 242.7 162 72.2
MCO04G174 Micromonas commoda HOM05D006006 ORTHO05D007566 1.8e-60 237.3 244 48.4
AUR62025132 Chenopodium quinoa HOM05D006006 ORTHO05D007566 1.1e-57 228.0 191 59.2
AUR62037127 Chenopodium quinoa HOM05D006006 ORTHO05D007566 7.8e-56 221.9 191 59.2
PRCOL_00006391 Prasinoderma coloniale HOM05D006006 ORTHO05D007566 3.1e-52 209.9 196 51.5
Cre02.g116000 Chlamydomonas reinhardtii HOM05D006006 ORTHO05D007566 3.5e-48 196.4 196 51.0
Pp3c5_24650 Physcomitrium patens HOM05D006006 ORTHO05D007566 4.0e-44 183.0 185 54.1
Ah.02g110550 Amaranthus hybridus HOM05D006006 ORTHO05D007566 7.6e-27 125.6 73 79.5
SGA_v2.0_scaffold35G14089 Striga asiatica HOM05D006006 ORTHO05D007566 1.3e-23 114.8 79 67.1
CDE04G1521 Ceratophyllum demersum HOM05D000566 ORTHO05D000686 4.6e-16 89.7 57 66.7
Pp3c16_22840 Physcomitrium patens HOM05D006006 ORTHO05D318415 6.5e-10 69.3 53 62.3


User provided reference genes

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